BAC Information

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BAC

Clone NameMSMg01-540E14
Chromosome6 (Build37)
Map Location 11,427,480 - 11,427,975
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540E14.T7 (MSMg01no540_e14.b1)MSMg01-540E14.TJ (MSMg01no540_e14.g1)
ACCAG606574AG606575
length757750
length of high quality
(start - end)		500 (46 - 545)642 (74 - 715)
definitionCHROMAT_FILE: MSMg01no540_e14.b1 PHD_FILE: MSMg01no540_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:31 2005CHROMAT_FILE: MSMg01no540_e14.g1 PHD_FILE: MSMg01no540_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTTTTGTACATGCATCTGAAAGCAAATTGCAGATTCTAACTTT
AGCTGTAATCAAATGATGCCAATATAATCTCAATATCTTTAGATCCTCAC
AAAGTCAACTCCAGTGGAGATCTTTCTTTCCTTATTCTACTCCTGAAAGC
AACATATTTTGGAAATTCAGTTAAATGTTAAAACATCCCTGCCATGAGCT
GCAGTGTTAAACAAGACCATAGTCAATATCTGCTTAGGAAACATGATCTC
TAACACAAGGGCTTGCCACTCCCTTATTAAGTTTATTGATGAATTGTAAT
TCTATGTTTTTATTTGTTCCCTAGGAGATAACCAGAATTAGTATAGTTTA
ATATATTAATTTGTCACATCAAATAAGAGGTTCCTTTTATATGAACAAAA
TCAATATATCCATAGATATATTAAGATCTTGGGTTTTCTGAATTCCAAAA
CATTCCAATAATGCAATAGGAGAGTAATGAAATGAATTTCTTTAAAAAAA
AAAACAAAACAAATGCTATATATCCTTATTATCCTGCTTGGGGAATTTTT
TGTGGATTTCAAAATTCCGAGTCTAAACATGACACAAATATTTAATACAG
ATGCTGTGATGGTTGATCTTACATGTGGACCTGGTTTAATTAAAAAAAGT
CTAGGAGGTTCTTGCAGACACACATCTTCTAAAGTGGTCCGGGGGAAAAA
AAAACTA

NCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCACTAAACCCATTTGGTCCTGGGCT
TTTTTTGGTTGGGAGACCATTAAATAGATTGTTTCTATTTCTTTAGGGCA
TATGGGACTGTTTAGATCATTAACTTGATCCTGGTTTAACTTTGATACCT
TGTATCTGTCTTGAAATTTGTCCATTTCGTCCAGGTTTTCTAGTTTTGTT
TAGTATAGCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAGGT
TTTGTTGTTATATCTCACTTTTCATTTCTGATTTTGTTAATTAGGATGCT
GTCCCTCTGCCCTCTAGTGAGAATGGCTAAGGGTTTATCTATCTTGTTGA
TTTTCTCAAAGAATGAGCTCCTCATTTGGTTGATTCTTTGAATAGTTCTT
CCTGTTTCCACTTGGTTGATTTCACCCCTGAGTTTGATTATTTCCTGCCG
TCTACTCCTCTTGGGTGAATTTGCTTCCTTTTTTTCTAAAGCTTTTAGGT
ATGTTGTCAAGCTGCTAGTGTGTGCTCTCTCTAGTTTCTTTTTGGAGGCA
CTCAGAGCTATGAGTTTCCCTCTTAGAAATTCTTTCATAGTGTCCTATAG
GTTTGGGTATGTTGTGGCTTCATTTTCATTAAACTCTAAAAAGNCTTTAA
TTTCTTTCTTTATTCCTTCCTTGACCAAGGTATCATTAAGAAGATTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_e14.b1 MSMg01no540_e14.b1 CHROMAT_FILE:
MSMg01no540_e14.b1 PHD_FILE: MSMg01no540_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:31 2005
         (500 letters)



>mm_chr6_11427276_11428175
          Length = 900

 Score =  944 bits (488), Expect = 0.0
 Identities = 494/496 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcttttgtacatgcatctgaaagcaaattgcagattctaactttagctgtaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gaattcatcttttgtacatgcatctgaaagcaaattgcagattctaactttagctgtaat 641

                                                                       
Query: 65  caaatgatgccaatataatctcaatatctttagatcctcacaaagtcaactccagtggag 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 640 caaatgatgccaatataatctcaatatctttagatgctcacaaagtcaactccagtggag 581

                                                                       
Query: 125 atctttctttccttattctactcctgaaagcaacatattttggaaattcagttaaatgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atctttctttccttattctactcctgaaagcaacatattttggaaattcagttaaatgtt 521

                                                                       
Query: 185 aaaacatccctgccatgagctgcagtgttaaacaagaccatagtcaatatctgcttagga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 520 aaaacatccctgccatgagctgcagtgttaaacaagaccatagtcaatatctgcttaaga 461

                                                                       
Query: 245 aacatgatctctaacacaagggcttgccactcccttattaagtttattgatgaattgtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aacatgatctctaacacaagggcttgccactcccttattaagtttattgatgaattgtaa 401

                                                                       
Query: 305 ttctatgtttttatttgttccctaggagataaccagaattagtatagtttaatatattaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttctatgtttttatttgttccctaggagataaccagaattagtatagtttaatatattaa 341

                                                                       
Query: 365 tttgtcacatcaaataagaggttccttttatatgaacaaaatcaatatatccatagatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tttgtcacatcaaataagaggttccttttatatgaacaaaatcaatatatccatagatat 281

                                                                       
Query: 425 attaagatcttgggttttctgaattccaaaacattccaataatgcaataggagagtaatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attaagatcttgggttttctgaattccaaaacattccaataatgcaataggagagtaatg 221

                           
Query: 485 aaatgaatttctttaa 500
           ||||||||||||||||
Sbjct: 220 aaatgaatttctttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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