BAC Information

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BAC

Clone NameMSMg01-540E24
Chromosome6 (Build37)
Map Location 113,695,686 - 113,874,368
singlet/doubletdoublet
Overlap geneAtp2b2
Upstream geneSrgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540E24.T7 (MSMg01no540_e24.b1)MSMg01-540E24.TJ (MSMg01no540_e24.g1)
ACCAG606594AG606595
length752755
length of high quality
(start - end)
619 (48 - 666)514 (70 - 583)
definitionCHROMAT_FILE: MSMg01no540_e24.b1 PHD_FILE: MSMg01no540_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:32 2005CHROMAT_FILE: MSMg01no540_e24.g1 PHD_FILE: MSMg01no540_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,695,686 - 113,696,312)(113,873,872 - 113,874,368)
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGA
ATTCTTTATTTTTACTATTGTCTAGATAAAAAAATTCATAAAAACAGATG
AATGGTCATAAATTATTGACCCCCTAATGGGGTGAACTGCCAAACGTATC
CCATGCTGCTAGATATAGGACGCAGAAGTGCAAGCTTGTGTATTACAGTG
AGTTCTGACAAACCAACCATCTCCTGTGTAGGTGTGTGTGTATGGAAGAG
TGTGAGAGTGAGGGGCTGGGGCATAGGCTATCTCTCATTCCTGACACGGG
GAAGCCAGCACTAATGTCAGGCCTCCTTGCTAGTTTCCTCTGCTCCTGTC
TGAGAACCTGGCTCTGCTCAGAGAACCCCTTCCTCTTTGCCCTGGAGGCC
TGGTTCCAAAGCCTGAGGACCCCGGTTTGTTAAGCGCAAGAACCCTGGTG
GCATGGAATGAGGTCATAGATGCATGGTTGAATGAAGGAGGGCAGGATGA
AAAATGTGACAAAGGACTCCCCACCAAAAGTCCCGAACCAATCAAACAAC
AACAGCAGCAACAACAATAACAACAACAACAAAACCAAACCAAAAACCTA
TCCTGTTCCAAGGCAGCCCCGGGTTTCCTTCCCTCCCTTGGAGGGGTACT
ATGGACTGGCTCTGGTGGTGTCTGTACTGGAATCCAGTGAGTACATCTAG
GGCTGGTCCACCTGCTGGAGAAGTAGCTCTCTCTCTCTCCTGGAAACATC
AA
NACTATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAGAAAACTTTACGCAGAGGGAAACACACGT
TTAGTGGCTTCTACTTCTAGGTTGGAGTGGAGTCACTAGCCAGAATCTCC
TCTGTAAGGACAGCTGAAAGCCCCCGACACACTCAGAACAACTAGAAGAC
AGACACATGAAGGGGGAACACAGCTGGCCCGGGGTGGGAAGAGGCCCCAG
GATCCCACAGTGGAAACTCTGGGTCTTTCCATGACAAAATTTATCCCAGA
ATCAAACTGAAGAAACTAGGACTGAGGCCTTGACAATAGTCATACCCAGC
AGTCCCCACCCTAGAGCAGCCTTCTTCAATCTGTGGGCTGTGACCCTTTT
GGGAGTCAAATGACTTTCACAGGGGGTCACTTTAGACTATCGGAAAACAC
AGATTTCACATTATGATTCATAAGTGCAAAATTACAGTTATGAAATAGCA
ACAAAAAATCATTTTATGGTTGGGGGTCACCACAACATGAAGAACTGTTA
AAGGGTCACAGCGTTAGGAAGGTTGAGAGCCACTGCCGTGGAGAATGCAA
GGGTCAAACGCATACTCCAGATGCTGGCTACTGTCCCAGCCAGTCACCAA
GAAACATGGAATGCGAGATGGGACCTCCACCATCAGCAGGCTATAATGCG
GAAAGCCATGGGAAGTTGTAAGGACCCCCAACCCTCCCACTAGAGGGATT
CCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_e24.b1 MSMg01no540_e24.b1 CHROMAT_FILE:
MSMg01no540_e24.b1 PHD_FILE: MSMg01no540_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:32 2005
         (619 letters)



>mm_chr6_113695485_113696506
          Length = 1022

 Score = 1112 bits (575), Expect = 0.0
 Identities = 611/629 (97%), Gaps = 13/629 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattctttatttttac---tattgtctagataaaaaaattcataaaaacagatgaatgg 58
           |||||||||||||  ||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctttattt--acaattattgtctagataaaaaaattcataaaaacagatgaatgg 259

                                                                       
Query: 59  tcataaattattgaccccctaatggggtgaactgccaaacgtatcccatgctgctagata 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcataaattattgaccccctaatggggtgaactgccaaacgtatcccatgctgctagata 319

                                                                       
Query: 119 taggacgcagaagtgcaagcttgtgtattacagtgagttctgacaaaccaaccatctcct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taggacgcagaagtgcaagcttgtgtattacagtgagttctgacaaaccaaccatctcct 379

                                                                       
Query: 179 gtgtaggtgtgtgtgt--atggaagagtgtgagagtgaggggctggggcataggctatct 236
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgtaggtgtgtgtgtgtatggaagagtgtgagagtgaggggctggggcataggctatct 439

                                                                       
Query: 237 ctcattcctgacacggggaagccagcactaatgtcaggcctccttgctagtttcctctgc 296
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcattcctgacaccgggaagccagcactaatgtcaggcctccttgctagtttcctctgc 499

                                                                       
Query: 297 tcctgtctgagaacctggctctgctcagagaaccccttcctctttgccctggaggcctgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcctgtctgagaacctggctctgctcagagaaccccttcctctttgccctggaggcctgg 559

                                                                       
Query: 357 ttccaaagcctgaggaccccggtttgttaagcgcaagaaccctggtggcatggaatgagg 416
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 ttccaaagcccgaggaccccggtttgttaagagcaagaaccctggtggcatggaatgagg 619

                                                                       
Query: 417 tcatagatgcatggttgaatgaaggagggcaggatgaaaaatgtgacaaaggactcccca 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcatagatgcatggttgaatgaaggagggcaggatgaaaaatgtgacaaaggactcccca 679

                                                                       
Query: 477 ccaaaagtcccgaaccaatcaaacaacaacagcagca------acaacaataacaacaac 530
           ||||||||||| |||||||||||||||||||||||||      ||||||| |||||||||
Sbjct: 680 ccaaaagtcccaaaccaatcaaacaacaacagcagcagcagcaacaacaacaacaacaac 739

                                                                       
Query: 531 aacaaaaccaaaccaaaaacctatcctgttccaaggcagccccgggtttccttccctccc 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacaaaaccaaaccaaaaacctatcctgttccaaggcagccccgggtttccttccctccc 799

                                        
Query: 591 ttggaggggtactatggactggctctggt 619
           |||||||||||||||||||||||||||||
Sbjct: 800 ttggaggggtactatggactggctctggt 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1022
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1012
Effective search space:   616308
Effective search space used:   616308
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no540_e24.g1 MSMg01no540_e24.g1 CHROMAT_FILE:
MSMg01no540_e24.g1 PHD_FILE: MSMg01no540_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:33 2005
         (514 letters)



>mm_chr6_113873872_113874785
          Length = 914

 Score =  907 bits (469), Expect = 0.0
 Identities = 490/497 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaaaactttacgcagagggaaacacacgtttagtggcttctacttctaggttggagtg 60
           |||||||||||| |||||||||||||||| |||||||||||||| ||| ||| |||||||
Sbjct: 497 tagaaaactttaggcagagggaaacacacatttagtggcttctatttccaggctggagtg 438

                                                                       
Query: 61  gagtcactagccagaatctcctctgtaaggacagctgaaagcccccgacacactcagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagtcactagccagaatctcctctgtaaggacagctgaaagcccccgacacactcagaac 378

                                                                       
Query: 121 aactagaagacagacacatgaagggggaacacagctggcccggggtgggaagaggcccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aactagaagacagacacatgaagggggaacacagctggcccggggtgggaagaggcccca 318

                                                                       
Query: 181 ggatcccacagtggaaactctgggtctttccatgacaaaatttatcccagaatcaaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggatcccacagtggaaactctgggtctttccatgacaaaatttatcccagaatcaaactg 258

                                                                       
Query: 241 aagaaactaggactgaggccttgacaatagtcatacccagcagtccccaccctagagcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagaaactaggactgaggccttgacaatagtcatacccagcagtccccaccctagagcag 198

                                                                       
Query: 301 ccttcttcaatctgtgggctgtgacccttttgggagtcaaatgactttcacagggggtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ccttcttcaatctgtgggctgtgacccttttgggagtcaaatgactttcacagggggtca 138

                                                                       
Query: 361 ctttagactatcggaaaacacagatttcacattatgattcataagtgcaaaattacagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ctttagactatcggaaaacacagatttcacattatgattcataagtgcaaaattacagtt 78

                                                                       
Query: 421 atgaaatagcaacaaaaaatcattttatggttgggggtcaccacaacatgaagaactgtt 480
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 77  atgaaatagcaacaaaaaatcattttatggttgggggtcaccacattatgaagaactgtt 18

                            
Query: 481 aaagggtcacagcgtta 497
           |||||||||||||||||
Sbjct: 17  aaagggtcacagcgtta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)