Query= MSMg01no540_e24.b1 MSMg01no540_e24.b1 CHROMAT_FILE:
MSMg01no540_e24.b1 PHD_FILE: MSMg01no540_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:32 2005
(619 letters)
>mm_chr6_113695485_113696506
Length = 1022
Score = 1112 bits (575), Expect = 0.0
Identities = 611/629 (97%), Gaps = 13/629 (2%)
Strand = Plus / Plus
Query: 2 gaattctttatttttac---tattgtctagataaaaaaattcataaaaacagatgaatgg 58
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctttattt--acaattattgtctagataaaaaaattcataaaaacagatgaatgg 259
Query: 59 tcataaattattgaccccctaatggggtgaactgccaaacgtatcccatgctgctagata 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcataaattattgaccccctaatggggtgaactgccaaacgtatcccatgctgctagata 319
Query: 119 taggacgcagaagtgcaagcttgtgtattacagtgagttctgacaaaccaaccatctcct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taggacgcagaagtgcaagcttgtgtattacagtgagttctgacaaaccaaccatctcct 379
Query: 179 gtgtaggtgtgtgtgt--atggaagagtgtgagagtgaggggctggggcataggctatct 236
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgtaggtgtgtgtgtgtatggaagagtgtgagagtgaggggctggggcataggctatct 439
Query: 237 ctcattcctgacacggggaagccagcactaatgtcaggcctccttgctagtttcctctgc 296
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcattcctgacaccgggaagccagcactaatgtcaggcctccttgctagtttcctctgc 499
Query: 297 tcctgtctgagaacctggctctgctcagagaaccccttcctctttgccctggaggcctgg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcctgtctgagaacctggctctgctcagagaaccccttcctctttgccctggaggcctgg 559
Query: 357 ttccaaagcctgaggaccccggtttgttaagcgcaagaaccctggtggcatggaatgagg 416
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 ttccaaagcccgaggaccccggtttgttaagagcaagaaccctggtggcatggaatgagg 619
Query: 417 tcatagatgcatggttgaatgaaggagggcaggatgaaaaatgtgacaaaggactcccca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcatagatgcatggttgaatgaaggagggcaggatgaaaaatgtgacaaaggactcccca 679
Query: 477 ccaaaagtcccgaaccaatcaaacaacaacagcagca------acaacaataacaacaac 530
||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 680 ccaaaagtcccaaaccaatcaaacaacaacagcagcagcagcaacaacaacaacaacaac 739
Query: 531 aacaaaaccaaaccaaaaacctatcctgttccaaggcagccccgggtttccttccctccc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacaaaaccaaaccaaaaacctatcctgttccaaggcagccccgggtttccttccctccc 799
Query: 591 ttggaggggtactatggactggctctggt 619
|||||||||||||||||||||||||||||
Sbjct: 800 ttggaggggtactatggactggctctggt 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1022
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1012
Effective search space: 616308
Effective search space used: 616308
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_e24.g1 MSMg01no540_e24.g1 CHROMAT_FILE:
MSMg01no540_e24.g1 PHD_FILE: MSMg01no540_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:33 2005
(514 letters)
>mm_chr6_113873872_113874785
Length = 914
Score = 907 bits (469), Expect = 0.0
Identities = 490/497 (98%)
Strand = Plus / Minus
Query: 1 tagaaaactttacgcagagggaaacacacgtttagtggcttctacttctaggttggagtg 60
|||||||||||| |||||||||||||||| |||||||||||||| ||| ||| |||||||
Sbjct: 497 tagaaaactttaggcagagggaaacacacatttagtggcttctatttccaggctggagtg 438
Query: 61 gagtcactagccagaatctcctctgtaaggacagctgaaagcccccgacacactcagaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagtcactagccagaatctcctctgtaaggacagctgaaagcccccgacacactcagaac 378
Query: 121 aactagaagacagacacatgaagggggaacacagctggcccggggtgggaagaggcccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aactagaagacagacacatgaagggggaacacagctggcccggggtgggaagaggcccca 318
Query: 181 ggatcccacagtggaaactctgggtctttccatgacaaaatttatcccagaatcaaactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggatcccacagtggaaactctgggtctttccatgacaaaatttatcccagaatcaaactg 258
Query: 241 aagaaactaggactgaggccttgacaatagtcatacccagcagtccccaccctagagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagaaactaggactgaggccttgacaatagtcatacccagcagtccccaccctagagcag 198
Query: 301 ccttcttcaatctgtgggctgtgacccttttgggagtcaaatgactttcacagggggtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ccttcttcaatctgtgggctgtgacccttttgggagtcaaatgactttcacagggggtca 138
Query: 361 ctttagactatcggaaaacacagatttcacattatgattcataagtgcaaaattacagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ctttagactatcggaaaacacagatttcacattatgattcataagtgcaaaattacagtt 78
Query: 421 atgaaatagcaacaaaaaatcattttatggttgggggtcaccacaacatgaagaactgtt 480
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 77 atgaaatagcaacaaaaaatcattttatggttgggggtcaccacattatgaagaactgtt 18
Query: 481 aaagggtcacagcgtta 497
|||||||||||||||||
Sbjct: 17 aaagggtcacagcgtta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
