BAC Information

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BAC

Clone NameMSMg01-540F01
Chromosome6 (Build37)
Map Location 66,358,849 - 66,359,044
singlet/doubletsinglet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540F01.T7 (MSMg01no540_f01.b1)MSMg01-540F01.TJ (MSMg01no540_f01.g1)
ACCAG606596AG606597
length721669
length of high quality
(start - end)
642 (80 - 721)200 (76 - 275)
definitionCHROMAT_FILE: MSMg01no540_f01.b1 PHD_FILE: MSMg01no540_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:33 2005CHROMAT_FILE: MSMg01no540_f01.g1 PHD_FILE: MSMg01no540_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCATATTACACAGCTCACACATGGATTTAAGCCACTATAT
TGTGGCATTTGCCTGCCAGAGACTATACTTGGTGTTCAGGATCCCAGTGT
AACCCTAACCCTTTCTCACAGGGAGGTTAAAAAACAAAAAATGTCCTGGG
TTAATACCCTTCACTTAAGAAGAGCAGTTAGCCAGAAGCAGAATGAAAGA
AACCAAAGAGCAAGGTAAGTACAGTTAGAGACTTCCCATAACTGTGCACT
TTGATGGATTAGCCTTTGTCTTATTTTTGGCAGATGATGCTGTCTATGTG
CTGAGTTTCACAACCTGAATGACACTTTCTTCATGGAGTCAGGTGTGCTA
AGGTCTGAGACCTATTAAATCTGGGGCTCCACTTAGCCTTTACATATCTA
AAGCTTAAAAGTTAAAATCCATCTACATATGAAAGGAAATATAAAATGTT
TGTCATTTTGGACCTGAGTTATCTCACTCAGGATGATTGTTTCTAGAGCT
AATCATTTACCTGACATTTTCATAATTTCATTTTTTATTTACTGCTGGAT
AAGAGTTCATTGCATAAATACACCATATTTTCATTACACGTTCATCATTT
CACAGAAATCTAGGATGGTTTTGATTCATGGCTACTATGAATAGAGCATT
AATGAATATAGCATCTTATAG
AAAAAAGGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTTAATAATCGTAAGTACCTCCA
GGGGCTCTTGAGAGTATCAAGCAAGCTGTGTGCCAAATGCTGAGCAAGGA
ACCTGGACATGGAAAGTGTCATGGGCTCCTTATCACTGCTCAGTGCTTAT
GGGAGGCTCTCTCTTCCATTTTTCACACAGAGCCCTCCACCACATCTGGA
AATCAATAGTGGCCTATCCCCTGGGGCACTTTCTTGAAAAATAGGTTAAA
ATTGGAAAATCTTTTGAAAAAAACTGGGAAATTTTGGTTAAAAAAAAACC
CCCCCAAAAAAAACCTTTCCGGCAGGGGGGGTAAAAAAAAACCCCCCCCC
CTCTTTGTAAAAAAAAGGAGAAACCTTTTTTCTCTTTTTCCCTCTTGGGT
GTTTTTTTTTTTTAAAAAAAAAAACACCCCCCCTCTTTTTTTTTTTAGAA
AAAAAAGATTTTTTTGTTTTTTTTCTTTTAAAANAAAAAACCCCCCCGGG
AGAAAAATTTTTCTTCCTTTTTTTTTTTNNNTGGGGCCCCACTTTCCCCA
GGAGAAAAANNNNNNNCNNAANNCCCCCGCGGAGGAGAGAAGGGCCCGCG
TGCGCCGACCAGTATAGNA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_f01.g1 MSMg01no540_f01.g1 CHROMAT_FILE:
MSMg01no540_f01.g1 PHD_FILE: MSMg01no540_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:33 2005
         (200 letters)



>mm_chr6_66358649_66359244
          Length = 596

 Score =  302 bits (156), Expect = 1e-86
 Identities = 189/200 (94%), Gaps = 4/200 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttaataatcgtaagtacctccaggggctcttgagagtatcaagcaagctgtgtgcca 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cagttaataatcttaagtacctccaggggctcttgagagtatcaagcaagctgtgtgcca 337

                                                                       
Query: 61  aatgctgagcaaggaacctggacatggaaagtgtcatgggctccttatcactgctcagtg 120
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 336 aatgctgagcaaggaacctggacatgaaaa-tgtcatgggctccttatcactgctcagtg 278

                                                                       
Query: 121 cttatgggaggctctctcttccatttttcacacagagccctccaccacatctggaaatca 180
           |||||||||||||||| ||||||| | ||||||||| | |||||||||||||||||||||
Sbjct: 277 cttatgggaggctctcccttccatgtatcacacagaacactccaccacatctggaaatca 218

                               
Query: 181 atagtggcctatcccctggg 200
           |||||| || ||||| ||||
Sbjct: 217 atagtg-cc-atccc-tggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 596
Length adjustment: 8
Effective length of query: 192
Effective length of database: 588
Effective search space:   112896
Effective search space used:   112896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)