Query= MSMg01no540_k15.b1 MSMg01no540_k15.b1 CHROMAT_FILE:
MSMg01no540_k15.b1 PHD_FILE: MSMg01no540_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:01 2005
(546 letters)
>mm_chr12_64902433_64903378
Length = 946
Score = 1025 bits (530), Expect = 0.0
Identities = 539/542 (99%)
Strand = Plus / Plus
Query: 5 gaattcaaagactaaccccccaaaaatcgttaaaatgcagtaaaatttttcagtattcag 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagaccaaccccccaaaaatcgttaaaatgcagtaaaatttttcagtattcag 264
Query: 65 ctaaaatattttcagtattttcttagattcctacttatacttgatccatatgcttcacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaaaatattttcagtattttcttagattcctacttatacttgatccatatgcttcacag 324
Query: 125 aatgatcatggtttaaggtcctgatacctaatctgctgccatgtcttatcttgaaattca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgatcatggtttaaggtcctgatacctaatctgctgccatgtcttatcttgaaattca 384
Query: 185 tgtgcccacctgtgctgactattccaaattgttgggttcagtctgagcgtcacatacaca 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 tgtgcccacctgtgctgactattccaaattgttgagttcagtctgagcgtcacatacaca 444
Query: 245 taaggaacctgtttgcataactttatcaccatgtacagaagaaaattcagaattttcttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaggaacctgtttgcataactttatcaccatgtacagaagaaaattcagaattttcttc 504
Query: 305 tttatttctgattattagatcaagatacaggctattagttatccatgccaacagggatat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttatttctgattattagatcaagatacaggctattagttatccatgccaacagggatat 564
Query: 365 gatctgaggaggacatgttcataggtactaaagtcactgctgcttttgatatagggaaac 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatctgaggaggacttgttcataggtactaaagtcactgctgcttttgatatagggaaac 624
Query: 425 tgactctaaactttctcctctgagttctgtggcagaccaagctatccttatgtttcacaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgactctaaactttctcctctgagttctgtggcagaccaagctatccttatgtttcacaa 684
Query: 485 acacagttgcttacatggtgtgatttaaaaaggcaatgattttgagtagtatttgatata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acacagttgcttacatggtgtgatttaaaaaggcaatgattttgagtagtatttgatata 744
Query: 545 gt 546
||
Sbjct: 745 gt 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_k15.g1 MSMg01no540_k15.g1 CHROMAT_FILE:
MSMg01no540_k15.g1 PHD_FILE: MSMg01no540_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:01 2005
(626 letters)
>mm_chr6_76831732_76832764
Length = 1033
Score = 588 bits (304), Expect = e-172
Identities = 556/650 (85%), Gaps = 41/650 (6%)
Strand = Plus / Minus
Query: 1 aaggctatggattccttctaggacaataggcttcaaacaagaaagccttttctgt--ctg 58
||||| |||||||||||||||||||||||||| ||||||||||||| |||||| | ||
Sbjct: 833 aaggcaatggattccttctaggacaataggctacaaacaagaaagctttttctttccctc 774
Query: 59 c-ccccctttcgttttcattttgattcca-tttttataagcatacctgc---ctatgtgt 113
| ||||||||| ||||||||||||||||| ||||| ||||||||||||| || |||
Sbjct: 773 ctccccctttctttttcattttgattccattttttgtaagcatacctgctgact---tgt 717
Query: 114 atgtctctggcctggggaaattaagca-aacagtgtctgtttgaatgtaagatgagatga 172
|| ||||||| ||||||||||||| | ||||||||||||||| |||| ||| |||||||
Sbjct: 716 ctgcctctggcatggggaaattaag-agaacagtgtctgtttgcatgttagacgagatga 658
Query: 173 gatcaatgctattgctctat-aggtagcctgggaa-gagacagatg--aa-ttctgacct 227
|||||||||| || ||||| | ||||||| |||| | ||||| || || ||||| |||
Sbjct: 657 gatcaatgctgctggtctatca-gtagcctcggaaggggacaggtgacaatttctgtcct 599
Query: 228 gaggtggcacagagctgccctttgtgacattctcttgaagctgggcaaagagttcacact 287
||||||| ||||||||| |||||| |||||||||| ||| |||||||||||||||||||
Sbjct: 598 gaggtggaacagagctgtcctttgcaacattctcttaaagttgggcaaagagttcacact 539
Query: 288 gagatattcatgggaat--gagcaagatgagaaaaataaacttaactctacaaaagcaaa 345
| ||| |||| |||| | ||| |||| | ||||||||||||||||||||||||||||
Sbjct: 538 gtgatgttcacgggagtgggag--ggatggggaaaataaacttaactctacaaaagcaaa 481
Query: 346 ttctaatgcatgcaagaatcattaggttggcaggtatattcataagtgaaaaacccagag 405
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 480 ctctaatgcatgcaagaaccattaggttggcaggtatattcataagtgaaaaacctggaa 421
Query: 406 gtgtaatggtagaacataagga--ctgtactgcttctgtttcagttcaaaaatgtact-g 462
||||||||||||||||||| | ||||||||||||||||| ||| ||||| |||||| |
Sbjct: 420 gtgtaatggtagaacataa--aacctgtactgcttctgtttgagtgcaaaactgtactag 363
Query: 463 tccaatacactgaggtat-t---ctacaaattgaacaatttaacctcaatgtcatgtatc 518
||||||| |||| || | | | |||||||||| | ||||||||||||||| ||||||
Sbjct: 362 -ccaatacgctgaagtgtgtggcccacaaattgaa-attttaacctcaatgtcctgtatc 305
Query: 519 catgttatcatgtggattcttaactgaggagaaagc-aactcattccatgc-caaatgtt 576
|||| | ||||||||||||||||||||||||||| | ||||||| || | | ||||||||
Sbjct: 304 catgctctcatgtggattcttaactgaggagaaa-ctaactcatcccgt-ctcaaatgtt 247
Query: 577 tctttaacctgcattctttctgttcgttcttcctggtagtgccattacta 626
||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct: 246 tctttaatctgca----ttctgttctttcttcctggtagtgccattacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1033
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1023
Effective search space: 630168
Effective search space used: 630168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
