BAC Information

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BAC

Clone NameMSMg01-542E19
Chromosome6 (Build37)
Map Location 18,995,000 - 18,995,671
singlet/doubletsinglet
Overlap geneLOC626180
Upstream geneAsz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542E19.T7 (MSMg01no542_e19.b1)MSMg01-542E19.TJ (MSMg01no542_e19.g1)
ACCAG608108AG608109
length758759
length of high quality
(start - end)		711 (48 - 758)672 (75 - 746)
definitionCHROMAT_FILE: MSMg01no542_e19.b1 PHD_FILE: MSMg01no542_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:17 2005CHROMAT_FILE: MSMg01no542_e19.g1 PHD_FILE: MSMg01no542_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTGTTTATTCATTGTACATCTTGATCATCTTGCCCCATTTC
CAGTTCTCCTATCACACAGTCTTTTTTTTCATTTGTCCCTCCCCTTCTCC
TCTGAAAGCATGCCTCACTTCCCCCTGAGTATTCTGTAAATCCTGGTACA
TCAAGTCTCGTTGTATTAGGTTTATCTTCTCCTATTGAGGCCAGACTGAG
CAGCCCAGTCAGGCAGTGGGCTCCAATTTTGGGGGGACCCACAAAAAGAC
TGAACTGCATGTCTGCTACATATGTGTCAGGGGTTACCCACAAATGACTG
GACTGCATGTCTGCTACATATGTGTCAGGGACTTCATTCCAGCACCTGTA
TTCTCTTCAGTTAGTGACTTAGTCTCTGAGAGCCCCAAGGGTCCAGGTTA
GTTGACTCTGTGGTCTTCCTGTATAGTTCCTTTCCTCATTGGGGCCTTCA
ATCCTTTTCCCAACTCATCCATAAAAGTTCACAAGCTTCATCCAGTGTTA
GGCTGTAGCCTCTGCATTTGTTCCAGGTGGTTGCTGGGTGGAGCCTCTCA
AAGTACAGTTATATTAGGCTCCTATATGCAAGTATAACAGATTATCATTA
ATAGTCTTATTAGTCTCAAGGTTTGGTGCTTGCCCATCAATGGGTTTCAA
GTTATCGGTTAGCCATTCCATCAGTCTCTGCTCCATCTTTGTTTGTGCAC
ACCTATTA

NCGATGATGGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTTGTAAAATTAAAGATGTTTGAT
GTAATATCTGGTCTATGTTTTGTTTATTCCTTATGTAAGTATTATTTTAA
CTGCAGTCCTGCTCTGTTTATTAATCTATAGTACATTCAGTCTATCATAT
GTATCACAAGAGTAACGAATCACTCCTGCTCCTTGCTTGTCAATCACTGA
CAGTGAAGCACTGTTTCCACTTCATTCTCACGATGTTTATATTTACCTCT
GGACATGCCCAGTATTTCTCACTCTATATATTTCTAAGAGATGGGAAGTA
GTCTTTGTTTCTACTTTCAGAAACACAATATTTTTGAGATATTTCTTATA
GTGTGCACTATCAAAAGATTAAGATTTACAAATATATTCATATGGACTTC
TAAGAAAGGCTAGGTTAAGGATGAGTTGTTTAGTCCCTCAATATTTTTAT
TTTGGAGATTTAATACCCTTGGATATCTATAAAGTCTGTTGTGGGAATAC
GTTATGGAGAATGTAAATAACCTCTGTCTCTTTTTCATTTATTTAAATTA
ATGCAGATCAGCATAGCGACTGTTCTAGTGGGTTCGCATCGTGTCATAAA
GGTGATGGGAACATCACTCTCTCACGCGGTCTCGCTATAAAATCAGAAAA
TACAAGAAAGGTACCTTATTGACATCTGGTAAATGAGGTCTTTGGCCATA
CATTAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_e19.g1 MSMg01no542_e19.g1 CHROMAT_FILE:
MSMg01no542_e19.g1 PHD_FILE: MSMg01no542_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:17 2005
         (672 letters)



>mm_chr6_18994800_18995871
          Length = 1072

 Score = 1299 bits (672), Expect = 0.0
 Identities = 672/672 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttgtaaaattaaagatgtttgatgtaatatctggtctatgttttgtttattccttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttgtaaaattaaagatgtttgatgtaatatctggtctatgttttgtttattccttat 260

                                                                       
Query: 61  gtaagtattattttaactgcagtcctgctctgtttattaatctatagtacattcagtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagtattattttaactgcagtcctgctctgtttattaatctatagtacattcagtcta 320

                                                                       
Query: 121 tcatatgtatcacaagagtaacgaatcactcctgctccttgcttgtcaatcactgacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatatgtatcacaagagtaacgaatcactcctgctccttgcttgtcaatcactgacagt 380

                                                                       
Query: 181 gaagcactgtttccacttcattctcacgatgtttatatttacctctggacatgcccagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagcactgtttccacttcattctcacgatgtttatatttacctctggacatgcccagta 440

                                                                       
Query: 241 tttctcactctatatatttctaagagatgggaagtagtctttgtttctactttcagaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctcactctatatatttctaagagatgggaagtagtctttgtttctactttcagaaac 500

                                                                       
Query: 301 acaatatttttgagatatttcttatagtgtgcactatcaaaagattaagatttacaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatatttttgagatatttcttatagtgtgcactatcaaaagattaagatttacaaata 560

                                                                       
Query: 361 tattcatatggacttctaagaaaggctaggttaaggatgagttgtttagtccctcaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattcatatggacttctaagaaaggctaggttaaggatgagttgtttagtccctcaatat 620

                                                                       
Query: 421 ttttattttggagatttaatacccttggatatctataaagtctgttgtgggaatacgtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttattttggagatttaatacccttggatatctataaagtctgttgtgggaatacgtta 680

                                                                       
Query: 481 tggagaatgtaaataacctctgtctctttttcatttatttaaattaatgcagatcagcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggagaatgtaaataacctctgtctctttttcatttatttaaattaatgcagatcagcat 740

                                                                       
Query: 541 agcgactgttctagtgggttcgcatcgtgtcataaaggtgatgggaacatcactctctca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcgactgttctagtgggttcgcatcgtgtcataaaggtgatgggaacatcactctctca 800

                                                                       
Query: 601 cgcggtctcgctataaaatcagaaaatacaagaaaggtaccttattgacatctggtaaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cgcggtctcgctataaaatcagaaaatacaagaaaggtaccttattgacatctggtaaat 860

                       
Query: 661 gaggtctttggc 672
           ||||||||||||
Sbjct: 861 gaggtctttggc 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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