Query= MSMg01no542_g18.b1 MSMg01no542_g18.b1 CHROMAT_FILE:
MSMg01no542_g18.b1 PHD_FILE: MSMg01no542_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:27 2005
(680 letters)
>mm_chr6_47919228_47920307
Length = 1080
Score = 1160 bits (600), Expect = 0.0
Identities = 660/694 (95%), Gaps = 26/694 (3%)
Strand = Plus / Minus
Query: 10 ttcactatgtataccagaatggccttgaactcaagaaactcccctgtgtctggctcctta 69
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 ttcactatgtagaccagaatggccttgaactcaagaaactcccctgtgtctggctcctta 1021
Query: 70 gtgctaggattttttttttaaagatttatttatttaatgtatgtgagtacactgtagctg 129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1020 gtgctaggattttttttttaaagatttatttatttaatgtatgtgagtacactgtaactg 961
Query: 130 tcttcagacacaccagaagagggcatcggatccccattacaggtggttgtgagccatcat 189
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 960 tcttcagacacaccagaagagggcatcggatccccattacaggtcgttgtgagccatcat 901
Query: 190 gtggttgctgggaattgaagtcaggacctctggaagagcagtcagtgctcttagccgctg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gtggttgctgggaattgaagtcaggacctctggaagagcagtcagtgctcttagccgctg 841
Query: 250 agtcctctctccaatgcagtgctaggattaaaggtgtctatcgagttttcctgctttttt 309
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 agtcctctctccaatccagtgctaggattaaaggtgtctatcgagttttcctgctttttt 781
Query: 310 taaaacaaggtttcatatagtcaagtgatcttcacctcactctacagctgaaactggcct 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 taaaacaaggtttcatatagtcaagtgatcttcacctcactctacagctgaaactggcct 721
Query: 370 tgaactcctgatcttgcctttgggattataggtgtatgtgacatgcctggtaaagtcttc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tgaactcctgatcttgcctttgggattataggtgtatgtgacatgcctggtaaagtcttc 661
Query: 430 tgttttgaacaagattttgtcccccaaatattgctaatcctgttacttacagttaagtgg 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tgttttgaacaagattttgtcccccaaatattgctaatcctgttacttacagttaagtgg 601
Query: 490 gcttttgttgctgttgttatttataatccagccattgttcccccccccccagtccccact 549
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 600 gcttttgttgctgttgttatttataatccagccattgttccccctccc--agtccccact 543
Query: 550 tccacagttcctcatcccatcctccca-ccccccacccccac------------------ 590
|||||| ||||||||||||||| |||| |||||| |||||||
Sbjct: 542 tccacaattcctcatcccatccccccaaccccccccccccacacacacacacacacactc 483
Query: 591 ---ctctctgagagcatgtttcctaccaccaggcttcccctctccctgtagcctcaagtt 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cacctctctgagagcatgtttcctaccaccaggcttcccctctccctgtagcctcaagtt 423
Query: 648 tctcgaggattaggtg-catcttctcccactgag 680
|||||||||||||| | |||||||||||||||||
Sbjct: 422 tctcgaggattagg-gacatcttctcccactgag 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_g18.g1 MSMg01no542_g18.g1 CHROMAT_FILE:
MSMg01no542_g18.g1 PHD_FILE: MSMg01no542_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:27 2005
(631 letters)
>mm_chr6_47744853_47745883
Length = 1031
Score = 1145 bits (592), Expect = 0.0
Identities = 622/632 (98%), Gaps = 2/632 (0%)
Strand = Plus / Plus
Query: 1 cttaggtaatgtgttcctcagacaactcctcaatcaggtaagggattttggtatgtggaa 60
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cttaggtaatgtgttcttcagacaactcctcaatcaggtaaggggttttggtatgtggaa 260
Query: 61 actgacttgctaaaagtgccttttgagtaacaataaagaaactctgcagcagttagtcca 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 actgacttgctaaaagtgccttttgagcaacaataaagaaactctgcagcagttagtcca 320
Query: 121 tcagaggctgaccctccctgctgagaagcctcaactctgcctatgtatgtacgtatgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagaggctgaccctccctgctgagaagcctcaactctgcctatgtatgtacgtatgtgt 380
Query: 181 tatatgtgagtacactgtagctgtcttcagacacaccagaagagggcatcggatctcatt 240
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatatgtaagcacactgtagctgtcttcagacacaccagaagagggcatcggatctcatt 440
Query: 241 acagatggttgggagccaccatgtggttgctgggatttgaactcaggacctctggaagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagatggttgggagccaccatgtggttgctgggatttgaactcaggacctctggaagag 500
Query: 301 tgtttgcctgatcatgaggtgtaattcagaacatttgacattttgtcatgcttagttgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttgcctgatcatgaggtgtaattcagaacatttgacattttgtcatgcttagttgtt 560
Query: 361 atctcttagaagtcagctcttttgttttgttttttgaggcaggtttttctgtgtaagcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctcttagaagtcagctcttttgttttgttttttgaggcaggtttttctgtgtaagcct 620
Query: 421 ggctgtcctagaactcactctgtagaccaggatggccttgaactcagatccacctgcctc 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggttgtcctagaactcactctgtagaccaggatggccttgaactcagatccacctgcctc 680
Query: 481 tgtgctgggattaaaggtgtgagccaccacacccagctgtctatcagttattgaggttat 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgctgggattaaagatgtgagccaccacacccagctgtctatcagttattgaggttat 740
Query: 541 tttaccccatgcctccccccaccctcccatttattagcagcctaccacaacttttctaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttaccccatgcctccccccaccctcccatttattagcagcctaccacaacttttctaca 800
Query: 601 caacttttctaacttttctttttt-aactgtc 631
||||||||||| ||||| |||||| |||||||
Sbjct: 801 caacttttcta-cttttttttttttaactgtc 831
Score = 132 bits (68), Expect = 1e-34
Identities = 95/104 (91%), Gaps = 4/104 (3%)
Strand = Plus / Plus
Query: 201 ctgtcttcagacacaccagaagagggca-tcggatctcattacagatggttgggagccac 259
|||||||||||||| ||||||||||| | || |||||| ||||||||||||| |||||||
Sbjct: 827 ctgtcttcagacactccagaagaggg-agtcagatctcgttacagatggttgtgagccac 885
Query: 260 catgtggttgctgggatttgaactcaggacctct-ggaagagtg 302
||||||||||||||||||||||||| |||||| | |||||||||
Sbjct: 886 catgtggttgctgggatttgaactctggacct-tcggaagagtg 928
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
