BAC Information

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BAC

Clone NameMSMg01-542K01
Chromosome6 (Build37)
Map Location 42,184,654 - 42,184,969
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144
Downstream geneGstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542K01.T7 (MSMg01no542_k01.b1)MSMg01-542K01.TJ (MSMg01no542_k01.g1)
ACCAG608356AG608357
length766764
length of high quality
(start - end)		569 (44 - 612)625 (74 - 698)
definitionCHROMAT_FILE: MSMg01no542_k01.b1 PHD_FILE: MSMg01no542_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:43 2005CHROMAT_FILE: MSMg01no542_k01.g1 PHD_FILE: MSMg01no542_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTC
GCCAACATCGAAGTAAATGGTGAGATGCTGGAAGCAATCCCACTAAAATC
AGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTATTCAACATTGTAC
TTGAAGTCCTAGCCAGAGCAATTCAACAACAAAAAGAGATCAAGGGGATA
CAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATACGTGACCCTAAAAATTTCTGTTGTTTTTTGTTGTTGAAGT
CTAGCCCTAGTCGGTGGTGATCTGATAATATGCATGGGATTTTTTTAATC
TTCTATCTTTTGAGAATTGATGGTCAGTTTTGGAAAAAGTACCATGAGGT
GCTAAGAAGAATGTAATTCATTTGTTTTAGGTTGAAATGCTCTGTATATA
TTTGTTAAATCCATTTTGGTTCATAACCTCTATTAGCTGCATTATATATC
TGTTCAGTTTCTGTTTGGTCCATTGGTGAGAGCTGGGTATTGAAGTCTTC
CACTCTTATTGTGTGAGGTTCAGTGTGTGTCTTGAGCTTTAGTAGTTTCT
TATGTGAATGTGGGTGTCCTTCCATTTGGAGCATAGATGTTCACAATTGA
GACTCTCTTGGTGGATTTTTCCTTTGATGAATATGAAGTGCCTTTCCTAT
CTCATGTGAAAACTTT

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGCCTGGTGAAGACCCAGTTTCTGG
TTCACAGGCAGTCATCTCTGGGGCAGGATTTTCTTCTACTGAAACTAAAA
ATTTAAAAGTACAGGGCTTAAACCAAGTCCTTCTATTACTATTTTATTAT
TTTTTTAAAAAATGTATTGAGAGAGGGGGTGGCATATGCATCTGGGCACA
TGTATGTCAGAGGTCAATTTACAGGTGTTAGTTCACCCTTTCATTTTCAA
GAATGAAACTTGGGGGTTTTCAGTTTAGTAGTGAGTGTCTTTAGCCACTG
AGCCATCTTAGTGGCCCTGTGCTCCGTGTTTTCTCAAAATTTCTCATAAA
AGATTTATTTATTATATGCAAGTACACTGTAGCTGTCTTCAGACACACCA
GAAGAGGGCATCAGATCTCATGGATGGTTGTGAGTCACCATGTGATTGCT
GGGATTTGAACTCAGGGCCTTCTGAAGAGCAGTCAGTGCTTGTGACCACT
GAGACATCTCTCTAGCCTTCTATTACTGTTTTTATAAACTGATCTGAGAT
GATTAAGCCTGTGAGTTAAGGGCCAAATAGCAAACTTATGATGGTGTTTC
TGAGATGTTTCAATTAGAAATGGCCAAGAGTAGTCAAGGCTTAACAGTTC
AGAGATGCTTGGGTAGATAGATAGTCTTTGAAGGTGTCAGAAGTCCACAG
AATATGATGCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_k01.g1 MSMg01no542_k01.g1 CHROMAT_FILE:
MSMg01no542_k01.g1 PHD_FILE: MSMg01no542_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:43 2005
         (625 letters)



>mm_chr6_42184654_42185678
          Length = 1025

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcctggtgaagacccagtttctggttcacaggcagtcatctctggggcaggattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agtgcctggtgaagacccagtttctggttcacaggcagtcatctctggggcaggattttc 257

                                                                       
Query: 61  ttctactgaaactaaaaatttaaaagtacagggcttaaaccaagtccttctattactatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttctactgaaactaaaaatttaaaagtacagggcttaaaccaagtccttctattactatt 197

                                                                       
Query: 121 ttattatttttttaaaaaatgtattgagagagggggtggcatatgcatctgggcacatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttattatttttttaaaaaatgtattgagagagggggtggcatatgcatctgggcacatgt 137

                                                                       
Query: 181 atgtcagaggtcaatttacaggtgttagttcaccctttcattttcaagaatgaaacttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 atgtcagaggtcaatttacaggtgttagttcaccctttcattttcaagaatgaaacttgg 77

                                                                       
Query: 241 gggttttcagtttagtagtgagtgtctttagccactgagccatcttagtggccctgtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  gggttttcagtttagtagtgagtgtctttagccactgagccatcttagtggccctgtgct 17

                           
Query: 301 ccgtgttttctcaaaa 316
           ||||||||||||||||
Sbjct: 16  ccgtgttttctcaaaa 1



 Score =  228 bits (118), Expect = 8e-64
 Identities = 157/170 (92%), Gaps = 3/170 (1%)
 Strand = Plus / Plus

                                                                        
Query: 145  tgagagagggggtggcatatgcatctgggcacatgtatgtcagaggtcaatttacaggtg 204
            ||||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||| |
Sbjct: 858  tgagagagggggtggcatacgcat-ttggcacatgtgtgtcagaggtcaatttacaggag 916

                                                                        
Query: 205  tt-agttcaccctttcattttcaagaatgaaacttgggggttttcagtttagtagtgagt 263
            ||  ||| |||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 917  ttgggtt-accctttcattttcaagaacaaaacttgggggttttcagtttagtagtgagt 975

                                                              
Query: 264  gtctttagccactgagccatcttagtggccctgtgctccgtgttttctca 313
            |||||||||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct: 976  gtctttagcctctgagccatcttggtgaccctgtgctccgtgttttctca 1025


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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