BAC Information

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BAC

Clone NameMSMg01-543K13
Chromosome6 (Build37)
Map Location 38,806,416 - 38,807,000
singlet/doubletsinglet
Overlap geneHipk2
Upstream geneLOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180
Downstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543K13.T7 (MSMg01no543_k13.b1)MSMg01-543K13.TJ (MSMg01no543_k13.g1)
ACCAG609142AG609143
length761756
length of high quality
(start - end)		132 (224 - 355)585 (77 - 661)
definitionCHROMAT_FILE: MSMg01no543_k13.b1 PHD_FILE: MSMg01no543_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:06 2005CHROMAT_FILE: MSMg01no543_k13.g1 PHD_FILE: MSMg01no543_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCAGAAGATCCGC
GGATTTCCCCCCCCTTTCCACACACACCAGAGGCTCAGATATTTGAACAC
TTGGTCCCTTTTGTGAAATCTTCCTAAGAGAAGTATGTCACCGGGAAAGG
GCTTCCACTGTTTGTAGGATCACCTCACTTCCTGCTTTCTCTCTGCTTCC
TGCTTCTGTTTGAGGATGTCAGTTCTCAATTTCCCTATCTGGCCACTGTG
TTTGCTGCTTGCTGCCATGCTTCCCCACCAAGATGGACTCTAATCTCTCT
GGAACTGTAAGCTGAAACAAGCTCTTTCTTCTATAAATTGCTTTTGAACA
TGGTTTTCTATCACATTAGCATCATCTACAGAAAAATAACTAATATCCTT
GTTGGTGTGCTAAGCACCCTGACCAAAAGCACTTTATGGAGGAAAGGGTT
TCTTTCAATTTACAGCTGCCACTATCAATGAAAGTCATGCCAGGACCTCT
ATGTATGAATGTGCAAACACGATCTGATGCACATAAAGAATGTGCAGGGA
CATCCTTTGCTGGCCTGCTTCCAAGCTTATGTCTACCTACCTTTCTTATA
TAATCCAGGGATACCTGTTTAGCGATGAAACTTGCCACACCAGGTTAGGG
ACATTCATCTTTTTCTTACCCCCTTGAATATTTCCCCCCTTGACATGCTC
CCCGTGTTCACCCCGACATTATGTAACTTTTCCCACCCATGTTCTCCTTT
TCTCTTACGGG

CCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTGTCTCACTTAACCAATGAA
TGATCAATTAGTTAATCTCTTCCTCCTTTCCTCTGTTTTTTCCGTTCCTC
CCTCTTTCCCTCCAATAAAAACATGCCTAATATGTAATAATCTCTAAATC
TTTGGACCATATCCAAAAGTCTATGCCAACCGTTCAACACAAAGAATCTG
ACCTAATTAAAACATCATCTTCAAAATATTTATATTTTTAAAAAGTATTG
TTTTTCTGACATTTAATCATTTCCCTTTCTTTACAAACTATATGTATTTT
AGCTATGATGTCTTAAAGATGTGCATGGAAGATAAATGGAATTACAATAT
GCCCCCTGCCTACCATGTGTATCAGATAATGCTCTCTCATATGTTCTTTA
ATTTTTATTTCTATTTTCATGTATATGAGTATTTTGCTTATACATGTGCA
TGCAAGCCAGAAGAGAACAACAAATCCCCTGGGTTTGAAGTTACAGGTGG
TTGTGAGCTACCACAGGGGTGCAGGGACCCGAACCCAGGTCCTCTGCAAG
AACAGCCAGTGCTGGCCTGCAACTCAGAGATCCACCTGCCTGTGCCTCCC
AAGTACTAGGGTTAAAGATGTGTGCCACCACCATCCAGCTTTACAACTGA
GTCTTAATTGGCATCACTTTTTTCTGTAACACCTTACAAAATAAATTTAG
AAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_k13.g1 MSMg01no543_k13.g1 CHROMAT_FILE:
MSMg01no543_k13.g1 PHD_FILE: MSMg01no543_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:06 2005
         (585 letters)



>mm_chr6_38806216_38807200
          Length = 985

 Score = 1131 bits (585), Expect = 0.0
 Identities = 585/585 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttgtctcacttaaccaatgaatgatcaattagttaatctcttcctcctttcctctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttgtctcacttaaccaatgaatgatcaattagttaatctcttcctcctttcctctgt 260

                                                                       
Query: 61  tttttccgttcctccctctttccctccaataaaaacatgcctaatatgtaataatctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttccgttcctccctctttccctccaataaaaacatgcctaatatgtaataatctcta 320

                                                                       
Query: 121 aatctttggaccatatccaaaagtctatgccaaccgttcaacacaaagaatctgacctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctttggaccatatccaaaagtctatgccaaccgttcaacacaaagaatctgacctaa 380

                                                                       
Query: 181 ttaaaacatcatcttcaaaatatttatatttttaaaaagtattgtttttctgacatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaaacatcatcttcaaaatatttatatttttaaaaagtattgtttttctgacatttaa 440

                                                                       
Query: 241 tcatttccctttctttacaaactatatgtattttagctatgatgtcttaaagatgtgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatttccctttctttacaaactatatgtattttagctatgatgtcttaaagatgtgcat 500

                                                                       
Query: 301 ggaagataaatggaattacaatatgccccctgcctaccatgtgtatcagataatgctctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagataaatggaattacaatatgccccctgcctaccatgtgtatcagataatgctctc 560

                                                                       
Query: 361 tcatatgttctttaatttttatttctattttcatgtatatgagtattttgcttatacatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatatgttctttaatttttatttctattttcatgtatatgagtattttgcttatacatg 620

                                                                       
Query: 421 tgcatgcaagccagaagagaacaacaaatcccctgggtttgaagttacaggtggttgtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcatgcaagccagaagagaacaacaaatcccctgggtttgaagttacaggtggttgtga 680

                                                                       
Query: 481 gctaccacaggggtgcagggacccgaacccaggtcctctgcaagaacagccagtgctggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctaccacaggggtgcagggacccgaacccaggtcctctgcaagaacagccagtgctggc 740

                                                        
Query: 541 ctgcaactcagagatccacctgcctgtgcctcccaagtactaggg 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgcaactcagagatccacctgcctgtgcctcccaagtactaggg 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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