Query= MSMg01no544_a01.b1 MSMg01no544_a01.b1 CHROMAT_FILE:
MSMg01no544_a01.b1 PHD_FILE: MSMg01no544_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:32 2005
(692 letters)
>mm_chr6_106813440_106814531
Length = 1092
Score = 1042 bits (539), Expect = 0.0
Identities = 585/608 (96%), Gaps = 12/608 (1%)
Strand = Plus / Minus
Query: 2 gcggaattcatcatacatagtctcacagtagacaggagcaaatgatcttaaaactgtgtc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gcggaattcatcatacatagtctcacagtagacaggagcaaatgatcttaaaactgtgtc 537
Query: 62 tatatggagactaaggggaaggcttggtggctttaaagaagctttcaatagaagctaagt 121
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 536 tatatggagactaaggggaaggctcggtggctttaaagaagctttcaatagaagctgagt 477
Query: 122 accacatgacttccatttgttgatgacaggtctgattctcttagctatggtgtttttcag 181
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 476 accacatgacttccatttgttgatgacagatctgattctcttagctatggtgtttttaag 417
Query: 182 tccaggttagtaggttgttcactaagcacaaaatatgcagtacatgagtattcccttcat 241
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tccaggttggtaggttgttcactaagcacaaaatatgcagtacatgagtattcccttcat 357
Query: 242 catccactgaattattaactcaattgttttcatctcttagcttacattttcttatataat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 356 catccactgaattattaactcaattgttttcatctcttagcttacattttcttttataat 297
Query: 302 aatcctgaattgtgattatcattgttctgacttttccatttttatttataaattatgtat 361
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 296 catcctgaatggtgattatcattgttctgacttttgcatttttatttataaattatgtat 237
Query: 362 ttgtggggacaagagtatgaattcctaaaagtattggtgtccatgaaaaccaaaggtatc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttgtggggacaagagtatgaattcctaaaagtattggtgtccatgaaaaccaaaggtatc 177
Query: 422 agaactctctgaaactggagttacaggcacccaacatggatgctgggaactgaacttgta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 agaactctctgaaactggagttacaggcacccaacatggatgctgggaactgaacttgta 117
Query: 482 gagtagaatatgttcttaaaccctgagctatctctccagctgtttgctattttgatttga 541
||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 116 gagtagaatatgttcttaaacactgagct------------gtttgctattttgatttga 69
Query: 542 aaggtggtgaaggcattaagttatacaagctcagaatcttagaatctgaatttaagtgcn 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaggtggtgaaggcattaagttatacaagctcagaatcttagaatctgaatttaagtgca 9
Query: 602 aagctctt 609
||||||||
Sbjct: 8 aagctctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_a01.g1 MSMg01no544_a01.g1 CHROMAT_FILE:
MSMg01no544_a01.g1 PHD_FILE: MSMg01no544_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:32 2005
(639 letters)
>mm_chr6_106639612_106640650
Length = 1039
Score = 1220 bits (631), Expect = 0.0
Identities = 637/639 (99%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgagccccattttttaatggggttatttgattttctggagtccacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgagccccattttttaatggggttatttgattttctggagtccacctt 260
Query: 61 cttgaattctttttatatattggttattagtcccctatctgatttaggataggtaaagat 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaattctttttatatattggatattagtcccctatctgatttaggataggtaaagat 320
Query: 121 cctttcccaatctgttggtggcctttttgtcttattgatggtgtcttttaccttacagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcccaatctgttggtggcctttttgtcttattgatggtgtcttttaccttacagaa 380
Query: 181 gctttgcagttttatgaggtcccatttgtattttctcgatcttacagcacaagccattgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttgcagttttatgaggtcccatttgtattttctcgatcttacagcacaagccattgc 440
Query: 241 tgttctattcaggaatttttcccctgtgcccatatctttgaggcttttccccactttctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttctattcaggaatttttcccctgtgcccatatctttgaggcttttccccactttctc 500
Query: 301 ttctataagtttcagtgtctctggttttatgtgtttcttaattatctcaccatcctaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctataagtttcagtgtctctggttttatgtgtttcttaattatctcaccatcctaata 560
Query: 361 accccttaaagaagaaattcctagaatctactgtgtctattagacctaactttgaagaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accccttaaagaagaaattcctagaatctactgtgtctattagacctaactttgaagaca 620
Query: 421 aggagatgtgttaagatgatatctctagaatttctaagcctgggatctgatctgtatgga 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggagatgtgttaagatgatacctctagaatttctaagcctgggatctgatctgtatgga 680
Query: 481 atctctttctgccccttgacctcagtttactttgcctggcaatcagcagatagacacagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctctttctgccccttgacctcagtttactttgcctggcaatcagcagatagacacagt 740
Query: 541 gagtgaaaataaagcattacaagaaaaggccatgaaggtaaagagaccatagagagccaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagtgaaaataaagcattacaagaaaaggccatgaaggtaaagagaccatagagagccaa 800
Query: 601 ggggcacttagaagaggcatgtcctttatataaaggcca 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggggcacttagaagaggcatgtcctttatataaaggcca 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
