GGTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCGCAAAGAAACCTGGTAAGATTTAACTAGGGTCACTTCA
TGTAAAGCGCCTTGCCATTCTAATATTTTTTTATATTTTCCAAAATTATA
CTTGTCTTATGAAATCAAATCTGAATATTTCAAATCCAATATGAATGATT
ATTACTTTCTGTAAACGGTAGGCTCATAAAATTAAAAATTTTAATGCCTA
ATTGTGTAATACTTTTTCAAATAGAACACACAGGGCATGTGTTATTCATT
TGTGTATGAGAAATTAATACCTACATACAAGTAAATATAATCGTATTTTC
TTCATATTTCCTATCTACTCCCTGCTCTTATTTCTTTGCATGCTTATTCC
CACTTTAGTGGGTTTTGTTTGTTTGTTTGTTTGTTTGTTTATAACCCATG
AAAGCCAGCTAGTGCTTCCCATCTGGGCATGTGCATGGGGCCATCTACTT
GAAAGTGGAAACCTACCAGTGCCCAGGGGCTCAAAAAAACTATTATCTTT
CCCATAAAAACATTCAATCAACTCCTGGACCTGCAGGATCATCTACGATT
TTTTAAAATATTTTATTAGGTATTTTCCTCATTTACATTTCAATGCTATC
CCAAAAGTCCCCCATACCCTCCCCCCCCCCACTGCCCTACCCACCCACTC
CCACTTTTTTGGCCCTGGCATTCCCCCTGTACTGGGGCATATAAAGTTTG
CA

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAACTGGTACTGGAATC
AAGGCCAAAACATCTAGTAAGGGTAGAAATAAGTTGTAAGGAAATAAAGC
TATTGATGTTGTTTCATTATATAGTCCTATTGTAAAGACTCATTCTAAAT
ATTTATGTTTATATCTATAGATTTGTGTTGCTTTTCAACCTTAGCGGTGT
TTCTTATTATGGAACTCAGTAGCTAATTCATAAGCTTATAATTTTTCTCA
ACACTGAGAATATGTGGTTTTGGTATTCACCCCCTATGAAACATCTCAAT
TAATACCCCCAGCCCCAGAACTAAGATGCAGGAAATATCAAGGTAGGGCA
GGTGAAATAATGTAAAAGCCAGAGTATGGGGGATAAATGTTATAAAAGGC
TGACCTCGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAA
GGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCC
CGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGC
CATCACTGGAAAGAGAGGACCATTGGACATGCAAACTATATGCCCCATTA
CAGGGGAACAACAGGGCCAAAAAGGGGGAGTGGTGGGGTAAGGAAAGTTG
GTGGGGNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTNNTTTTTTTTTTTT
TNT

Query= MSMg01no544_d10.b1 MSMg01no544_d10.b1 CHROMAT_FILE:
MSMg01no544_d10.b1 PHD_FILE: MSMg01no544_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:48 2005
         (593 letters)



>mm_chr6_14796756_14797749
          Length = 994

 Score = 1065 bits (551), Expect = 0.0
 Identities = 578/589 (98%), Gaps = 5/589 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcgcaaagaaacctggtaagatttaactagggtcacttcatgtaaagcgcctt 63
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcacaaagaaacctggtaagatttaactagggtcacttcatgtaaagcgcctt 263

                                                                       
Query: 64  gcca-ttctaatatttttttatattttccaaaattatacttgtcttatgaaatcaaatct 122
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gccaattctaatatttttttatattttccaaaattatacttgtcttatgaaatcaaatct 323

                                                                       
Query: 123 gaatatttcaaatccaatatgaatgattattactttctgtaaacggtaggctcataaaat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaatatttcaaatccaatatgaatgattattactttctgtaaacggtaggctcataaaat 383

                                                                       
Query: 183 taaaaattttaatgcctaattgtgtaatactttttcaaatagaacacacagggcatgtgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaaattttaatgcctaattgtgtaatactttttcaaatagaacacacagggcatgtgt 443

                                                                       
Query: 243 tattcatttgtgtatgagaaattaatacctacatacaagtaaatataatcgtattttctt 302
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattcatttgtatatgagaaattaatacctacatacaagtaaatataatcgtattttctt 503

                                                                       
Query: 303 catatttcctatctactccctgctcttatttctttgcatgcttattcccactttagtggg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catatttcctatctactccctgctcttatttctttgcatgcttattcccactttagtggg 563

                                                                       
Query: 363 ttttgtttgtttgtttgtttgtttgtttataacccatgaaagccagctagtgcttcccat 422
           ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||
Sbjct: 564 ttttgtttgtttgtttgtttgttt----ataacccatgaaagccagctagtgcttcccat 619

                                                                       
Query: 423 ctgggcatgtgcatggggccatctacttgaaagtggaaacctaccagtgcccaggggctc 482
           ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 ctgggcatgagcatggggccatctacttgaaagtagaaacctaccagtgcccaggggctc 679

                                                                       
Query: 483 aaaaaaactattatctttcccataaaaacattcaatcaactcctggacctgcaggatcat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaaaactattatctttcccataaaaacattcaatcaactcctggacctgcaggatcat 739

                                                            
Query: 543 ctacgattttttaaaatattttattaggtattttcctcatttacatttc 591
           |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctacaatttttaaaaatattttattaggtattttcctcatttacatttc 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space:   573672
Effective search space used:   573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)