BAC Information

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BAC

Clone NameMSMg01-544K16
Chromosome6 (Build37)
Map Location 49,353,784 - 49,354,358
singlet/doubletsinglet
Overlap geneStk31
Upstream geneKrba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik
Downstream geneLOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544K16.T7 (MSMg01no544_k16.b1)MSMg01-544K16.TJ (MSMg01no544_k16.g1)
ACCAG609912AG609913
length741755
length of high quality
(start - end)		598 (53 - 650)413 (85 - 497)
definitionCHROMAT_FILE: MSMg01no544_k16.b1 PHD_FILE: MSMg01no544_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:24 2005CHROMAT_FILE: MSMg01no544_k16.g1 PHD_FILE: MSMg01no544_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAATAAAGTTTCCAATATTATTAAATCATACTAAACAG
GTTCCTCAGAAACAAACTGGGTAATTGTAGTGACAGAAAATAAGCAAGTG
CTCAAAGAAAGACTAAGACATGTCTAGGAGACATGGAACCAACCTATGTT
CTTTGGCCAACTTCTGCTCCACTGGCCAGAAATGAAGAATTCAAACAGCA
AAAGTAAATAACAACAGCAAAAGACTTACAACCCGTGGCTTATCCACTAG
TCACACTAGTCACAGAAAAGAAATGACTCTTCCTTACAGAAAGACAATCA
ATAGATGTAGTAGGAATAAAGAAGGCTGAAAGGCCATCACTAGACCAGTA
CAATACCAAGAAAAGATAAAAATTTTCAGTGAAAAGTTAGGAAAAACAAG
ACTAGTCAATCCCATGTGTCTTTCTCTAAAACATTTATAATTACAAAAGA
AAAATATTAGGGGCTAGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGT
TCTTCCAGAGGTCCTAAATTCAATCCCCAGCAACTACATGGTAGCTCACA
ACCATCTCTAATAAGATCTGATATCCTCTTCTGGCATATCTTAAGACAGC
TACAGTGTAGCTGNTAAAATAAATAAATAAATAAATAAATCTTTTAAAAA
ATAAAAATATTTATTATATTTTTTAAGAAATGAACATCTCA

TGCTTTGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATCTTCATCTAAA
TACTACTAGCAGAATACTGGCTTCTGGGTAGCTTGGATGAGGGTTTTATA
GCACACACCCACAGTGACACAGTACTCCAACTGGGCCACATCTTCTAATA
GTGCTGTTCCCTGGGCTGAGCATATACAAACCACCACAGCCTTTATAACA
GTTGCGTTGGTTATTATGTCGCTTCATAGCAATACAACTCAAACAGATAT
ATTTGTGTGTGTATGTGTGTGCATGTTCACGTTATTGAAGAGGTCAGCTC
AGGGCATTTGGAAAATTCCACCAGACCCCTCCCTCCTGTCCTGGAAGAGA
AAGTTCACAGAACACTTAGGCACTACCTCCCCTCCAGAAGAGGGAGGCTT
AATTACATTCCTCACACCACTTGGGGGTGGGGGTGGGGGTGATANANNNN
NNNNNNNNNNNNNNNNNTNNNNNNNNNNNTNNNNNNNNNNTNTNNATTTT
TTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTATATTTTTAAAAAA
TTTTTTTTTTTTTTATTATTTATTTTTTTTTATATTATTTTTTTATTATA
TTATTTTTTAAAATTTTGTTTTTTTTATTATATTTTTAAAAATTTTTTAT
TTTAATATTATAATTTTTTTAATATGTTTTTTTTAAAATATTTTGTTTTT
TTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_k16.b1 MSMg01no544_k16.b1 CHROMAT_FILE:
MSMg01no544_k16.b1 PHD_FILE: MSMg01no544_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:24 2005
         (598 letters)



>mm_chr6_49353372_49354369
          Length = 998

 Score = 1073 bits (555), Expect = 0.0
 Identities = 570/575 (99%)
 Strand = Plus / Minus

                                                                       
Query: 24  aatattattaaatcatactaaacaggttcctcagaaacaaactgggtaattgtagtgaca 83
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 987 aatattattaaatcatactaagcaggttcctcagaaacaaactgggtaattgtagtgaca 928

                                                                       
Query: 84  gaaaataagcaagtgctcaaagaaagactaagacatgtctaggagacatggaaccaacct 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 gaaaataagcaagtgctcaaagaaagactaagacatgtctaggagacatggaaccaacct 868

                                                                       
Query: 144 atgttctttggccaacttctgctccactggccagaaatgaagaattcaaacagcaaaagt 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 atgttctttggccaacttctgctccactggccagaaatgaagaattcaaacagcaaaagt 808

                                                                       
Query: 204 aaataacaacagcaaaagacttacaacccgtggcttatccactagtcacactagtcacag 263
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 807 aaatgacaacagcaaaagacttacaacctgtggcttatccactagtcacactagtcacag 748

                                                                       
Query: 264 aaaagaaatgactcttccttacagaaagacaatcaatagatgtagtaggaataaagaagg 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aaaagaaatgactcttccttacagaaagacaatcaatagatgtagtaggaataaagaagg 688

                                                                       
Query: 324 ctgaaaggccatcactagaccagtacaataccaagaaaagataaaaattttcagtgaaaa 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctgaaaggccatcactagaccagtacaataccaagaaaagataaaaattttcagtgaaaa 628

                                                                       
Query: 384 gttaggaaaaacaagactagtcaatcccatgtgtctttctctaaaacatttataattaca 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gttaggaaaaacaagactagtcaatcccatgtgtctttctctaaaacatttataattaca 568

                                                                       
Query: 444 aaagaaaaatattaggggctagagagatggctcagtggttaagagcactgactgttcttc 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaagaaaaatattaggggctagagagatggctcagtggttaagagcactgactgttcttc 508

                                                                       
Query: 504 cagaggtcctaaattcaatccccagcaactacatggtagctcacaaccatctctaataag 563
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 507 cagaggtcctaaattcaattcccagcaactacatggtggctcacaaccatctctaataag 448

                                              
Query: 564 atctgatatcctcttctggcatatcttaagacagc 598
           |||||||||||||||||||||||||||||||||||
Sbjct: 447 atctgatatcctcttctggcatatcttaagacagc 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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