BAC Information

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BAC

Clone NameMSMg01-545B23
Chromosome6 (Build37)
Map Location 69,312,565 - 69,312,789
singlet/doubletsinglet
Overlap geneIgk, Igkv13-64
Upstream geneLOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65
Downstream geneEG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545B23.T7 (MSMg01no545_b23.b1)MSMg01-545B23.TJ (MSMg01no545_b23.g1)
ACCAG610260AG610261
length654739
length of high quality
(start - end)
235 (38 - 272)673 (67 - 739)
definitionCHROMAT_FILE: MSMg01no545_b23.b1 PHD_FILE: MSMg01no545_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:01 2005CHROMAT_FILE: MSMg01no545_b23.g1 PHD_FILE: MSMg01no545_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCA
TGACATCCTTCCTTACCCAGGAATCAGAATAGTAAGATCAGCAGAAGTTG
AGAGGGAGAACATCATGGTCTGTGATGTTACCTGACATTGACTGACTCCT
AGAAAGGATGTGACCAGTCTATTAAGAAGTTCTTTTGTGAATGGGTCACC
TCACTTAGGATGGTATCCTCTAGATGCATCCATTTGTCTAAGAACCTCAT
AAATTCATTGTTTTTAATTGTTGAATAGTACTCCAATTGTGTAAATGTAC
CACATTTTCTGTATTCATTTTTCTGTTGAGGGAACAACTGGGGTTTTTCC
CACTTCCGGCTATTATAAATAAAGGTTTCAATGGTACAATAGGGAAACAG
GGGGCCCTTATTTAAAGTTTGGAAAACTCCTTTTGGGGTATTTTGCCCCC
GAAAAAAGGGATTTTTCCCGGGATCTTAACCCTGGGGGGGAAACCCCCCC
CTGGGGGGGGGGGCCCCCCATTCCCCAAAAAAAAACAACCCTGGAATTTT
GGGGCCCCCGTGTTAAAATGCCCCCCCAAAAATTTTTTTTAACTCCCCCC
CAATAATTTTTTTTTTTTAAAAACAACCTTTATATCCTCCCGCGGGAGAA
AAAA
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAAAGAAAGCAAGGACGGACTTGTAGGTCTTCTT
GGAGGCCAAGTAGACCAAGGGTCTAGGGACTACTCATTTTCAAGTGTTAA
GCCTGAAGACTGGTAATACTGACTTGAAAAATATGTGTAGTCGTGCCATA
TATTGTGAAAATTGTGAAAAGGAAGATAGGATTAGATATTGTCTATTTTG
GAGTCTAGAGAAAAAGCTACATTCACAGTGATCAGTGAAAAATACTATTG
TTCCTGGAAAACAAACCTTTTGTTGAAAAACCCAAATCTAGTAGTGAGAG
ACATGGAAGAAAACTGTACCCCCAGTCAGGCACATGCACATACCCTCCAA
TTAATGTGATCATTAACAAGATGTGAAACATTAACAAGAAAGTTTTAATG
ATAGTTTCAAAAGTGTCTAAAGTGTATTAGTTCTCTACATGCTACCCACC
ATATGATGAGGTTACAACTTAGAACTTTTTTATAGTAAAAATGGCACTCT
AATAAAAATAATTGTTAAATATCCTACGTATTTTTAAAAGAATGACACAT
TATTTGGGTTGGTGTTTCCTTTTCTTATCACATGGCTACCTGTGAATTGA
CCATTTTACTCCTACTCTGCATCAGGGAAGAAAACTAATGCTACACAATG
AGGTCTAGTAAAAGGCAAAATACATGTAATTAAAAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_b23.b1 MSMg01no545_b23.b1 CHROMAT_FILE:
MSMg01no545_b23.b1 PHD_FILE: MSMg01no545_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:01 2005
         (235 letters)



>mm_chr6_69312451_69313083
          Length = 633

 Score =  339 bits (175), Expect = 1e-97
 Identities = 214/227 (94%), Gaps = 2/227 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccatgacatccttccttacccaggaatcagaatagtaagatcagcagaagttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaattcccatgacatccttccttacccaggaatcagaatagtaagatcagcagaagttga 280

                                                                       
Query: 65  gagggagaacatcatggtctgtgatgttacctgacattgactgactcctagaaaggatgt 124
           || ||||| ||||||| | |||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 279 gaaggaga-catcatg-tgtgtgttgttacctgacattgacagactcatagaaaggatgt 222

                                                                       
Query: 125 gaccagtctattaagaagttcttttgtgaatgggtcacctcacttaggatggtatcctct 184
           |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| 
Sbjct: 221 gaccagactattaagaagtacttttgtgaatgggtcacctcactcaggatggtatcctcc 162

                                                          
Query: 185 agatgcatccatttgtctaagaacctcataaattcattgtttttaat 231
           ||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 161 agatgcatccattcgtctaagaacttcataaattcattgtttttaat 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 633
Length adjustment: 9
Effective length of query: 226
Effective length of database: 624
Effective search space:   141024
Effective search space used:   141024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)