BAC Information

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BAC

Clone NameMSMg01-545M21
Chromosome6 (Build37)
Map Location 19,131,658 - 19,132,270
singlet/doubletsinglet
Overlap genenone
Upstream geneCftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545M21.T7 (MSMg01no545_m21.b1)MSMg01-545M21.TJ (MSMg01no545_m21.g1)
ACCAG610779AG610780
length735738
length of high quality
(start - end)		698 (38 - 735)582 (66 - 647)
definitionCHROMAT_FILE: MSMg01no545_m21.b1 PHD_FILE: MSMg01no545_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:53 2005CHROMAT_FILE: MSMg01no545_m21.g1 PHD_FILE: MSMg01no545_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAA
GAATTTAAAACACAACTCATGGGACCTTCTCAAAAATTGATGATACACTT
AGACACAAAGAAAGTCTCAACAGATACCAGAAAATTGAAATAATTTCTTT
TCAGACCCAATAGATTAAAGCTGAATTTGAACAACAAAACAACAGAAAGC
CTATAAACTCATAGAAATAAAGAAAGAAACTAAAGATTTCTAGACTTCAA
TGTAAATGAGGACACAACATATCCAAACCTAGGGACACATTGAAAGCAGT
GCTAAGAGAAAACTTCACAGTACATAGTATCTTAATAAAGAAATTAGTAA
GAACTCATACTAACAACTTGCATAACACCTGAAAACACTAGAAGAAAAAG
AGGTAATCACACCCAAGAGGAAACTGTAGCAGAAAAGATCACACTCAGGA
CTGTAATCAATGAATTAGAAACAGAGAACAATACAAAGAATCAACAAGAC
CAAGAACTGGTCCTTTGAGGAAATCAACGGGTTAGACAAAACCTTAGCCA
ATCAAACTGAAAGGCAGCGAGAGAATATCCAAATTAACAAAATCAGAAAT
GAAAAGGGGTGATCATTTGGCTAAGGCCATCCACATTGAGTCCTGGTAAC
CTTTCACATCCCTGGTGGTTCTAGAGGTTCCCCTCACCCTCTGCAACTGC
ATATTTCCGTTCATTTTTCTGGGTCCCTGGGCTTC

GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCTCACTTTTTAATGGGGT
TATTTGATTTTCTGGCATCCTCTTCCCCTTCTTAACTACCAACTTTAAGT
TCTTTCTCAAACACTAGACAAAATCCCAGTACAAGGAAATCTCCCCAAGC
CTGGAAAAACTATATAATTTGACACCCCCAAAGAAACAAAATAAAACAAA
ACACTCCAAAGTGTATCCAAATAAAAGTACATGAAAAATTGTGGAGTCCA
TTTTTAGTCAACTACTCCTGAGTATGAGATGTGTCCTGGGGTAGTTGATA
TATCTAATGTCATTCTATTGTAGGACTCTACTTTTCTTCTCTCAGCAGAT
CTAAGTAACAGTTCAATTGTTTACCTTTACCCTAGTAGCTAGGCTTTCAT
TCATTAATTTATTGATTGATCAACTATTTAAAAATATAGCAAAATAAAAT
GCAGTATAATAAAACAAAACTATCACTTTGGAGTTATTTTATGAGAAGAG
TGTAACAACCTTACTTGCCTTAGATTTCTCATGTAATCAACTTCTACAAA
CTAAATTCATGTATAGCTATAATCTTAAACTATATACTTTTTTCTGCTGC
TGACAGAGAATAATACATATGTACCATATACTGAAATCAGCAAATACAGA
TGTATAAAGCAATTGAACATTTCATTTATAAGTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_m21.g1 MSMg01no545_m21.g1 CHROMAT_FILE:
MSMg01no545_m21.g1 PHD_FILE: MSMg01no545_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:53 2005
         (582 letters)



>mm_chr6_19131487_19132469
          Length = 983

 Score =  766 bits (396), Expect = 0.0
 Identities = 547/622 (87%), Gaps = 49/622 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgagcctcactttttaatggggttatttgattttct--ggcatcctct 58
           ||||||||||||||||||||| ||||||||||||||||||| ||||||  ||  ||||||
Sbjct: 172 tttgtttagctctgagcctca-tttttaatggggttatttgtttttctgagg--tcctct 228

                                                                       
Query: 59  tccccttcttaactaccaactttaagttctttctcaaacactagac-aaaatcccagtac 117
           || | ||| || |||||||||||||||||||| |||||||||| || ||||| |||||||
Sbjct: 229 tctctttcgtacctaccaactttaagttctttttcaaacactaaacaaaaat-ccagtac 287

                                                                       
Query: 118 aaggaaatctccccaagcctggaaaaactatataatttgacacccccaaagaaacaaaat 177
           | ||||||||||||||||| |||||||| |||||| |||||| |||||||||||||||||
Sbjct: 288 agggaaatctccccaagccaggaaaaacgatataaattgacatccccaaagaaacaaaat 347

                                                                       
Query: 178 aaaacaaaacactccaaagtgtatccaaataaaag-----tacat--------------- 217
           ||||||||||||||||||||||| |||||||||||     || ||               
Sbjct: 348 aaaacaaaacactccaaagtgtacccaaataaaagtataataaataaaaaataaaaataa 407

                                                                       
Query: 218 ----------gaaaaattgtggagtccatttttagtcaactactcctgagtatgagatgt 267
                      |||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct: 408 aataaaaataaaaaaattgtggaatccattcttagtcaactactcctgagtatgagttgt 467

                                                                       
Query: 268 gtcctggggtagttgatatatctaatgtcattctattgtaggactctacttttcttctct 327
           ||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 468 gtcatggggtagttgatatatctaatgtcactctattgtaggactctaattttcttctct 527

                                                                       
Query: 328 cagcagatctaagtaacagttcaattgtttacctttaccctagt-agctaggctttcatt 386
           |||||||| ||||||||||||||||| ||||||||| ||||||| | |||||||||||||
Sbjct: 528 cagcagatataagtaacagttcaattatttacctttcccctagtga-ctaggctttcatt 586

                                                                       
Query: 387 cattaatttattgattgatcaactattt-aaaaatatagcaaaataaaatgcagtataat 445
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 587 cattaatttattgattgatcaactattttaaaaatatagcaaaataaaatgcagtataat 646

                                                                       
Query: 446 aaaacaaaactatcactttggagttattttatg-----agaagagtgtaacaaccttact 500
           ||||||||||||||||||||||||| |||||||     |    |||||||||||||||||
Sbjct: 647 aaaacaaaactatcactttggagttcttttatgttctca----agtgtaacaaccttact 702

                                                                       
Query: 501 tgccttagatttctcatgtaatcaacttctacaaactaaattcatgtatagctataatct 560
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 703 tgccttagatttctcatgtaatcaacttctacaatctaaattcatgtatagctataatct 762

                                 
Query: 561 taaactatatacttttttctgc 582
           ||||||||||||||||||||||
Sbjct: 763 taaactatatacttttttctgc 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space:   556556
Effective search space used:   556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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