Query= MSMg01no546_a18.b1 MSMg01no546_a18.b1 CHROMAT_FILE:
MSMg01no546_a18.b1 PHD_FILE: MSMg01no546_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:12 2005
(712 letters)
>mm_chr6_139227995_139229109
Length = 1115
Score = 1265 bits (654), Expect = 0.0
Identities = 697/712 (97%), Gaps = 3/712 (0%)
Strand = Plus / Minus
Query: 4 ggaattc-ccaatcatgaacttagcataccctgctcctggatgcatggtgaaggggcagc 62
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ggaattcaccaatcatgaacttagcataccctgctcctggatgcatggtgaaggggcagc 856
Query: 63 aatggctctcagagcacaattgcagtgtccagtgatatgtgatgtgtaggagtttccatt 122
||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 855 aatggctctcagagcgctattgcagtgtccaatgatatgtgatgtgtaggagtttccatt 796
Query: 123 catgtgtgcatgggtatacatgtctatgtatggatgtaagtttgtgattgttgtcttgag 182
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 catgtgtgcgtgggtatacatgtctatgtatggatgtaagtttgtgattgttgtcttgag 736
Query: 183 tgttgatgtctatgcatgtgtacatatgtgtgcatgtgggcaagggatgtgtttgtgaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgttgatgtctatgcatgtgtacatatgtgtgcatgtgggcaagggatgtgtttgtgaaa 676
Query: 243 tgcgtgtatccaagcaattaaacaaatagttcacaaaatgttatcaagtgaatttaaatc 302
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 675 tgtgtgtatccaagcaattaaagaaatagttcacaaaatgttatcaagtgaatttaaatc 616
Query: 303 catgttgctgttagcatgttgtaaaacacatgccactggtccatgtttaggatcagcctc 362
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 615 catgttgctgttagcatgttgtaaaacacatgccactggtccatgtttaggagcagcctc 556
Query: 363 tttcttgcatgttatactcaaagcttcttctctagtgttttggtgagcctaggcaaagtc 422
| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 555 tctcttgcatgtaatactcaaagcttcttctctagtgttttggtgagcctatgcaaagtc 496
Query: 423 tgttgtcatgcttatcgtagtttgatattagagtgtgggtatttctctctcatggtgttc 482
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 495 tgttgtcatgcttatcgtagtttgatattagagtgtgggtatttccctctcatggtgttc 436
Query: 483 tttatgctgaacatagtcgaaaaag--aaaaaaaaagatgttgttcttttgtaagtaact 540
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 435 tttatgctgaacatagtcgaaaaagaaaaaaaaaaagatgttgttcttttgtaagtaact 376
Query: 541 tcaagacaggacacctcacagcattcaaatacaagcttttatccagttaatgatcaagca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tcaagacaggacacctcacagcattcaaatacaagcttttatccagttaatgatcaagca 316
Query: 601 ttaccgactttcatcaatgttcaggagcttaattcctggattacacatccccccaaaagc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttaccgactttcatcaatgttcaggagcttaattcctggattacacatccccccaaaagc 256
Query: 661 tacatatgaaaatcagaatcatagacccaaacaatagaactcttataccatg 712
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 taaatatgaaaatcagaatcatagacccaaacaatagaactcttataccatg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1115
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1105
Effective search space: 775710
Effective search space used: 775710
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_a18.g1 MSMg01no546_a18.g1 CHROMAT_FILE:
MSMg01no546_a18.g1 PHD_FILE: MSMg01no546_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:12 2005
(587 letters)
>mm_chr6_139069783_139070769
Length = 987
Score = 1067 bits (552), Expect = 0.0
Identities = 579/588 (98%), Gaps = 2/588 (0%)
Strand = Plus / Plus
Query: 1 tctgtcacagcacaatcatattttaaaactcaggaattagttcactctcctcttgatact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtcacagcacaatcatattttaaaactcaggaattagttcactctcctcttgatact 260
Query: 61 tattttgtgttagataatatgtctttatcctctgataatttctatgcattccttcactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttgtgttagataatatgtctttatcctctgataatttctatgcattccttcactct 320
Query: 121 catgacaacctcgtttatgccacacagcactgttttttctattgtgataacttctctcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgacaacctcgtttatgccacacagcactgttttttctattgtgataacttctctcaa 380
Query: 181 tctataaaaatttgaagagtggtttgttacatgatatgcacaagtagtaaccacaagcct 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tctataaaaatttgaagagtggtttgtcacatgatatgcacaagtagtaaccacaagcct 440
Query: 241 tgtgctttggagaaagagctcttactgtcattactaagttctaagtaaaagactgttaca 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tgtgctttggggaaagagctcttactgtcattactaagttctaagtaaaagactgctaca 500
Query: 301 gacacagaaacagagaaaagataatgtcacaacagaggcagggattggaatgatgagcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacacagaaacagagaaaagataatgtcacaacagaggcagggattggaatgatgagcca 560
Query: 361 aaagaggaaggatgtagaaacaggagatttctagacatcaggaccaactaattgtggtaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagaggaaggatgtagaaacaggagatttctagacatcaggaccaactaattgtggtaa 620
Query: 421 cattttgattagatacttttgtcttctcaagctatgataataataaactttagttgtttt 480
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 621 cattttgattagatacttttgttttctcaagctatgataataataaacttcagttgtttt 680
Query: 481 tgtacaaagttgtatagtttgctttaataagccagggacctactcaatg-aggaacctga 539
||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct: 681 tgtacaaagttgtatagtttgctttaataagccagggacctacacaatgtagga-cctga 739
Query: 540 ctgaatagatacatttctaaatacatgtaaatgtttcacattgtggta 587
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 740 ctgaatagatacatttctaaatacatgtaaatatttcacattgtggta 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
