Query= MSMg01no548_f10.b1 MSMg01no548_f10.b1 CHROMAT_FILE:
MSMg01no548_f10.b1 PHD_FILE: MSMg01no548_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:14 2005
(465 letters)
>mm_chr6_49111052_49111916
Length = 865
Score = 832 bits (430), Expect = 0.0
Identities = 450/460 (97%), Gaps = 6/460 (1%)
Strand = Plus / Plus
Query: 12 gaattcttaccaactcttcacccaaggtgaagcagagctgtggggcccacatggaagaag 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttaccaactcttcacccaaggtgaagcagagctgtggggcccacatggaagaag 265
Query: 72 aagaacaaatgctacaaggtgtcctccggcctctccaggtgcacacacctttgatcccag 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagaacaaatgctacaaggtgtcctccggcctctccaggtgcacacacctttgatcccag 325
Query: 132 cactatggaggcagagactgatggattgctgtgagttggaggccagcttgggctagagaa 191
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cactatggagactgagactgatggattgctgtgagttggaggccagcttgggctagagaa 385
Query: 192 tgaattccagcacagccagagctacacagagaaatcttgtttcaaacagacaaacacaca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgaattccagcacagccagagctacacagagaaatcttgtttcaaacagacaaacacaca 445
Query: 252 cacacacac------gtaatcttagtcaaaaagccaagaagtgatataataaatcagtga 305
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cacacacacacacacgtaatcttagtcaaaaagccaagaagtgatataataaatcagtga 505
Query: 306 ataaatgaataaataagtaaaataaaaactcaggtagaggtcagcactagaatacttgcc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ataaatgaataaataagtaaaataaaaactcaggtagaggtcagcactagaatacttgcc 565
Query: 366 tagcaagcagcagggcctgaggtgcatgcccagcactgagggggtaggtgagatgggctg 425
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 566 tagcaagcagcagggcctgaggtgcatacccagcactgagggggtaggtgagatgggctg 625
Query: 426 ccagtattcactcccaggcaaggtaaaacataatgtgata 465
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 626 ccagtattcactcccaggcaaggtaaagcataatgtgata 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_f10.g1 MSMg01no548_f10.g1 CHROMAT_FILE:
MSMg01no548_f10.g1 PHD_FILE: MSMg01no548_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:14 2005
(488 letters)
>mm_chr6_49235640_49236527
Length = 888
Score = 837 bits (433), Expect = 0.0
Identities = 472/485 (97%), Gaps = 1/485 (0%)
Strand = Plus / Minus
Query: 5 agatcctcctgcttctgccactaccacctgggtgctggggttacatggaacacctctacc 64
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 592 agatcctcctgcttctgccactaccacctgggtgctggggttaaatggaacacctctacc 533
Query: 65 ctgagcaagaatttgtaagattctagtaaactcagaagacaagtttattaagtctaaact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctgagcaagaatttgtaagattctagtaaactcagaagacaagtttattaagtctaaact 473
Query: 125 ctgctttttttttttttaaccaaatgttcaacaacaagcagctgaaacagatgtttgcaa 184
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctgcttttttttttattaaccaaatgttcaacaacaagcagctgaaacagatgtttgcaa 413
Query: 185 tgagcagatgttgctgtaaattttgtagacaagcgtgaaaattgtcactatttgtgattg 244
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgtgcagatgttgctgtaaattttgtagacaagcgtgaaaattgtcactatttgtgattg 353
Query: 245 ctaaaaggaaatcatgttcagaactcccagccaaagctatgtagacacattttcaaaaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctaaaaggaaatcatgttcagaactcccagccaaagctatgtagacacattttcaaaaat 293
Query: 305 ccaaacctgtaagggcaggacgtatgcaaacaagactgaatccagccgggcggtgcttta 364
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 292 ccaaatctgtaagggcaggacgtatgcaaacaagactgaatccagccaggcggtgcttta 233
Query: 365 atcccagcactcaggaggcagaggcaggtggatctctgagttcgagggcagcctggtcta 424
|||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 232 atcccagcactcgggaggcagaggcaggtggatctctgagttcaaggccagcctggtcta 173
Query: 425 caaagtgagttccaggacagccagggctatacagagaaaccctgtctcaaaaaa-caaaa 483
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 172 caaagtgagttccaggacagccagggctacacagagaaaccctgtcttgaaaaatcaaaa 113
Query: 484 caaaa 488
||||
Sbjct: 112 gaaaa 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
