Query= MSMg01no548_j02.b1 MSMg01no548_j02.b1 CHROMAT_FILE:
MSMg01no548_j02.b1 PHD_FILE: MSMg01no548_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:31 2005
(688 letters)
>mm_chr6_111864385_111865475
Length = 1091
Score = 1236 bits (639), Expect = 0.0
Identities = 675/687 (98%), Gaps = 3/687 (0%)
Strand = Plus / Plus
Query: 5 gaattccggggacttacctctcctctcagcaaggatctttttcctggaccacattagctc 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattccggggacttacctctcctctcagcaaggatctttttcctggaccgcattagctc 264
Query: 65 agtagagcagcagttgcctggcatgcgcaaggtccccagggtctcagcccccagcactga 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtggagcagcagttgcctggcatgcgcaaggtccccagggtctcagcccccagcactga 324
Query: 125 gaaaagaaatgactcttttggcgtgatttcctaggtttgttttggatttggcaggggatg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 gaaaagaaatgactcttttggcgtgatttcctaggtttgttttggatttggcagtggatg 384
Query: 185 gttatgtctgtaattatgccttcagcacttctcaaagtttaggatgaaaaaaaagacatt 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 gttatgtctgtaattatgccttcagcacttctcaaagtttaggacgaaaaaaaagacatt 444
Query: 245 caagaaatgtgtgattgaagacactgtaggcctttatatttggctgaatactgcagaggg 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 caagaaatgtgtgatttaagacactgtaggcctttatatttggctgaatactgtagaggg 504
Query: 305 ag-tgg-ggtctctagaggaaccagggcccatcatctgattacaagccaagcacaaggag 362
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agatgatggtctctagaggaaccagggcccatcatctgattacaagccaagcacaaggag 564
Query: 363 ggggccataaaaatggttaagaagtttctggttgggatatataacttgccactgccaggg 422
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 ggggccataaaaatggttaagaagtttctggttgggatacataacttgccactgccaggg 624
Query: 423 gcaagctgactagtgaggaggccattcctgtggttccatagggcagggaaaacaggaacc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcaagctgactagtgaggaggccattcctgtggttccatagggcagggaaaacaggaacc 684
Query: 483 tagagaaacatttttt-gttagttctagaaaccaagttactatacttaggggaattgtta 541
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagagaaacatttttttgttagttctagaaaccaagttactatacttaggggaattgtta 744
Query: 542 gtgtccaaacaaaatgaagatgctttacaaagtgatgtggcactagctaacagccccagc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgtccaaacaaaatgaagatgctttacaaagtgatgtggcactagctaacagccccagc 804
Query: 602 ttttatctctgttcatatcccacgtcacacagaaacaggagcagtcctgtaaaattacat 661
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttttatctctgttcatatctcacgtcacacagaaacaggagcagtcctgtaaaattacat 864
Query: 662 aaaaactcatgtcactcctttctaaga 688
|||||||||||||||||||||||||||
Sbjct: 865 aaaaactcatgtcactcctttctaaga 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1091
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1081
Effective search space: 732918
Effective search space used: 732918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_j02.g1 MSMg01no548_j02.g1 CHROMAT_FILE:
MSMg01no548_j02.g1 PHD_FILE: MSMg01no548_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:31 2005
(647 letters)
>mm_chr6_111902513_111903559
Length = 1047
Score = 818 bits (423), Expect = 0.0
Identities = 444/451 (98%), Gaps = 2/451 (0%)
Strand = Plus / Minus
Query: 197 ggatgaaggaagggagggagacaagacagagagagagggaagagggagggacagggagat 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 ggatgaaggaagggagggagacaagacagagagagagggaagagggagggacagggagat 988
Query: 257 tggaggngagggagagagacacagacactatgtgtgcatgaacacacacacacaaagaga 316
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 tggagg-gagggagagagacacagacactatgtgtgcatgaacacacacacacaaagaga 929
Query: 317 gagagagtgagagagagagagtgtgtgtgagagagagagagtgagagagagagagagaga 376
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 928 gagagagtgagagagagagtgtgtgtgagagagagagagagtgagagagagagagagaga 869
Query: 377 gagagagagagagaggagagaggattactgagtgtattgacaactatcctgtgttaaaat 436
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gagagagagagtga-gagagaggattactgagtgtattgacaactatcctgtgttaaaat 810
Query: 437 gtgtaaatgtgaatagtggatataaaagacctggttaggggccacaatagatgtcagaga 496
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gtgtaaatctgaatagtggatataaaagacctggttaggggccacaatagatgtcagaga 750
Query: 497 attcccctttatgggcttgttgtcgtgccttggttccatctttgtggaaactctcctgca 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 attcccctttatgggcttgttgtcgtgccttggttccatctttgtggaaactctcctgca 690
Query: 557 atttcccctttgtcaaaatctatggtactcttcagttgctttgcaggagtgttttgcacc 616
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 689 atttcccctttgtcaaaatctatggtactcttcagttgctttgcaggagggttttgcacc 630
Query: 617 ctcccttttatttctgtgtgatgaactgttg 647
|||||||||||||||||||||||||||||||
Sbjct: 629 ctcccttttatttctgtgtgatgaactgttg 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
