BAC Information

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BAC

Clone NameB6Ng01-001K01
ChromosomeY (Build37)7 (Build37)
Map Location 1,120,570 - 1,121,07372,013,736 - 72,014,302
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001K01.bB6Ng01-001K01.g
ACCDH839893DH839894
length990640
definitionDH839893|Mus musculus domesticus DNA, BAC clone: B6Ng01-001K01, 5' end.DH839894|Mus musculus domesticus DNA, BAC clone: B6Ng01-001K01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,570 - 1,121,073)(72,013,736 - 72,014,302)
sequence
gaattcatcgtctctcccgattttttttttttttaacttccattacattt
tattttattttaattaggtattttcctcgtttacattttcaatgctatcc
caaaggtcccccatacacacacccccactcccctacccacccacttcccc
tttttggccctggcgttcccctgtactggggcatataaagtttgcaagtc
cagtgggcctctctttgcagtgatggctgactaggccgtcttttgataca
tatgcagctagagtcaagagctccagggtactggttagttcatattgttg
ttccacctatagggttgcagttcccattagctccttgggtaatttctcta
gctcctccattgggggccgtgtgacccatccaatagctgaccgtgatcat
ccacttctgtgtttgctaggccccagcatagtctcacaagagacagctat
atctgggtcctttcagcaaaatcttgctagtgtatgcaatggtgtcagca
tttggaacctgattatgggatggatccctgcatatggcaatcactagatg
gtccatcctttcgtcacagctccaaattttgtctctgtaactccttccat
gggtgttttgttcccatttctaagaaagggtaaagtgtccacactttggt
cttcgttcttcttgaatttcatgtgtttggcaagttgtatcttatatctt
gggtatcctaagtttctaggctaatatccacttatcagtgagtacatatt
gtatgagttcctttgtgattgggttaccttactcaggatgatgccctcca
ggtccatccatttgcctaggaatttcataagttcatttttttaatagctg
agtagtattccattgtgtaaatgtaccacattttctgtatccattcctct
gttgaggggcatctgggttctttccagcttctggctatataaataaggct
gctatgaacatagtggagcatgtgtccttcttaccggttg
gaattcatgcttggtactaagactcacctgtggctggggaggtcatgaac
cctagagaagaacctactcctgccacttccttaagccactgtaattccta
actcctctttcaacacttatccttaaagccacagacaagcgcagccctcc
cccgcatcaaagcagctccttcctgcagtggatggagactatcaccaaag
tcttcaccggctcagagagcagagaacagctaaccactgggtgctcaaca
caaccaccacacccaaggctcggaagtggcatagaagacggggcaggaag
gttataagaaccagagaaccgggatgtctgctgtgagattgtgtccttta
cagatgacagagaagctgaacctacataatcttaacagtatgactaccta
aacaagatctaaaaagtgacaataccagttgatacaccagtgcggatggg
ggaatctcttaaggccttgcccctagatgaagaaccactggctattaaac
gatggctgagagggagaattagtcttcttcagggatgagtccctacttga
ttgtctatcccaactggtcagtctaatgttctcagcagttaggattttga
aggggggaggggcataggaagagttgaagtggggagggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120570_1121073
seq2: B6Ng01-001K01.b_62_571

seq1  TTTTTTTTTTTTTTAATTT--------TTTTTTCCATTTTTTATTAGGTA  42
      |||||||||||||||| ||        |||| |    |||| ||||||||
seq2  TTTTTTTTTTTTTTAACTTCCATTACATTTTATTTTATTTTAATTAGGTA  50

seq1  TTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCAC  92
      |||  ||| ||||||||| ||||||||| ||||| ||||||||||  |||
seq2  TTTTCCTCGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATA--CAC  98

seq1  CCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTC  142
       ||||||||||||||| |||||||||| |||||||||||||||||  |||
seq2  ACACCCCCACTCCCCTACCCACCCACTTCCCCTTTTTGGCCCTGGCGTTC  148

seq1  CCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCC  192
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  CCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAGTGGGCCTCTCTTTGC  198

seq1  AGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAG  242
      ||||||||| ||||||||| |||||||||| |||||||||||||||||||
seq2  AGTGATGGCTGACTAGGCCGTCTTTTGATACATATGCAGCTAGAGTCAAG  248

seq1  AGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGG  292
      |||||| ||||||||||||| |||||  ||||||||||||||||||||| 
seq2  AGCTCCAGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGC  298

seq1  AGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCC  342
      || |||| |||||||||||| || |||||||||||||||||||||| |||
seq2  AGTTCCCATTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTGGGGGCC  348

seq1  CTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTG  392
       | ||| ||||||| |||||||| |||| |||||||||||||||||||| 
seq2  GTGTGACCCATCCAATAGCTGACCGTGATCATCCACTTCTGTGTTTGCTA  398

seq1  GGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCCTCCTTTCAATA  442
      |||||| |||||||||||||||||||||||| |||||  ||||||||  |
seq2  GGCCCCAGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCA  448

seq1  AAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGG  492
      ||||||||||||||||||||||||||||||| ||||||  ||||||||||
seq2  AAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGAACCTGATTATGG  498

seq1  GGTGGATCCCTG  504
      | ||||||||||
seq2  GATGGATCCCTG  510

seq1: chr7_72013736_72014302
seq2: B6Ng01-001K01.g_139_705

seq1  CACTTCCTTAAGCCACTGTAATTCCTAACTCCTCTTTCAACACTTATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTAAGCCACTGTAATTCCTAACTCCTCTTTCAACACTTATCCT  50

seq1  TAAAGCCACAGACAAGCGCAGCCCTCCCCCGCATCAAAGCAGCTCCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCACAGACAAGCGCAGCCCTCCCCCGCATCAAAGCAGCTCCTTCC  100

seq1  TGCAGTGGATGGAGACTATCACCAAAGTCTTCACCGGCTCAGAGAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGATGGAGACTATCACCAAAGTCTTCACCGGCTCAGAGAGCAGA  150

seq1  GAACAGCTAACCACTGGGTGCTCAACACAACCACCACACCCAAGGCTCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCTAACCACTGGGTGCTCAACACAACCACCACACCCAAGGCTCGG  200

seq1  AAGTGGCATAGAAGACGGGGCAGGAAGGTTATAAGAACCAGAGAACCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCATAGAAGACGGGGCAGGAAGGTTATAAGAACCAGAGAACCGGG  250

seq1  ATGTCTGCTGTGAGATTGTGTCCTTTACAGATGACAGAGAAGCTGAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCTGTGAGATTGTGTCCTTTACAGATGACAGAGAAGCTGAACCT  300

seq1  ACATAATCTTAACAGTATGACTACCTAAACAAGATCTAAAAAGTGACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATCTTAACAGTATGACTACCTAAACAAGATCTAAAAAGTGACAAT  350

seq1  ACCAGTTGATACACCAGTGCGGATGGGGGAATCTCTTAAGGCCTTGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTGATACACCAGTGCGGATGGGGGAATCTCTTAAGGCCTTGCCCC  400

seq1  TAGATGAAGAACCACTGGCTATTAAACGATGGCTGAGAGGGAGAATTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAAGAACCACTGGCTATTAAACGATGGCTGAGAGGGAGAATTAGT  450

seq1  CTTCTTCAGGGATGAGTCCCTACTTGATTGTCTATCCCAACTGGTCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAGGGATGAGTCCCTACTTGATTGTCTATCCCAACTGGTCAGTC  500

seq1  TAATGTTCTCAGCAGTTAGGATTTTGAAGGGGGGAGGGGCATAGGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTCTCAGCAGTTAGGATTTTGAAGGGGGGAGGGGCATAGGAAGAG  550

seq1  TTGAAGTGGGGAGGGTG  567
      |||||||||||||||||
seq2  TTGAAGTGGGGAGGGTG  567