BAC Information

Click to search

BAC

Clone NameB6Ng01-002I24
Chromosome7 (Build37)3 (Build37)
Map Location 4,095,740 - 4,096,67441,059,448 - 41,059,737
singlet/doubletsingletsinglet
Overlap geneLeng8
Upstream geneLOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1
Downstream geneLeng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002I24.bB6Ng01-002I24.g
ACCDH840548DH840549
length942292
definitionDH840548|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I24, 5' end.DH840549|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,095,740 - 4,096,674)(41,059,448 - 41,059,737)
sequence
gaattcttcatggtcaccctgagggtccggtatggaaagagggtgtgagg
cgggagcaagtagagtgatttcaataaaggagtgggaggaaaccaccgag
cttcctaccttctccaaggcaatgcgggcatgggtctcatacacctccac
agtgaactccgtccggatgccttgcacctgggcagtaaaaaacaacaaag
tcggggagaggatagcatgaaaaggcctgacatcaacaccctctcggcgc
tgcattactgtcaggtcctgcctaatggacttcctctgctcacaggcaaa
ggcatagtcctgcttctccttccagtgggacttgaccatgcacagagact
tcttcaaaaccttcagggaagagaatcaaagctgagtggccagacagctg
acaggcttaagccactgtgccccactccacctgagcatcaccaaagtcag
tatcagtgactcaccactatgaacaaacaaaatcaaaccaacacacctgt
cgtgtgagtgctccaagtctccctggctctacggccccacacataaatct
cccttaactttgctggtcataagggagattgatgaccaggctatgcccta
catgtgaagggcctgcatgctaggatttttctcgtccagagctaccactt
cctccacccaacatgtttcatgtgcacgatcttatgttatgctcaacaca
ttctgggggcatacacacaatgcctgggacttacatgtacaaatcccaca
gaaatacaggtctggtgcgcaagtgagccgcacataatgcttttccaatg
tcaggacaggtgcccacaatctgcagtttcctgcaaagtcacggtccact
tgactgatctctgagttactcattctttctcaccaaagggttcccgtgtc
aggtgacgtgagtgcccatgttggaagcgggctgcctctctt
gaattctttgtttacctctgagccccattttttaatgtgattatttgatt
ttctggagtccaccttcttgagttctttatatatgttggatattattccc
ctatctgatttatgataggtaaaggtcctttcccaatctgttgttggtct
ttttgtcttattgacggtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttgtctattcttgatcttagagaacaagacattgctgtt
ctattcaggaattttccccctgtgcccatatcttcaaggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4095740_4096674
seq2: B6Ng01-002I24.b_43_984 (reverse)

seq1  AAGAG-GGCAGCCCGCTTCCAACATGGGCACTCACGTCGCCTGCGCCTTG  49
      ||||| |||||||||||||||||||||||||||||||| ||||   |  |
seq2  AAGAGAGGCAGCCCGCTTCCAACATGGGCACTCACGTCACCTGACACGGG  50

seq1  AA-CCTTTGGTGCTACAG-ATGAGTAACCTGGAGAGCAGTGGAGCTGACC  97
      || |||||||||  | || |||||||||   |||| ||||  ||  ||||
seq2  AACCCTTTGGTGAGAAAGAATGAGTAACTCAGAGATCAGTCAAGTGGACC  100

seq1  CTGAC-TGGCAGG-AGCTGCAGATTGTGGGCACCTGTCCTGACATT-ACA  144
       |||| | ||||| | ||||||||||||||||||||||||||||||   |
seq2  GTGACTTTGCAGGAAACTGCAGATTGTGGGCACCTGTCCTGACATTGGAA  150

seq1  AAGCACTATCTGCGGCTCACCTGCGCCCCAGACCCGT-CAACTGTGCGAC  193
      ||||| ||| |||||||||| ||||| ||||||| ||    ||||| || 
seq2  AAGCATTATGTGCGGCTCACTTGCGCACCAGACCTGTATTTCTGTGGGAT  200

seq1  CTGTGGCTGTAAGTCCCAGGCATTGTGTGTCTGCCCCCAGAATGTGTTGG  243
       |||   ||||||||||||||||||||||| |||||||||||||||||| 
seq2  TTGTACATGTAAGTCCCAGGCATTGTGTGTATGCCCCCAGAATGTGTTGA  250

seq1  GCATAACATAAGATCGGGCACATGGAACATGTTGGGTGAAGGAAGTGGTA  293
      |||||||||||||||| ||||||| ||||||||||||| |||||||||||
seq2  GCATAACATAAGATCGTGCACATGAAACATGTTGGGTGGAGGAAGTGGTA  300

seq1  GCTCTGGCTGAGAAAAATCCTAGCATGCAGGCCCTTCACATCTGGGGCAT  343
      |||||||  |||||||||||||||||||||||||||||||| | ||||||
seq2  GCTCTGGACGAGAAAAATCCTAGCATGCAGGCCCTTCACATGTAGGGCAT  350

seq1  AGCCTGGTCA-CAATCTCCCTTATGACCAGCAAAGTTAAGGGAGACTTAT  392
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  AGCCTGGTCATCAATCTCCCTTATGACCAGCAAAGTTAAGGGAGATTTAT  400

seq1  GTGTGGGGCCCTAGAGCCAGGGAGACTTGGAGCACTCACACCTGCTGTGT  442
      |||||||||| ||||||||||||||||||||||||||||||     ||||
seq2  GTGTGGGGCCGTAGAGCCAGGGAGACTTGGAGCACTCACACGACAGGTGT  450

seq1  GTTGGTTTGATTTTGTTTGTTCATAGTGGTGAGTCACTGATACTGGCTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTGGTTTGATTTTGTTTGTTCATAGTGGTGAGTCACTGATACTGACTTT  500

seq1  GGTGCTGCTCTGGTTGAGTGGGGCACAGTGGCTTTGGCCTGTCAGCTGTC  542
      |||| ||||| ||| |||||||||||||||||||  ||||||||||||||
seq2  GGTGATGCTCAGGTGGAGTGGGGCACAGTGGCTTAAGCCTGTCAGCTGTC  550

seq1  TGGCCACTCAGCTTTGATTCTCTTCCCTGAAGGTTTTGAAGAAGTCTCTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTCAGCTTTGATTCTCTTCCCTGAAGGTTTTGAAGAAGTCTCTG  600

seq1  TGCATGGTCAAGTCCCACTGGAAGGAGAAGCAGGACTATGCCTTTGCCTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGTCAAGTCCCACTGGAAGGAGAAGCAGGACTATGCCTTTGCCTG  650

seq1  TGAGCAGATGAAGTCCATTCGGCAGGACCTGACAGTAAGGCAGCGCTGAG  692
      |||||||| |||||||||| |||||||||||||||||| ||||||| |||
seq2  TGAGCAGAGGAAGTCCATTAGGCAGGACCTGACAGTAATGCAGCGCCGAG  700

seq1  AGGGTGCTGATGTCAGGCCTCTTCCTGCTCTCCTCTCCCTGACTCTGCTC  742
      |||||| ||||||||||||| ||| |||| ||||||||| |||| || | 
seq2  AGGGTGTTGATGTCAGGCCTTTTCATGCTATCCTCTCCCCGACTTTGTTG  750

seq1  TTTTCTACTGCCCAGGTGCAAGGCATCCGGACGGAGTTCACTGTGGAGGT  792
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACTGCCCAGGTGCAAGGCATCCGGACGGAGTTCACTGTGGAGGT  800

seq1  GTATGAGACCCATGCCCGCATTGCCTTGGAGAAGGTAGGAAGCTTGGTGG  842
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTATGAGACCCATGCCCGCATTGCCTTGGAGAAGGTAGGAAGCTCGGTGG  850

seq1  TTTCCTCCCACTCCTTTCTTGAAATCACTTGTACTTGCCTGTGCCTCACA  892
      ||||||||||||||||| |||||||||| | |||||||    ||||||||
seq2  TTTCCTCCCACTCCTTTATTGAAATCAC-TCTACTTGCTCCCGCCTCACA  899

seq1  CCCTCCTTCCATGCCTTACCCTCAGGGTGACCATGAAGAATTC  935
      ||||| |||||| ||  ||||||||||||||||||||||||||
seq2  CCCTCTTTCCATACCGGACCCTCAGGGTGACCATGAAGAATTC  942

seq1: chr3_41059448_41059737
seq2: B6Ng01-002I24.g_69_359 (reverse)

seq1  AAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAA  50
      ||||||||||||||||| |||||||| |||||||||| ||||||||||||
seq2  AAGCCTTGAAGATATGGGCACAGGGGGAAAATTCCTGAATAGAACAGCAA  50

seq1  TGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTG  100
      || ||||| || ||||||  ||||||||||||||||||||||| ||| ||
seq2  TGTCTTGTTCTCTAAGATCAAGAATAGACAAATGGGACCTCATAAAATTG  100

seq1  CAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG-GCACC  149
      ||||||||||| ||||||||||||||||||||||||||||||||  || |
seq2  CAAAGCTTCTGTAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAAC  150

seq1  AACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAA  199
      ||||||||||||||||| ||||||||||| |||||||||||||||| |||
seq2  AACAGATTGGGAAAGGACCTTTACCTATCATAAATCAGATAGGGGAATAA  200

seq1  TATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAAT  249
      ||||||| |||||| ||||||||||||||||||| |||||||||||||||
seq2  TATCCAACATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAAT  250

seq1  AACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  290
      || | |||||||||||||||||||||| |||||||||||||
seq2  AATCACATTAAAAAATGGGGCTCAGAGGTAAACAAAGAATT  291