BAC Information

Click to search

BAC

Clone NameB6Ng01-005C09
Chromosome7 (Build37)
Map Location 67,353,281 - 67,353,962
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf, EG664849
Downstream geneLOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005C09.bB6Ng01-005C09.g
ACCDH842365DH842366
length1,2251,170
definitionDH842365|Mus musculus domesticus DNA, BAC clone: B6Ng01-005C09, 5' end.DH842366|Mus musculus domesticus DNA, BAC clone: B6Ng01-005C09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaccagagaactcttaagcctgataaacagcttcagtgaagtag
ctggatataaaattaactcaaacaagtcaatggcctttctctacacaaag
gacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagc
cacaaataatataaaatacctaggcaacactctaactaaggaagtgaaag
atctgtatgacaagaacttcatgtctctgaagaaagaaattaaagaagat
ctcagaagatggaaagatctcccatgctcatggatcggcaggaccaatat
agtaaaaatgggtatcttgccaaaagcaatctacagattcaatgcaatcc
ccatcaaaattccaactcaattgttcaatgaattagaaagggcaatcggc
agattcatctggaataacaaaaaacctaggatagcaaaaactcttcttca
ggataaaagaacctctggtggaatcaccatgccggacctaaagctgtact
acagagcaattgtgataaaaactgcatggtactggtatagcgacagacaa
gtagaccaatggaacagaattgaagacccagagatgaacccacacaccta
tggtcacttgatctttgacaagggagctaaaaccatccagtggaaaaacg
actgcattttcaacaaatggtgctggcacaactggctgttatcatgtaga
agattgcgaattgatccattactatctccttgtactaaggtcaaatctaa
gtggattaaggatctccacataaaaccagagacactgaaacttatagagg
agaaagtggggaaaagccttgaagatatgggtacaggggaaaaattcctg
aataaacagcaatggcttgtgctgtaagatcgagaatcgataaatgggac
ctcataaattgcaaagcttctgcaaggcaaagacaccgtcaataagacaa
atgaccaccacagattgggaaaggatctttattatcccaaatcggacagg
gataatatccatatataaaagactcagaaggtagactcataaatcaatat
ccccataaaatggggctcagactgaccaagattctcaccgaggatactga
atggcgagaagcacctggaaatgttcatctccttatctcgcatgcatcaa
ccactctggaatccacctcacagtcgatggcctaatgaaattcaggggac
gttaatctcgtgtgtgatgatgtga
gaattcatgaatgatactgcaaacgctggcatcaaacatgccaaaggaat
ttgtaggtcttagcagaaaacatactaattttatttttctaactggtcat
tttctcaaacttccatttaaacatttttgtttatttccatagttacatgc
tggtgattctttgagtagattagactcttattagagttggtgttgattag
cacaaaggtgaataactacttaaaatactgagaatgaggaactgtcatta
ttcagccatagttgggacatctaaaactacctgtactggggtcaaacaat
attcaggaaaaagttgtggaaactaaatgaaagctagaggattggagaag
tactcagaaatgttttctctataaatgatataactgtttaaacatgacct
ccaaaaattatggttaaatgtatattcccctaagaatatctagagcaaat
tcaagaaagaaggatgaaggtgctctaaatattccaaccctacctgcaga
catttctatagtaatgaatactactaagatagcaagtgtccagtttcctt
agaaatgtggtcactgataatgttaaagagagtatatttcagcataataa
gacaatgaaaatcaaactcagagctagcatcctaataaatgattagaaac
tcaaagcactttcattaaaatcaggaacaagacaaggaagctcacacttc
ctgtcttattcagaacagtattaggagtcttaggtaagcaacaagagtga
aagatgtaaaggcgataggagtaggaaaagccgaagtcaattaattaaaa
tttaaatatgatatgattctataagtaaaaaattgtgctaaatatgccac
cagaaactgcataatgctaataatcacattcagcaaaattccaggataaa
aaacctgaaaatcatgttatgtaaaaatagtttgagaaaaaaatcataga
caaagtattatttacattatataaatatatataaattatgttatacataa
cattgttaacatggtatttgtaatatacataatatcccattatgttattt
attattactgtgtataaatatatgtatacacaaattgcatactaccatcc
taaattaaacacacttaccacatacaaacaatatgaatcctggtccaaga
catactcttccgtacctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_67353281_67353962
seq2: B6Ng01-005C09.g_567_1237

seq1  ACATTTCTATAGTAATGAATACTACTAAGATAGCAAGTGTCCAGTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTATAGTAATGAATACTACTAAGATAGCAAGTGTCCAGTTTCCT  50

seq1  TAGAAATGTGGTCACTGATAATGTTAAAGAGAGTATATTTCAGCATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTGGTCACTGATAATGTTAAAGAGAGTATATTTCAGCATAATA  100

seq1  AGACAATGAAAATCAAACTCAGAGCTAGCATCCTAATAAATGATTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGAAAATCAAACTCAGAGCTAGCATCCTAATAAATGATTAGAAA  150

seq1  CTCAAAGCACTTTCATTAAAATCAGGAACAAGACAAGGAAGCTCACACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCACTTTCATTAAAATCAGGAACAAGACAAGGAAGCTCACACTT  200

seq1  CCTGTCTTATTCAGAACAGTATTAGGAGTCTTAGGTAAGCAACAAGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTATTCAGAACAGTATTAGGAGTCTTAGGTAAGCAACAAGAGTG  250

seq1  AAAGATGTAAAGGCGATAGGAGTAGGAAAAGCCGAAGTCAATTAATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTAAAGGCGATAGGAGTAGGAAAAGCCGAAGTCAATTAATTAAA  300

seq1  ATTTAAATATGATATGATTCTATAAGTAAAAAATTGTGCTAAATATGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATATGATATGATTCTATAAGTAAAAAATTGTGCTAAATATGCCA  350

seq1  CCAGAAACTGCATAATGCTAATAATCACATTCAGCAAAATTCCAGGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACTGCATAATGCTAATAATCACATTCAGCAAAATTCCAGGATAA  400

seq1  AAAACCTGAAAAATCATGTTTATGTAATAAATAGTTTGAGAAAAAAAATC  450
      |||||||| ||||||||| |||||||| |||||||||||| |||||||||
seq2  AAAACCTG-AAAATCATG-TTATGTAA-AAATAGTTTGAG-AAAAAAATC  446

seq1  ATAGACAAAGTATTATTTACATTATATAAATATATATAAATTATGTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAAAGTATTATTTACATTATATAAATATATATAAATTATGTTATA  496

seq1  CATAACATTGTTACATTGTTATTTGTAATATACATAATATTCACATTATG  550
      |||||||||||||   || |||||||||||||||||||| || |||||||
seq2  CATAACATTGTTAACATGGTATTTGTAATATACATAATA-TCCCATTATG  545

seq1  TATATTATTATTTATGTATATATAAATTATATGTATACATAAATTGCATA  600
      |   ||||||||  ||| |||   || |||||||||||| ||||||||||
seq2  TTATTTATTATTACTGTGTAT---AAATATATGTATACACAAATTGCATA  592

seq1  CATACATACATAAATTATACACACATACACACATACAAACAAATATGATA  650
      | |||   | ||||||| |||||| ||| ||||||||||| |||||||  
seq2  C-TACCATCCTAAATTAAACACACTTAC-CACATACAAAC-AATATGAAT  639

seq1  CCTG--CCAAAGGACATACCTCTT-CGTACCTCTC  682
      ||||  ||||  |||||| ||||| ||||||||||
seq2  CCTGGTCCAA--GACATA-CTCTTCCGTACCTCTC  671