BAC Information

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BAC

Clone NameB6Ng01-005M14
Chromosome7 (Build37)
Map Location 64,253,111 - 64,346,751
singlet/doubletdoublet
Overlap geneGabrg3
Upstream geneNipa1, LOC672959, Herc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005M14.bB6Ng01-005M14.g
ACCDH842828DH842829
length1,1141,087
definitionDH842828|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M14, 5' end.DH842829|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,253,111 - 64,254,239)(64,345,662 - 64,346,751)
sequence
gaattctgtgtggcatattcatgaactattcaagaggcagaggctgaaga
ggaggaagctaatccaaacttcacactagtttcctggagcagagagccca
gtgttctcttgtggtaagggctgctctccattctgaagttttgccagcta
agagggtgtagggctgagcagtgcacatgttttattgtgtctacatttga
ctaagtgttggtgcaacactcccacccacagagaaatgtttttctttctc
tcataaactttctttttaatggcattaatcatccctcttttcctcagagg
aaaaagcactcttgtaatttctttctaaaaataaacaggattttacacaa
ttcataattggcaatgaaggtatcatgtgggaaattctactaaatttaac
aggtgagattgctcagaaccctccctgtgtaaacacctctgtgttggtgg
aggttctgagcttatctttgtgttagtaattaaagggcttaatgatgcca
aaataaactgggagtcctacaccatgtggagcattttgacaaaacagaag
aaaaatcatgctccttaataatatccatctgtaactcctgaaagattcat
aaatcacttcctcccagatttttcccttctctgagaaaaagagagacctg
tggttgctaggcatactcactaatctggacttccagcaaagtctctctcc
cactgcagttgcctcccattggcactgtgcttagcacagtaaggtaaata
cctgggcaaaagaagctgctggggccagagtaaaactcatgaatcagccc
agcccagcagcaccgtctcagcaaaagcggtggatgaaggaaaggagaca
agaataggagaaagagaagtgaggaaggcataatagaagagagataaaag
ccgctgtcaaattttcttcataaagttgtaggggactatatccaatatat
acaaagagctcagaagctgaccccagaaatcaaataccacattaaaaatg
gggctcagagctaaacaaagaattctcttctgaggaataccgaatgctaa
aagcaccttgaaaaatgttcagcatctcatcatcaggaatgcaattcaaa
caccctggagattc
ctcaatcaaccatttctagcatatctgccattccagtgtttgccccacat
tggaagctttgtgtttcaaagtttcagttgcctgtgacttactgtgattt
ccaaataaggagtggaaataatgatctggaaggtttactttccagaacag
ctaatgcacctgaaagggcttctgtgctgttttgtggcagttgatctgtc
agattgacattaactgtgaattttctgttgaatctcaggtggatgtgtac
tgactggtttgaactgagtgtgaatgggacgacactacagagggtcagaa
ctactagcttctctgcatgtagatctctacacttaacactctgactttca
accaggcagctggcttctatggagaccttggcatagctctgtactctgcc
atcactgtaaagcactggacaaagtgttagcttcgtctgtacactgaaca
tgctgagaggacatgtttgtgacatttcaagttctcaggacagaagtgct
taatttccctctccccctttctactctgtctttttccattggttttggag
gtagggaatgaacccaaggccaagaccgtattccattagggagcttcatg
tctgtctaatttatcttagaacctgaaatggcttaggaaatacaatttta
gttgtcattctggtaggcatgagatgttccttgggaagcagaggcacctg
ggcctttaatctccatcattcactgtcccataccgttttccccaggtgac
ccattgggtagctccaggcatcctaagcacacacctgggatgggaggaaa
ataactttttaacacattgaaattattgcatgggctctgatgaagagacc
aatatgatttgttttcaaaagtcttttgaagtttagcagcttcccatgtt
gagcagagctgacatcattccaggtcacttgtctggggctttgtcctcat
tgtaattgtgaaggagctggaacctcattctcacagagtgagcatggtgg
gccctccagacctttgtgaatgcttgtcctccctcagcttctctcggcag
gcttcccaattggaaagccctttctgggaaagctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_64253111_64254239
seq2: B6Ng01-005M14.b_47_1160

seq1  GAATTCTGTGTGGCATATTCATGAACTATTCATGAGGCAGAGGCTGAAGA  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCTGTGTGGCATATTCATGAACTATTCAAGAGGCAGAGGCTGAAGA  50

seq1  GGAGGAAGCTAATCCAAACTTCACACTAGTTTCCTGGAGCAGAGAGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGCTAATCCAAACTTCACACTAGTTTCCTGGAGCAGAGAGCCCA  100

seq1  GTGTTCTCTTGTGGTAAGGGCTGCTCTCCATTCTGAAGTTTTGCCAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCTTGTGGTAAGGGCTGCTCTCCATTCTGAAGTTTTGCCAGCTA  150

seq1  AGAGGGTGTAGGGCTGAGCAGTGCACATGTTTTATTGTGTCTACATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGTAGGGCTGAGCAGTGCACATGTTTTATTGTGTCTACATTTGA  200

seq1  CTAAGTGTTGGTGCAACACTCCCACCCACAGAGAAATGTTTTTCTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTTGGTGCAACACTCCCACCCACAGAGAAATGTTTTTCTTTCTC  250

seq1  TCATAAACTTTCTTTTTAATGGCATTAATCATCCCTCTTTTCCTCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACTTTCTTTTTAATGGCATTAATCATCCCTCTTTTCCTCAGAGG  300

seq1  AAAAAGCACTCTTGTAATTTCTTTCTAAAAATAAACAGGATTTTACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCACTCTTGTAATTTCTTTCTAAAAATAAACAGGATTTTACACAA  350

seq1  TTCATAATTGGCAATGAAGGTATCATGTGGGAAATTCTACTAAATTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATTGGCAATGAAGGTATCATGTGGGAAATTCTACTAAATTTAAC  400

seq1  AGGTGAGATTGCTCAGAACCCTCCCTGTGTAAACACCTCTGTGTTGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGATTGCTCAGAACCCTCCCTGTGTAAACACCTCTGTGTTGGTGG  450

seq1  AGGTTCTGAGCTTATCTTTGTGTTAGTAATTAAAGGGCTTAATGATGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGAGCTTATCTTTGTGTTAGTAATTAAAGGGCTTAATGATGCCA  500

seq1  AAATAAACTGGGAGTCCTACACCATGTGGAGCATTTTGACAAAACAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACTGGGAGTCCTACACCATGTGGAGCATTTTGACAAAACAGAAG  550

seq1  AAAAATCATGCTCCTTAATAATATCCATCTGTAACTCCTGAAAGATTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCATGCTCCTTAATAATATCCATCTGTAACTCCTGAAAGATTCAT  600

seq1  AAATCACTTCCTCCCAGATTTTTCCCTTCTCTGAGAAAAAGAGAGACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTTCCTCCCAGATTTTTCCCTTCTCTGAGAAAAAGAGAGACCTG  650

seq1  TGGTTGCTAGGCATACTCACTAATCTGGACTTCCAGCAAAGTCTCTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTAGGCATACTCACTAATCTGGACTTCCAGCAAAGTCTCTCTCC  700

seq1  CACTGCAGTTGCCTCCCATTGGCACTGTGCTTAGCACAGTAAGGTAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGTTGCCTCCCATTGGCACTGTGCTTAGCACAGTAAGGTAAATA  750

seq1  CCTGGGCAAAAGAAGCTGCTGGGGCCAGAGTAAAACTCAGGAATCAGCCC  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTGGGCAAAAGAAGCTGCTGGGGCCAGAGTAAAACTCATGAATCAGCCC  800

seq1  AGCCCAGCAGCACCGTCTCAGCAAAAGCGGTGGATGAAGGAAAGGAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCCCAGCAGCACCGTCTCAGCAAAAGCGGTGGATGAAGGAAAGG-AGAC  849

seq1  AAGAATAGGAGAAAGAGAAGTGAGGAAGGCATAATAGAAGAGAGATTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGAATAGGAGAAAGAGAAGTGAGGAAGGCATAATAGAAGAGAGA-TAAA  898

seq1  AGCCGCTGTCAAATTTTCTTCATAAAGTTGTAGGGGACTAATATCCAATA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCCGCTGTCAAATTTTCTTCATAAAGTTGTAGGGGACT-ATATCCAATA  947

seq1  TATACAAAGAGCTCAAGAAGCTGGACCCCAGAAAATCAAATAACCACATT  1000
      |||||||||||||| ||||||| |||||||| ||||||||| ||||||||
seq2  TATACAAAGAGCTC-AGAAGCT-GACCCCAG-AAATCAAAT-ACCACATT  993

seq1  AAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCATCTGAGGAATACCG  1050
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -AAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCTTCTGAGGAATACCG  1042

seq1  AATGGCTAAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGG  1100
      ||| ||||| ||||||||  ||||||||||||||||  | ||||||||| 
seq2  AAT-GCTAA-AAGCACCTTGAAAAATGTTCAGCATC--TCATCATCAGG-  1087

seq1  AAATGCAAATCAAAACAACCCTGAGATTC  1129
       ||||||| || ||||| ||  |||||||
seq2  -AATGCAATTC-AAACACCCTGGAGATTC  1114

seq1: chr7_64345662_64346751
seq2: B6Ng01-005M14.g_78_1164 (reverse)

seq1  TGCAGCTTTTCCAGAAAGGGCTGTCAAATGGGAAAGCATGGCAGAAGAAA  50
      ||||||||| |||||||||||| || ||| || |||| | || ||   ||
seq2  TGCAGCTTTCCCAGAAAGGGCTTTCCAATTGGGAAGCCT-GCCGAGAGAA  49

seq1  GCAGAAGGAAGAGCAGCAATCACAAAGG-CTAGAAGG-CCACCATGACTC  98
      || || ||| ||  |||| ||||||||| || || || |||||||| |||
seq2  GCTGAGGGAGGACAAGCATTCACAAAGGTCTGGAGGGCCCACCATG-CTC  98

seq1  ACTCTGTAGGAAATGAGGTTCCAGCTCCTTCACAATTACAATGA-GACAA  147
      ||||||| |  ||||||||||||||||||||||||||||||||| |||||
seq2  ACTCTGT-GAGAATGAGGTTCCAGCTCCTTCACAATTACAATGAGGACAA  147

seq1  AGCCCCATGACAAGTGACCTGGAATGATGTCAGCCTCTGCTCAACATGGG  197
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCCCCA-GACAAGTGACCTGGAATGATGTCAG-CTCTGCTCAACATGGG  195

seq1  AAGCTGCTAAACTTCAAAAGACTTTTTGAAAACAATTCATATTGGTCTCT  247
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  AAGCTGCTAAACTTCAAAAGAC-TTTTGAAAACAAATCATATTGGTCTCT  244

seq1  TCATCAAGAGCCCATGCAATAATTTCAATGTGTTAAAAAGTTATTTTCCT  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATC-AGAGCCCATGCAATAATTTCAATGTGTTAAAAAGTTATTTTCCT  293

seq1  CCCATCCCAGGTGTGTGCTTAGGATGCCTGGAGCTACCCAATGGGTCACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCAGGTGTGTGCTTAGGATGCCTGGAGCTACCCAATGGGTCACC  343

seq1  TGGGG-AAACGGTATGGGACAGTGAATGATGGAGATTAAAGGCCCAGGTG  396
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAACGGTATGGGACAGTGAATGATGGAGATTAAAGGCCCAGGTG  393

seq1  CCTCTGCTTCCCAAGGAACATCTCATGCCTACCAGAATGACAACTAAAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCCCAAGGAACATCTCATGCCTACCAGAATGACAACTAAAAT  443

seq1  TGTATTTCCTAAGCCATTTCAGGTTCTAAGATAAATTAGACAGACATGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCCTAAGCCATTTCAGGTTCTAAGATAAATTAGACAGACATGAA  493

seq1  GCTCCCTAATGGAATACGGTCTTGGCCTTGGGTTCATTCCCTACCTCCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTAATGGAATACGGTCTTGGCCTTGGGTTCATTCCCTACCTCCAA  543

seq1  AACCAATGGAAAAAGACAGAGTAGAAAGGGGGAGAGGGAAATTAAGCACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGGAAAAAGACAGAGTAGAAAGGGGGAGAGGGAAATTAAGCACT  593

seq1  TCTGTCCTGAGAACTTGAAATGTCACAAACATGTCCTCTCAGCATGTTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTGAGAACTTGAAATGTCACAAACATGTCCTCTCAGCATGTTCA  643

seq1  GTGTACAGACGAAGCTAACACTTTGTCCAGTGCTTTACAGTGATGGCAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAGACGAAGCTAACACTTTGTCCAGTGCTTTACAGTGATGGCAGA  693

seq1  GTACAGAGCTATGCCAAGGTCTCCATAGAAGCCAGCTGCCTGGTTGAAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGCTATGCCAAGGTCTCCATAGAAGCCAGCTGCCTGGTTGAAAG  743

seq1  TCAGAGTGTTAAGTGTAGAGATCTACATGCAGAGAAGCTAGTAGTTCTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGTTAAGTGTAGAGATCTACATGCAGAGAAGCTAGTAGTTCTGA  793

seq1  CCCTCTGTAGTGTCGTCCCATTCACACTCAGTTCAAACCAGTCAGTACAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTAGTGTCGTCCCATTCACACTCAGTTCAAACCAGTCAGTACAC  843

seq1  ATCCACCTGAGATTCAACAGAAAATTCACAGTTAATGTCAATCTGACAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGAGATTCAACAGAAAATTCACAGTTAATGTCAATCTGACAGA  893

seq1  TCAACTGCCACAAAACAGCACAGAAGCCCTTTCAGGTGCATTAGCTGTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGCCACAAAACAGCACAGAAGCCCTTTCAGGTGCATTAGCTGTTC  943

seq1  TGGAAAGTAAACCTTCCAGATCATTATTTCCACTCCTTATTTGGAAATCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTAAACCTTCCAGATCATTATTTCCACTCCTTATTTGGAAATCA  993

seq1  CAGTAAGTCACAGGCAACTGAAACTTTGAAACACAAAGCTTCCAATGTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGTCACAGGCAACTGAAACTTTGAAACACAAAGCTTCCAATGTGG  1043

seq1  GGCAAACACTGGAATGGCAGATATGCTAGAAATGGTTGATTGAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACACTGGAATGGCAGATATGCTAGAAATGGTTGATTGAG  1087