BAC Information

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BAC

Clone NameB6Ng01-006E17
Chromosome7 (Build37)
Map Location 107,684,799 - 107,815,008
singlet/doubletdoublet
Overlap geneChchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1
Upstream geneArrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112
Downstream geneB930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006E17.bB6Ng01-006E17.g
ACCDH843195DH843196
length1,078827
definitionDH843195|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E17, 5' end.DH843196|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,684,799 - 107,685,883)(107,814,257 - 107,815,008)
sequence
gaattcaatggtcaggaatgacacagaatgccattcagaggtaaaagagg
attagagttgtctggatatggctaggtgcaataactcactttccaccctg
aagcctagagagatggaaagttaagaaaagggtctccagggagcttgtgt
gcactgtcaatgaaagtggggaagagaaggcaggcagagtgaggaaagat
caatcccttggcccctgcaagatggttcctgagtaaagttgccagccacc
atacaacctgagttcaagaccaggacccacatgttaggacagaatcaatt
cttgctgttctctgctctccacacgtgtacctcaacgccacacataaata
cacaaatgtaaatagaaaatgcctcttcctttcacttcagcaattagggc
attctagatcctagttatggcatgggacacactgtgcatacatgtttctt
tgttttacttgggaatgaaaaatgtcccatttgaaattccttttctggat
cctgtgcccttcagcttacttggcaacccatgcggtaacacttcagacat
gggtccagtcagagctcttgctgatgaaaaggcataatggctacccgcct
cctccgtcactctcaggtggcctggagtcacctgagggtgtgtacacagt
ctctcagaacgatccaaggtgccttccctaggatccggtctccattggtc
cgctccttccgccctttcccggaagaggcgggctgaaggcgggctctaca
cggagagttcaccaatgggaattgcagagggctctgttcttccgcgtgtg
tgctcccgctgggtcggcttcctgcggagagaacagggggcgtccttatt
gcctacgaatccccgcgtctggggcggaacgcgctcgcacgctcttctgc
acctgcgggtgagcactgcgcacgcatccctacaccggatgcacagtggg
gacgcgggagtgctcctgaaacttgggagaggtgcttcagggacttggat
gcctgtaattttcttccttcctctccttcatgcctactagaaggccttgc
cagctgtcaggcatctagctgccttatt
gaattctttatgttggccagactgatctcaaactcacagaaatccccctg
cctctacatcctgagtgctgagattaaaggcacaagccatcacacctggt
gcaataggtttttaaagtaaaataaaaatgaaccaacagtgtctggctgg
ggctgtgcatacctgtaccctcggcacttgaaaggcaggaggagcttgaa
gctagcctgggtttcacagtaggatcttgtcttaaacaaacacagaaaca
caaaaatctaaaggaaaggaaagagggcagttcccatgtgtgaactgccc
tggggctcagttggggctgctcaccttcactcagaaaggtgcaaggtttc
tctcctttctatctggccagagctagagtgtgctttcttgcttgctttag
gattctcctaagcccctctacctgctgtgtctgtcatgtggctgacctcc
ctgtcagcttaactcaggcggcagagctttttctgtctcctttctcctct
tgactacagcttgtctatcccagagtaaaactttaaaaaaggaaatggat
gtggggcatggagagacggcacagcagttaagagcacttgttgtgccagg
cagtgggaggcagaggcaggcagatttctgagttcgaggccagcctggtc
tacaaagtgagttagtttccaggacagccaaggctacacagagaaaccct
gtctagaacccccccaccaaaaaaaaaaccccaaccaaccaaccaaccaa
acaaacaaaaaaacaacccccaaaccaaaccaacaaccaaacaaacaaac
aagtacttgttgctcttccagagaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_107684799_107685883
seq2: B6Ng01-006E17.b_30_1107

seq1  GAATTCAATGGTCAGGAATGACACAGAATGCCATTCAGAGGTAAAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGTCAGGAATGACACAGAATGCCATTCAGAGGTAAAAGAGG  50

seq1  ATTAGAGTTGTCTGGATATGGCTAGGTGCAATAACTCACTTTCCACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGTTGTCTGGATATGGCTAGGTGCAATAACTCACTTTCCACCCTG  100

seq1  AAGCCTAGAGAGATGGAAAGTTAAGAAAAGGGTCTCCAGGGAGCTTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGAGAGATGGAAAGTTAAGAAAAGGGTCTCCAGGGAGCTTGTGT  150

seq1  GCACTGTCAATGAAAGTGGGGAAGAGAAGGCAGGCAGAGTGAGGAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTCAATGAAAGTGGGGAAGAGAAGGCAGGCAGAGTGAGGAAAGAT  200

seq1  CAATCCCTTGGCCCCTGCAAGATGGTTCCTGAGTAAAGTTGCCAGCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTTGGCCCCTGCAAGATGGTTCCTGAGTAAAGTTGCCAGCCACC  250

seq1  ATACAACCTGAGTTCAAGACCAGGACCCACATGTTAGGACAGAATCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACCTGAGTTCAAGACCAGGACCCACATGTTAGGACAGAATCAATT  300

seq1  CTTGCTGTTCTCTGCTCTCCACACGTGTACCTCAACGCCACACATAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTTCTCTGCTCTCCACACGTGTACCTCAACGCCACACATAAATA  350

seq1  CACAAATGTAAATAGAAAATGCCTCTTCCTTTCACTTCAGCAATTAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTAAATAGAAAATGCCTCTTCCTTTCACTTCAGCAATTAGGGC  400

seq1  ATTCTAGATCCTAGTTATGGCATGGGACACACTGTGCATACATGTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATCCTAGTTATGGCATGGGACACACTGTGCATACATGTTTCTT  450

seq1  TGTTTTACTTGGGAATGAAAAATGTCCCATTTGAAATTCCTTTTCTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACTTGGGAATGAAAAATGTCCCATTTGAAATTCCTTTTCTGGAT  500

seq1  CCTGTGCCCTTCAGCTTACTTGGCAACCCATGCGGTAACACTTCAGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCCTTCAGCTTACTTGGCAACCCATGCGGTAACACTTCAGACAT  550

seq1  GGGTCCAGTCAGAGCTCTTGCTGATGAAAAGGCATAATGGCTACCCGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGTCAGAGCTCTTGCTGATGAAAAGGCATAATGGCTACCCGCCT  600

seq1  CCTCCGTCACTCTCAGGTGGCCTGGAGTCACCTGAGGGTGTGTACACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGTCACTCTCAGGTGGCCTGGAGTCACCTGAGGGTGTGTACACAGT  650

seq1  CTCTCAGAACGATCCAAGGTGCCTTCCCTAGGATCCGGTCTCCATTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAACGATCCAAGGTGCCTTCCCTAGGATCCGGTCTCCATTGGTC  700

seq1  CGCTCCTTCCGCCCTTTCCCGGAAGAGGCGGGCTGAAGGCGGGCTCTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCTTCCGCCCTTTCCCGGAAGAGGCGGGCTGAAGGCGGGCTCTACA  750

seq1  CGGAGAGTTCACCAATGGGAATTGCAGAGGGCTCTGTTCTTCCGCGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAGTTCACCAATGGGAATTGCAGAGGGCTCTGTTCTTCCGCGTGTG  800

seq1  TGCTCCCGCTGGGTCGGCTTCCTGCGGAGAGAACAGGGGGCGTCCTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCGCTGGGTCGGCTTCCTGCGGAGAGAACAGGGGGCGTCCTTATT  850

seq1  GCCTACGAATCCCCGCGTCTGGGGCGGAACGCGCTCGCACGCTCTTCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACGAATCCCCGCGTCTGGGGCGGAACGCGCTCGCACGCTCTTCTGC  900

seq1  ACCTGCGGGTGAGCACTGCGCACGCATCCCTACACCGGATGCACAGTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCGGGTGAGCACTGCGCACGCATCCCTACACCGGATGCACAGTGGG  950

seq1  GACGGCGGGAGTGCTCCTGAAAC-TGGGAGAGGTGCTTCAGGGGACTTGG  999
      ||| ||||||||||||||||||| |||||||||||||||| |||||||||
seq2  GAC-GCGGGAGTGCTCCTGAAACTTGGGAGAGGTGCTTCA-GGGACTTGG  998

seq1  ATGCCTGTATTTCTC-TCCTTCCTCTTCCTTGTCATGCCTTACTAGAAGG  1048
      ||||||||| || || ||||||||| ||||  ||||||| ||||||||||
seq2  ATGCCTGTAATTTTCTTCCTTCCTC-TCCT--TCATGCC-TACTAGAAGG  1044

seq1  CCTTGCCAAGCTGTCAGGCATCTAGCCTGCCCTTATT  1085
      ||||||| ||||||||||||||||| ||| |||||||
seq2  CCTTGCC-AGCTGTCAGGCATCTAG-CTG-CCTTATT  1078

seq1: chr7_107814257_107815008
seq2: B6Ng01-006E17.g_65_817 (reverse)

seq1  TGTTTGGTTGGTTGGTTGGTTGGGGTTTTTTTTTTGGTGGGGGGGTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTTGGTTGGTTGGTTGGGGTTTTTTTTTTGGTGGGGGGGTTCTA  50

seq1  GACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGG-AACTAACTCACTTT  99
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAAACTAACTCACTTT  100

seq1  GTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCA  150

seq1  CTGCCTGGCACAACAAGTGCTCTTAACTGCTGTGCCGTCTCTCCATGCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGCACAACAAGTGCTCTTAACTGCTGTGCCGTCTCTCCATGCCC  200

seq1  CACATCCATTTCCTTTTTTAAAGTTTTACTCTGGGATAGACAAGCTGTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCATTTCCTTTTTTAAAGTTTTACTCTGGGATAGACAAGCTGTAG  250

seq1  TCAAGAGGAGAAAGGAGACAGAAAAAGCTCTGCCGCCTGAGTTAAGCTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGAGAAAGGAGACAGAAAAAGCTCTGCCGCCTGAGTTAAGCTGA  300

seq1  CAGGGAGGTCAGCCACATGACAGACACAGCAGGTAGAGGGGCTTAGGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGTCAGCCACATGACAGACACAGCAGGTAGAGGGGCTTAGGAGA  350

seq1  ATCCTAAAGCAAGCAAGAAAGCACACTCTAGCTCTGGCCAGATAGAAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAAGCAAGCAAGAAAGCACACTCTAGCTCTGGCCAGATAGAAAGG  400

seq1  AGAGAAACCTTGCACCTTTCTGAGTGAAGGTGAGCAGCCCCAACTGAGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCTTGCACCTTTCTGAGTGAAGGTGAGCAGCCCCAACTGAGCC  450

seq1  CCAGGGCAGTTCACACATGGGAACTGCCCTCTTTCCTTTCCTTTAGATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGTTCACACATGGGAACTGCCCTCTTTCCTTTCCTTTAGATTT  500

seq1  TTGTGTTTCTGTGTTTGTTTAAGACAAGATCCTACTGTGAAACCCAGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTCTGTGTTTGTTTAAGACAAGATCCTACTGTGAAACCCAGGCT  550

seq1  AGCTTCAAGCTCCTCCTGCCTTTCAAGTGCCGAGGGTACAGGTATGCACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAAGCTCCTCCTGCCTTTCAAGTGCCGAGGGTACAGGTATGCACA  600

seq1  GCCCCAGCCAGACACTGTTGGTTCATTTTTATTTTACTTTAAAAACCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCCAGACACTGTTGGTTCATTTTTATTTTACTTTAAAAACCTAT  650

seq1  TGCACCAGGTGTGATGGCTTGTGCCTTTAATCTCAGCACTCAGGATGTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAGGTGTGATGGCTTGTGCCTTTAATCTCAGCACTCAGGATGTAG  700

seq1  AGGCAGGGGGATTTCTGTGAGTTTGAGATCAGTCTGGCCAACATAAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGGGATTTCTGTGAGTTTGAGATCAGTCTGGCCAACATAAAGAA  750

seq1  TTC  752
      |||
seq2  TTC  753