BAC Information

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BAC

Clone NameB6Ng01-008G15
Chromosome7 (Build37)
Map Location 16,655,961 - 16,741,663
singlet/doubletdoublet
Overlap geneZfp541, Napa, Kptn, Slc8a2
Upstream geneLOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1
Downstream geneMrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008G15.bB6Ng01-008G15.g
ACCDH844678DH844679
length1,1031,180
definitionDH844678|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G15, 5' end.DH844679|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,655,961 - 16,657,064)(16,740,472 - 16,741,663)
sequence
gaattcaatatgaatttagtattttctttcccttccttcccttttcattt
ctctctcctcttacctttgcttcccctccccatctttctcctctcttcat
ccctatcttccttcctccctcttctcttttcttttcttctcctgcttgtt
tttcctaggccagtcttgaactcctggattcaaggacttgtctcgctcaa
cttctggcatgctagaagtataggtgggcaccactgcatatccccttatc
ttttaatttgttttaagatcattcatatattcttctgagtgaattttgat
aatctgtctatttctagaaatttgctcattgatttttttgtatctgagtt
caatgacttaacacattgggtgtgtattgtagcctatcttctgtgtgagt
gcactgtctaaacacagttcttcatagtacttccttgtaatcttttttat
ttttagaatgtggttagtaaaacttcctcttttattcctttttggggatc
agggtgataggactattgagacagcatctcatgaaacacaggctggcctc
aaactatctatttacccaaggatatcttgcctccatatcccaaatgttgg
gactacaggcatgcctggtttatgtgatgctgagtggagcctagaagttt
gagtgtgctaggataggcattttactaactgagctacacccccaacctaa
cttcaacatttactctatattaaaactcattgtatttacttttttttttt
tttttttgtatgagactttccagtccaggctcttttacacacacagtaag
cctcccttttgtgcagtggtatttcatgtgtctcctggccacatgggaac
aagtggacaagcatccccaggcttaactggggcctggatgtcccagtgga
ctgactttgtgcctgcacagactctaactttgagttcctgttgctggcct
tggattttccttgcttgtcttttctgcctagacacacattaaagtctatt
tgatcttcttaatatttataactggaaggcgaggactctgccagtccacc
atgtgttattcttttgtttagtgaaagaaaggaagaaatggaatcatgga
tct
gaattccttgaggttagcaacagccatgtcctcagataaaaatatgcact
ctcgcagggtgtggtggcgcacgcctctaatcccagcactcaggaggcag
agaggcaggcggatttatgagttcaaggccagcctggtctacagagtgag
ttccaggacagccagggctatacagagaaaccctgtctcgaaaaaccaaa
ccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaacaaaacaaa
acaaaacaaaacaaaacaaaacaaaaaaacccactctcccagaattcccc
tgcttctagtaatgctaaaatacatagtttcccatgatcccttgcaacag
tgggtcactctctccttctctgcttctctggcaataagacaaaaggagag
attctgaaatgttctagctccctcggtacaggcaccctgcatgtgtttat
attctgagctttgcaaagagtcccatcctgtcctttactgtgaccagatt
ggcttttggtacccagacgtttgcgtgatttgagagcctagaagtatctg
ggaccctcatcctgagttgataagcaggaggtgatgagtgtgaaacagag
caggctctcgggtgccaactagtatagctggaagggtgctggtaaggaag
gtggccagcggccagcaggcaggaagacaaggcgaggctaagccagctgc
caaatcctgaagccacttgccaggatttgcgattataaatccccaagttt
tctctctaagaaacaggagaacccttgcagcagtggaggaagagcgtgac
cctgcccccactgtaggactccaagcacaacatcccagcttgctctctct
tttctaacttattacttaaccgctggctagctgaagaaataaaaccttga
ctctgtacgtatccaagtgtgccttgtgggtttcttagttctgcaagacc
aaactattagcttcacacagtaaaatggaaatcagaaacaaaatgggaaa
actcagcaagaccaaccccagtcttttctggctccactactttctacttg
gttctactaggactgtgacttgacactttgaccacttgagggtcgagggc
ttactctgcatgatgagcaaaataggagcaaatagaagcaaaaggaaccg
actccagcatgctgggctatgtttagtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16655961_16657064
seq2: B6Ng01-008G15.b_45_1147

seq1  GAATTCAATATGAATTTAGTATTTTCTTTCCCTTCCTTCCCTTTTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGAATTTAGTATTTTCTTTCCCTTCCTTCCCTTTTCATTT  50

seq1  CTCTCTCCTCTTACCTTTGCTTCCCCTCCCCATCTTTCTCCTCTCTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTCTTACCTTTGCTTCCCCTCCCCATCTTTCTCCTCTCTTCAT  100

seq1  CCCTATCTTCCTTCCTCCCTCTTCTCTTTTCTTTTCTTCTCCTGCTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTTCCTTCCTCCCTCTTCTCTTTTCTTTTCTTCTCCTGCTTGTT  150

seq1  TTTCCTAGGCCAGTCTTGAACTCCTGGATTCAAGGACTTGTCTCGCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGGCCAGTCTTGAACTCCTGGATTCAAGGACTTGTCTCGCTCAA  200

seq1  CTTCTGGCATGCTAGAAGTATAGGTGGGCACCACTGCATATCCCCTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCATGCTAGAAGTATAGGTGGGCACCACTGCATATCCCCTTATC  250

seq1  TTTTAATTTGTTTTAAGATCATTCATATATTCTTCTGAGTGAATTTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTGTTTTAAGATCATTCATATATTCTTCTGAGTGAATTTTGAT  300

seq1  AATCTGTCTATTTCTAGAAATTTGCTCATTGATTTTTTTGTATCTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCTATTTCTAGAAATTTGCTCATTGATTTTTTTGTATCTGAGTT  350

seq1  CAATGACTTAACACATTGGGTGTGTATTGTAGCCTATCTTCTGTGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTTAACACATTGGGTGTGTATTGTAGCCTATCTTCTGTGTGAGT  400

seq1  GCACTGTCTAAACACAGTTCTTCATAGTACTTCCTTGTAATCTTTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTCTAAACACAGTTCTTCATAGTACTTCCTTGTAATCTTTTTTAT  450

seq1  TTTTAGAATGTGGTTAGTAAAACTTCCTCTTTTATTCCTTTTTGGGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATGTGGTTAGTAAAACTTCCTCTTTTATTCCTTTTTGGGGATC  500

seq1  AGGGTGATAGGACTATTGAGACAGCATCTCATGAAACACAGGCTGGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGATAGGACTATTGAGACAGCATCTCATGAAACACAGGCTGGCCTC  550

seq1  AAACTATCTATTTACCCAAGGATATCTTGCCTCCATATCCCAAATGTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATCTATTTACCCAAGGATATCTTGCCTCCATATCCCAAATGTTGG  600

seq1  GACTACAGGCATGCCTGGTTTATGTGATGCTGAGTGGAGCCTAGAAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGGCATGCCTGGTTTATGTGATGCTGAGTGGAGCCTAGAAGTTT  650

seq1  GAGTGTGCTAGGATAGGCATTTTACTAACTGAGCTACACCCCCAACCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGCTAGGATAGGCATTTTACTAACTGAGCTACACCCCCAACCTAA  700

seq1  CTTCAACATTTACTCTATATTAAAACTCATTGTATTTACTTTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACATTTACTCTATATTAAAACTCATTGTATTTACTTTTTTTTTTT  750

seq1  TTTTTTTGTATGAGACTTTCCCAGTCCAGGCTCTTTTACACACACAGTAA  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTTTTGTATGAGACTTT-CCAGTCCAGGCTCTTTTACACACACAGTAA  799

seq1  GCCTCCC-TTTGTGCAGTGGTATTTCATGTGTCTCCTGGCCACAT-GGAA  848
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCTCCCTTTTGTGCAGTGGTATTTCATGTGTCTCCTGGCCACATGGGAA  849

seq1  CAAGTGGACAAGCATCCCCAGGCTTAAACTTGGGCCTGGATGTCCCAGTG  898
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  CAAGTGGACAAGCATCCCCAGGCTT-AACTGGGGCCTGGATGTCCCAGTG  898

seq1  GACTGAC-TTGTGCCTGCACAGACTCTAACTTTGAGTTTCCTTGTTGCTG  947
      ||||||| ||||||||||||||||||||||||||||||  | ||||||||
seq2  GACTGACTTTGTGCCTGCACAGACTCTAACTTTGAGTT--CCTGTTGCTG  946

seq1  GCCTTGGGATTTTCCTTGCTTGTCTTTTCTGCCTAGACACACATTAAAGT  997
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTT-GGATTTTCCTTGCTTGTCTTTTCTGCCTAGACACACATTAAAGT  995

seq1  CTATTTGATCTTTCTAATATTTATAACTGGAGGCAGAGGACTCTG-CAGT  1046
      ||||||||||||  ||||||||||||||||| |  |||||||||| ||||
seq2  CTATTTGATCTTCTTAATATTTATAACTGGAAGGCGAGGACTCTGCCAGT  1045

seq1  CCACCATGTGTTATTCTTTTGTCTAGTTGACAG--ATGAGGAAATGGAGT  1094
      |||||||||||||||||||||| ||| ||| ||  | || ||||||||  
seq2  CCACCATGTGTTATTCTTTTGTTTAG-TGAAAGAAAGGAAGAAATGGA-A  1093

seq1  TCATGGATCT  1104
      ||||||||||
seq2  TCATGGATCT  1103

seq1: chr7_16740472_16741663
seq2: B6Ng01-008G15.g_64_1243 (reverse)

seq1  GAGACTAAACACATGCCCAGCATGCCTGAGTCTGGCTCCTCTTTTGCCTT  50
      ||||||||||| | |||||||||||  ||||| || ||  |||||| |||
seq2  GAGACTAAACATA-GCCCAGCATGCTGGAGTC-GGTTC--CTTTTG-CTT  45

seq1  CTTATTTTGCCTCCTATTTTGCCCTCATCATTGCAGAGT-AGCCCCTGCA  99
      | |||||   |||||||||||  ||||||| |||||||| |||||  |  
seq2  C-TATTT--GCTCCTATTTTG--CTCATCA-TGCAGAGTAAGCCCTCGAC  89

seq1  CCTCAAAGTGTCAAAGTGTCAAGTCCACAGTCCTAGTAGGAACAAAGTAG  149
      ||||||   ||||||||||||||| ||||||||||||| |||| ||||||
seq2  CCTCAAGTGGTCAAAGTGTCAAGT-CACAGTCCTAGTA-GAACCAAGTAG  137

seq1  AAAGTAGGTGGAGCCAG-AAAGGCTGGGGTGTGTC-TGCTGAGTTTTCCA  197
      |||||| |||||||||| |||| |||||||  ||| ||||||||||||| 
seq2  AAAGTA-GTGGAGCCAGAAAAGACTGGGGTTGGTCTTGCTGAGTTTTCCC  186

seq1  TTTTTGTTTCTGATTTCCATTTTACTTGTGGTTGGAGCTAAAAGTTTGGT  247
       |||||||||||||||||||||||| ||||  || |||||| ||||||||
seq2  ATTTTGTTTCTGATTTCCATTTTAC-TGTG--TGAAGCTAATAGTTTGGT  233

seq1  CTTGCAGAACTAAGAAA-CCACAAGGCACACTTGGATACGTACAGAGTCA  296
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTGCAGAACTAAGAAACCCACAAGGCACACTTGGATACGTACAGAGTCA  283

seq1  AGGTTTTATTTCTTCAGCTAGCCAGCGGTTAAGTAATAAGTTAGAAAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTATTTCTTCAGCTAGCCAGCGGTTAAGTAATAAGTTAGAAAAGA  333

seq1  GAGAGCAAGCT-GGATGTTGTGCTTGGAGTCCTACAGTGGGGGCAGGGTC  395
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAGCTGGGATGTTGTGCTTGGAGTCCTACAGTGGGGGCAGGGTC  383

seq1  ACGCTCTTCCTCCACTGCTGCAAGGGTTCTCCTGTTTCTTAGAGAGAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCTTCCTCCACTGCTGCAAGGGTTCTCCTGTTTCTTAGAGAGAAAA  433

seq1  CTTGGGGATTTATAATCGCAAATCCTGGCAAGTGGCTTCAGGATTTGGCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGATTTATAATCGCAAATCCTGGCAAGTGGCTTCAGGATTTGGCA  483

seq1  GCTGGCTTAGCCTCGCCTTGTCTTCCTGCCTGCTGGCCGCTGGCCACCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTAGCCTCGCCTTGTCTTCCTGCCTGCTGGCCGCTGGCCACCTT  533

seq1  CCTTACCAGCACCCTTCCAGCTATACTAGTTGGCACCCGAGAGCCTGCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCAGCACCCTTCCAGCTATACTAGTTGGCACCCGAGAGCCTGCTC  583

seq1  TGTTTCACACTCATCACCTCCTGCTTATCAACTCAGGATGAGGGTCCCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACACTCATCACCTCCTGCTTATCAACTCAGGATGAGGGTCCCAG  633

seq1  ATACTTCTAGGCTCTCAAATCACGCAAACGTCTGGGTACCAAAAGCCAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCTAGGCTCTCAAATCACGCAAACGTCTGGGTACCAAAAGCCAAT  683

seq1  CTGGTCACAGTAAAGGACAGGATGGGACTCTTTGCAAAGCTCAGAATATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACAGTAAAGGACAGGATGGGACTCTTTGCAAAGCTCAGAATATA  733

seq1  AACACATGCAGGGTGCCTGTACCGAGGGAGCTAGAACATTTCAGAATCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGCAGGGTGCCTGTACCGAGGGAGCTAGAACATTTCAGAATCTC  783

seq1  TCCTTTTGTCTTATTGCCAGAGAAGCAGAGAAGGAGAGAGTGACCCACTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGTCTTATTGCCAGAGAAGCAGAGAAGGAGAGAGTGACCCACTG  833

seq1  TTGCAAGGGATCATGGGAAACTATGTATTTTAGCATTACTAGAAGCAGGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGGGATCATGGGAAACTATGTATTTTAGCATTACTAGAAGCAGGG  883

seq1  GAATTCTGGGAGAGTGGGTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGAGTGGGTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  933

seq1  GTTTTGTTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTT  983

seq1  GGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  1033

seq1  ACTCTGTAGACCAGGCTGGCCTTGAACTCATAAATCCGCCTGCCTCTCTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTTGAACTCATAAATCCGCCTGCCTCTCTG  1083

seq1  CCTCCTGAGTGCTGGGATTAGAGGCGTGCGCCACCACACCCTGCGAGAGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGAGTGCTGGGATTAGAGGCGTGCGCCACCACACCCTGCGAGAGT  1133

seq1  GCATATTTTTATCTGAGGACATGGCTGTTGCTAACCTCAAGGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTTATCTGAGGACATGGCTGTTGCTAACCTCAAGGAATTC  1180