BAC Information

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BAC

Clone NameB6Ng01-008J24
Chromosome7 (Build37)
Map Location 29,462,505 - 29,574,351
singlet/doubletdoublet
Overlap geneFbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik
Upstream geneC030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik
Downstream geneHnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008J24.bB6Ng01-008J24.g
ACCDH844823DH844824
length1,123525
definitionDH844823|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J24, 5' end.DH844824|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,462,505 - 29,463,645)(29,573,821 - 29,574,351)
sequence
gaattcagctggccaatgtggcctttaatcccagcaccgaggaggcagag
gcaggcagaactctgcaagttcaaggctagcctggtctacagagtcaatt
ccaagacagcgagaacctctccccacccccacccccacccccaaaagtgg
ggacttgttctgttctggcaggaataaatgtattctaatgagacccttgc
gtctctcagtctgtcagaccattaaaaaacactggatcccagagaaatga
acatttcctcaggagtctccttctgcaagaagggaaaagccctaggcaga
gcggagccttgtctccatggagagattccacccccttccaggaagagcct
gaagcacaggcaaggccgtgtcagccccagctgcgccacaccttgacgaa
gactgctcaaaagcgcagatctctggcctctgtttaaattttaatctcgc
ttcaggggccccaaaacagtttccctgggtcacttgtccttctcccaaat
gtggccacactgaataaatctcctttttcggctttatattaagaaaaagg
cagtggtggcgcacgcctttaatcccagcacttgggaggcagagacaggc
ggatttctgagttcgaggccagcctggtctacaaagtgagttccaggaca
gtcagggctatacagagaaaccctgtctcaaaaaacaaaaaaacaaaaac
aaaaaagaaaagaaaagaaaaataatagaacttgttaggaagaggaccga
gggacagggtcccaaggacctgtcgtggagtaccaatccgagaagactgc
ttgagcatgcgtttaagccaatagaaaatctttattaatggtctggtgac
tgcgatgggtgctcagggtcccagtgtggccccaagtctttctcgaggta
accttttaagtacaaaacccatatcctgggttgatccgcttccgtacaac
aacagttaaccagaaacagaattatttttttagttgcaaataaaaaaaaa
atcatcacacactgaattacatacccaaatctttaaactgtttcgtctag
aaacactggagaaatattatttcgcaacacatatctgtcaataatataga
cttactatttgcctcacctgctt
ctggcccagcatttaggtgacctgctggcctaggaaaaggtctgataagc
aagctagccctattctgaaggctccatttctcttagggcattgtgtgcaa
gccagataattatcagctacataaattactgagctgccaactagcaactt
caggtgttggggtggggagcacacctcagggacaggcagggaagaagggt
gaagagggggaggcagtgctcccttgggaggagatccggacatgggtagg
gctgggcagggttggatggaggcagctgtgggtgcaaatgggaccagatg
tttggtccctgggggccctacctgttccgaggggagccagagcatcagga
agtgaaagtgctctctagagaggaagccagtaaggcaggggaagaggcgg
ggctggggcatctgaaatcatcttcctctgtctttccggggtcagtatta
ggggatcctctttggaggactgagcctctggcggctgagagccagggtaa
aaagtcaccaggctaccctctccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_29462505_29463645
seq2: B6Ng01-008J24.b_44_1166

seq1  GAATTCAGCTGGCCAATGTGGCCTTTAATCCCAGCACCGAGGAGGCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGGCCAATGTGGCCTTTAATCCCAGCACCGAGGAGGCAGAG  50

seq1  GCAGGCAGAACTCTGCAAGTTCAAGGCTAGCCTGGTCTACAGAGTCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGAACTCTGCAAGTTCAAGGCTAGCCTGGTCTACAGAGTCAATT  100

seq1  CCAAGACAGCGAGAACCTCTCCCCACCCCCACCCCCACCCCCAAAAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGCGAGAACCTCTCCCCACCCCCACCCCCACCCCCAAAAGTGG  150

seq1  GGACTTGTTCTGTTCTGGCAGGAATAAATGTATTCTAATGAGACCCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGTTCTGTTCTGGCAGGAATAAATGTATTCTAATGAGACCCTTGC  200

seq1  GTCTCTCAGTCTGTCAGACCATTAAAAAACACTGGATCCCAGAGAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCAGTCTGTCAGACCATTAAAAAACACTGGATCCCAGAGAAATGA  250

seq1  ACATTTCCTCAGGAGTCTCCTTCTGCAAGAAGGGAAAAGCCCTAGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCTCAGGAGTCTCCTTCTGCAAGAAGGGAAAAGCCCTAGGCAGA  300

seq1  GCGGAGCCTTGTCTCCATGGAGAGATTCCACCCCCTTCCAGGAAGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGCCTTGTCTCCATGGAGAGATTCCACCCCCTTCCAGGAAGAGCCT  350

seq1  GAAGCACAGGCAAGGCCGTGTCAGCCCCAGCTGCGCCACACCTTGACGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACAGGCAAGGCCGTGTCAGCCCCAGCTGCGCCACACCTTGACGAA  400

seq1  GACTGCTCAAAAGCGCAGATCTCTGGCCTCTGTTTAAATTTTAATCTCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCAAAAGCGCAGATCTCTGGCCTCTGTTTAAATTTTAATCTCGC  450

seq1  TTCAGGGGCCCCAAAACAGTTTCCCTGGGTCACTTGTCCTTCTCCCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGCCCCAAAACAGTTTCCCTGGGTCACTTGTCCTTCTCCCAAAT  500

seq1  GTGGCCACACTGAATAAATCTCCTTTTTCGGCTTTATATTAAGAAAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACACTGAATAAATCTCCTTTTTCGGCTTTATATTAAGAAAAAGG  550

seq1  CAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGC  600

seq1  GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA  650

seq1  GTCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAAAAAACAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAAAAAACAAAAAC  700

seq1  AAAAAAGAAAAGAAAAGAAAAATAATAGAACTTGTTAGGAAGAGGACCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAGAAAAGAAAAATAATAGAACTTGTTAGGAAGAGGACCGA  750

seq1  GGGACAGGGTCCCAAGGACCTGTCGTGGAGTACCAATCCGAGAAGACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGGTCCCAAGGACCTGTCGTGGAGTACCAATCCGAGAAGACTGC  800

seq1  TTGAGCATGCGTTTAAGCCAATAGAAAATCTTTATTAATGGTCTGGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCATGCGTTTAAGCCAATAGAAAATCTTTATTAATGGTCTGGTGAC  850

seq1  TGCGATGGGTGCTCAGGGTCCCAGTGTGGCCCCAAGTCTTTCTCGAGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATGGGTGCTCAGGGTCCCAGTGTGGCCCCAAGTCTTTCTCGAGGTA  900

seq1  ACCTTTTAAGTACAAAACCCATATCCTGGGTTGATCCGCTTCCGTTAACA  950
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  ACCTTTTAAGTACAAAACCCATATCCTGGGTTGATCCGCTTCCGT--ACA  948

seq1  ACAACAGTTAACCAGAAACAGAATTATTTTTTTAAGTTGCAAATAAAAAA  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAACAGTTAACCAGAAACAGAATTATTTTTTT-AGTTGCAAATAAAAAA  997

seq1  AAAATCATCACACACTGAAATTAACCATACCCAAATCTTTAAAAACTGTT  1050
      ||||||||||||||||| |||||  |||||||||||||||  |||||| |
seq2  AAAATCATCACACACTG-AATTA--CATACCCAAATCTTT--AAACTG-T  1041

seq1  TTCGTTCTAAGAAACACTGAGGACATATTATTTCAGCAACACATATCTGT  1100
      |||| ||| ||||||||||  || |||||||||| |||||||||||||||
seq2  TTCG-TCT-AGAAACACTGGAGAAATATTATTTC-GCAACACATATCTGT  1088

seq1  CAATTATATTATAAAACTTTACTATTTTGCCTCAACTGCTT  1141
      |||| ||||    | || |||||| ||||||||| ||||||
seq2  CAATAATAT----AGAC-TTACTA-TTTGCCTCACCTGCTT  1123

seq1: chr7_29573821_29574351
seq2: B6Ng01-008J24.g_66_595 (reverse)

seq1  TGGAGAGGGTAGCCTGGTGACTTTTTACCCTGGCTCTCAGCCTGCCAGAG  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGAGAGGGTAGCCTGGTGACTTTTTACCCTGGCTCTCAGCC-GCCAGAG  49

seq1  GCTCAGTCCTCCAAAGTGGATCCCCTAATACTGACCCCGGAAAGACAGAG  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTCAGTCCTCCAAAGAGGATCCCCTAATACTGACCCCGGAAAGACAGAG  99

seq1  GAAGGTGATTTCAGATGCCCCAGCCCCGCCTCTTCCCCTGCCTTCCTGGC  150
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAGATGATTTCAGATGCCCCAGCCCCGCCTCTTCCCCTGCCTTACTGGC  149

seq1  TTCCTCTCTAGAGAGCACTTTCACTTCCTGCTGCTCTGGCTCCCCTCGGA  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCCTCTCTAGAGAGCACTTTCACTTCCTGATGCTCTGGCTCCCCTCGGA  199

seq1  ACAGGTAGGGCCCCCAGGGACCAAACATCTGGTCCCATTTGCACCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGGGCCCCCAGGGACCAAACATCTGGTCCCATTTGCACCCACAG  249

seq1  CTGCCTCCATCCAACCCTGCCCAGCCCTACCCATGTCCGGATCTCCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCATCCAACCCTGCCCAGCCCTACCCATGTCCGGATCTCCTCCC  299

seq1  AAGGGAGCACTGCCTCCCCCTCTTCACCCTTCTTCCCTGCCTGTCCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGCACTGCCTCCCCCTCTTCACCCTTCTTCCCTGCCTGTCCCTGA  349

seq1  GGTGTGCTCCCCACCCCAACACCTGAAGTTGCTAGTTGGCAGCTCAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTCCCCACCCCAACACCTGAAGTTGCTAGTTGGCAGCTCAGTAA  399

seq1  TTTATGTAGCTGATAATTATCTGGCTTGCACACAATGCCCTAAGAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAGCTGATAATTATCTGGCTTGCACACAATGCCCTAAGAGAAAT  449

seq1  GGAGCCTTCAGAATAGGGCTAGCTTGCTTATCAGACCTTTTCCTAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTTCAGAATAGGGCTAGCTTGCTTATCAGACCTTTTCCTAGGCCA  499

seq1  GCAGGTCACCTAAATGCTGGGCCAGGAATTC  531
      |||||||||||||||||||||||||||||||
seq2  GCAGGTCACCTAAATGCTGGGCCAGGAATTC  530