BAC Information

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BAC

Clone NameB6Ng01-009M13
Chromosome7 (Build37)
Map Location 50,279,624 - 50,280,719
singlet/doubletsinglet
Overlap geneLOC668612
Upstream geneEG628444, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543
Downstream geneLOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009M13.bB6Ng01-009M13.g
ACCDH845633DH845634
length1,0761,080
definitionDH845633|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M13, 5' end.DH845634|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtattgaatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcatatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaaaatgttcttggattcggttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgaat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgactcaactt
tggtacctggtatctgtccagaactttgtccatttcgcccaggttttcca
gttttgttgagtataaccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgctctttagtaagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattcttttg
aatagttcttcttgtttccacttggttgatttcacctctgagttgatatt
tcctgccgtctacttctcttgggtgaattgcttcctttttttctagagct
tttagatgtgttgtcagctgctagatgtgctctcttctcgtttcttcttg
gaggcattcaaagctagagtttcctctagaatgctccattgtgtccaaag
gtttgggatgtgtggcctcatttcataaacctaaaagctcttaatttttt
cttttttcttcttgaccagaaataat
gaattcatattctgattcaatatggaaaaatatggagaagattcaggaat
catcagcaaatgtgattgttatttatggggacattgtttctttacaaggt
ttaatgcgacacattgcacaactgttagtgacatggaaagtctgggtctt
gaactctcaatgggatattgactactattctgattattttatgatagaat
cctttcatgggagtctcattttttcacaccatcatgaagagatggttgag
tttgtgaattttgttcaaacagtgaatccctacacataccctgaagatga
ttatcttcctaagttttgggtttttttcttcaagtgctctttttctgagt
ttgattgccaacttttggagaactgccaacccaatgcatctttggactta
ctgctcagacacatttttgacccagccatgagtgaagagagctacaacct
atacaatgctgtgtatgctcttgctcacagcctccatgagatgactgttc
aacaaatacagacacaaccatatgccaatggagacggaatggcattcttg
ccctggcaggtaatatcccttcctgtgtattatcagcaatgtcacatttt
ttattatttattgaggtttagtattaggcatcaaaggctttagaatatgt
tgggaattagcaagcaagagaatatctgtttcactctgatgttcaatgca
aaatctcgagttcagtatctttataaattgtgtgccagggacagaggaaa
aaacatattaaactaatcctaaattcatataacaaagttgctttacaggc
tttttcataatatcttcaatgtgaaaagttgagaattcccatttatattc
ttcagagcagacgctggcacatagattcttaagaattaaaattcttctga
tagtacatgggattatagagtaaggatcactttaattgaactttcacttg
agagtcttcattttcatcatgcagatctgatatattctaaagttacaggt
ggggtgggctgtcaaagaattgaatgactgatcactatacactttttctt
agctatattttattgaatgatttctcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50279624_50280719
seq2: B6Ng01-009M13.g_70_1149

seq1  GAATTCATATTCTGATTCAATATGGAAAAATATGGAGAAGATTCAGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCTGATTCAATATGGAAAAATATGGAGAAGATTCAGGAAT  50

seq1  CATCAGCAAATGTGATTGTTATTTATGGGGACATTGTTTCTTTACAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCAAATGTGATTGTTATTTATGGGGACATTGTTTCTTTACAAGGT  100

seq1  TTAATGCGACACATTGCACAACTGTTAGTGACATGGAAAGTCTGGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCGACACATTGCACAACTGTTAGTGACATGGAAAGTCTGGGTCTT  150

seq1  GAACTCTCAATGGGATATTGACTACTATTCTGATTATTTTATGATAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCAATGGGATATTGACTACTATTCTGATTATTTTATGATAGAAT  200

seq1  CCTTTCATGGGAGTCTCATTTTTTCACACCATCATGAAGAGATGGTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATGGGAGTCTCATTTTTTCACACCATCATGAAGAGATGGTTGAG  250

seq1  TTTGTGAATTTTGTTCAAACAGTGAATCCCTACACATACCCTGAAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAATTTTGTTCAAACAGTGAATCCCTACACATACCCTGAAGATGA  300

seq1  TTATCTTCCTAAGTTTTGGGTTTTTTTCTTCAAGTGCTCTTTTTCTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCCTAAGTTTTGGGTTTTTTTCTTCAAGTGCTCTTTTTCTGAGT  350

seq1  TTGATTGCCAACTTTTGGAGAACTGCCAACCCAATGCATCTTTGGACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCCAACTTTTGGAGAACTGCCAACCCAATGCATCTTTGGACTTA  400

seq1  CTGCTCAGACACATTTTTGACCCAGCCATGAGTGAAGAGAGCTACAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGACACATTTTTGACCCAGCCATGAGTGAAGAGAGCTACAACCT  450

seq1  ATACAATGCTGTGTATGCTCTTGCTCACAGCCTCCATGAGATGACTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGCTGTGTATGCTCTTGCTCACAGCCTCCATGAGATGACTGTTC  500

seq1  AACAAATACAGACACAACCATATGCCAATGGAGACGGAATGGCATTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATACAGACACAACCATATGCCAATGGAGACGGAATGGCATTCTTG  550

seq1  CCCTGGCAGGTAATATCCCTTCCTGTGTATTATCAGCAATGTCACATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCAGGTAATATCCCTTCCTGTGTATTATCAGCAATGTCACATTTT  600

seq1  TTATTATTTATTGAGGTTTAGTATTAGGCATCAAAGGCTTTAGAATATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTATTGAGGTTTAGTATTAGGCATCAAAGGCTTTAGAATATGT  650

seq1  TGGGAATTAGCAAGCAAGAGAATATCTGTTTCACTCTGATGTTCAATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTAGCAAGCAAGAGAATATCTGTTTCACTCTGATGTTCAATGCA  700

seq1  AAATCTCGAGTTCAGTATCTTTATAAATTGTGTGCCAGGGACAGAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCGAGTTCAGTATCTTTATAAATTGTGTGCCAGGGACAGAGGAAA  750

seq1  AAACATATTAAACTAATCCTAAATTCATATAACAAAGTTGCTTTACAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTAAACTAATCCTAAATTCATATAACAAAGTTGCTTTACAGGC  800

seq1  TTTTTCATAATATCTTCAATGTGAAAAGTTGAGAATTCCCATTTATATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATAATATCTTCAATGTGAAAAGTTGAGAATTCCCATTTATATTC  850

seq1  CTCAGAGCAGACGCTGGCACAATAGATCCTTAAGAATTAAAATTCTTCTG  900
       ||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TTCAGAGCAGACGCTGGCAC-ATAGATTCTTAAGAATTAAAATTCTTCTG  899

seq1  AATAGTAACATGGGATTATAGAGTTAAGGATCACTTTAAATTGAACTTTC  950
       ||||| |||||||||||||||| ||||||||||||| ||||||||||||
seq2  -ATAGT-ACATGGGATTATAGAG-TAAGGATCACTTT-AATTGAACTTTC  945

seq1  AACTTGAGAGTCTTCATTTTACACATGCAAGATCTGAATATATTCTAAAA  1000
       |||||||||||||||||||   ||||| ||||||| ||||||||| |||
seq2  -ACTTGAGAGTCTTCATTTTCATCATGC-AGATCTG-ATATATTCT-AAA  991

seq1  GTTAACAGTTGTGGCTGGCTGTTCAAAGAATTTTGAATGAACTGAATCCA  1050
      ||| |||| || ||  ||||| ||||||||  ||||||| |||||   ||
seq2  GTT-ACAGGTGGGGTGGGCTG-TCAAAGAA--TTGAATG-ACTGA--TCA  1034

seq1  CATAACACTTTTTCTTAGCTATATTTAATTGAATGATTTCTCCTGA  1096
      |   |||||||||||||||||||||| |||||||||||||||||||
seq2  CTATACACTTTTTCTTAGCTATATTTTATTGAATGATTTCTCCTGA  1080