BAC Information

Click to search

BAC

Clone NameB6Ng01-012A23
Chromosome7 (Build37)
Map Location 108,809,380 - 108,963,551
singlet/doubletdoublet
Overlap geneClpb
Upstream genePlekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b
Downstream genePhox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012A23.bB6Ng01-012A23.g
ACCDH847254DH847255
length1,0691,134
definitionDH847254|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A23, 5' end.DH847255|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,809,380 - 108,810,465)(108,962,411 - 108,963,551)
sequence
gaattcattcatcagggaacagagcataaaactaagttggagaagtcaat
atgtcttagggagacgagttagacaaccggaaaagtagtgaaatctctga
gggctctctgctcctccaggacacaggtacatttattctaagtccatatg
aaaaatgaaaacataaatgggaagagtcaggagagccctggaaaccatca
gcaatggcagaggtgtggggttaaaaatactctaaagggggatgaccatg
tagctcaatggaagagtgtttccccagcgtgcacaaggtcctgagtttaa
tccccagcaccacaaacaaacaaacttactatgtaatactaaaaacaagg
ggctgaagggtgcacgtgacggcacacgtctttaatcccatacttggtag
gaagaagcaagcagcctgttctagaaattgaattccagggcatccaaggt
acacagaaaaaccctgtctcaaaaaaaaaacaaaacaaaaaaaaaaaaca
gacaaacaaataaatgggcctaaaaaaatgactcagtgtataagaacatg
ttctgttcttacaaaggaccaggcatgatttggttcccagcacccaaatg
gtagcttacagcctcctgaaactctgctacaggagatcccagagcctgtt
ttggcctccttgggctcctccatacacacagagcaaatatagacatgtat
aacacacacacacacacacacttcctcatcttttgtacaaatgcccacct
attcctaacagtgtaacactattacaaaaggaaaccaaatatggaagagg
ctagaaaggtcatctacacacccacatcatgaaaggagtttaaataatat
agcatttccatccagagcaacacaggctttgctgagggtccttggtgcaa
ttgggtaaattcaaaagagatcataaccagaaataaaatgtaaagtcatg
catgagtgtgtgatgcttcatgatctggcatgagaaatctcctaaatact
gtcagagattcatagaggtagagtatgtcaaagtgcaatgaagaaacacc
tgcagtttttttttaagtt
gaattcacagccatcctcctgtctcagcctatgtgctgggattacagctg
tgagcctccatgcccagctgtgttgtggtatatacccagaagtaggatgc
acttggtattgcatttccacctggtaacttcacagggtttttacttaaat
ttcttttcttttctttttttctgagacaaggtttcgctatgtattcctag
ctgccctggaacttgctctgtaggccaggctggcctgaaagtcacagaga
tctgccgcctctgctcctgagtgctgagattaaaagcatgtgttgcttgg
ccctgctttacttaaatttttaaaaaaagatttatttattatatatatat
gaatacaccattgctgtcttcagacacaccagaagagggcatcagatccc
attccagatggttgtgagccaccatgtggttgctgggaattgaactcagg
acctctggaatagcagtcttaactgctgagccatctctccagtcccattt
tttagaggtttgtttgttggtttgtttataagtatttttcctgaatgttt
atgcaatgtgtatatggttggtgcccttggagaccagaagagggcatcag
atcccctagaactagagttacagatggttgtgagctaccgtgtggggctg
ggaaccaaactggatcctctgcaagagcaaccagtgctcagaagcactga
gccctgtctgcagcccctgcagtgtctccactttttaaggaactgctgtg
ccatttacatccaaaccaatagctcccgagggctccagtttctcccatcc
tcacaaatacttgttttctctatttctccttactttttagattgtaagga
ttgagacttgacaggtctactgcttcaacaagttttctctcacttggaca
catattcatacctgaggggctcaaggcattacagtggatggaatgaatgc
tctcttaggtccttccatggctttccacgatcaactcaagtcctcaactc
tgggcccacaaacgtccttgagtaccagttgttccagcaccacatccttt
gtttgtttgttggtttgtttttgtttttcagcttctctgaaacaggtgaa
acagtattctctgcatacgcggctgcctggaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_108809380_108810465
seq2: B6Ng01-012A23.b_45_1113

seq1  GAATTCATTCATCAGGGAACAGAGCATAAAACTAAGTTGGAGAAGTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATCAGGGAACAGAGCATAAAACTAAGTTGGAGAAGTCAAT  50

seq1  ATGTCTTAGGGAGACGAGTTAGACAACCGGAAAAGTAGTGAAATCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAGGGAGACGAGTTAGACAACCGGAAAAGTAGTGAAATCTCTGA  100

seq1  GGGCTCTCTGCTCCTCCAGGACACAGGTACATTTATTCTAAGTCCATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTCTGCTCCTCCAGGACACAGGTACATTTATTCTAAGTCCATATG  150

seq1  AAAAATGAAAACATAAATGGGAAGAGTCAGGAGAGCCCTGGAAACCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAAACATAAATGGGAAGAGTCAGGAGAGCCCTGGAAACCATCA  200

seq1  GCAATGGCAGAGGTGTGGGGTTAAAAATACTCTAAAGGGGGATGACCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCAGAGGTGTGGGGTTAAAAATACTCTAAAGGGGGATGACCATG  250

seq1  TAGCTCAATGGAAGAGTGTTTCCCCAGCGTGCACAAGGTCCTGAGTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAATGGAAGAGTGTTTCCCCAGCGTGCACAAGGTCCTGAGTTTAA  300

seq1  TCCCCAGCACCACAAACAAACAAACTTACTATGTAATACTAAAAACAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCACCACAAACAAACAAACTTACTATGTAATACTAAAAACAAGG  350

seq1  GGCTGAAGGGTGCACGTGACGGCACACGTCTTTAATCCCATACTTGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGGGTGCACGTGACGGCACACGTCTTTAATCCCATACTTGGTAG  400

seq1  GAAGAAGCAAGCAGCCTGTTCTAGAAATTGAATTCCAGGGCATCCAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCAAGCAGCCTGTTCTAGAAATTGAATTCCAGGGCATCCAAGGT  450

seq1  ACACAGAAAAACCCTGTCTCAAAAAAAAAACAAAACAAAAAAAAAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAAAACCCTGTCTCAAAAAAAAAACAAAACAAAAAAAAAAAACA  500

seq1  GACAAACAAATAAATGGGCCTAAAAAAATGACTCAGTGTATAAGAACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAAATAAATGGGCCTAAAAAAATGACTCAGTGTATAAGAACATG  550

seq1  TTCTGTTCTTACAAAGGACCAGGCATGATTTGGTTCCCAGCACCCAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTTACAAAGGACCAGGCATGATTTGGTTCCCAGCACCCAAATG  600

seq1  GTAGCTTACAGCCTCCTGAAACTCTGCTACAGGAGATCCCAGAGCCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTACAGCCTCCTGAAACTCTGCTACAGGAGATCCCAGAGCCTGTT  650

seq1  TTGGCCTCCTTGGGCTCCTCCATACACACAGAGCAAATATAGACATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCCTTGGGCTCCTCCATACACACAGAGCAAATATAGACATGTAT  700

seq1  AACACACACACACACACACACTTCCTCATCTTTTGTACAAATGCCCACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACACACACACACACTTCCTCATCTTTTGTACAAATGCCCACCT  750

seq1  ATTCCTAACAGTGTAACACTATTACAAAAGGAAACCAAATATGGAAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAACAGTGTAACACTATTACAAAAGGAAACCAAATATGGAAGAGG  800

seq1  CTAG-AAGGTCATCTACACACCCACATCATGAAAGGAGTTTAAATAATAT  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGGTCATCTACACACCCACATCATGAAAGGAGTTTAAATAATAT  850

seq1  AGCATTTCCATCCAGAGCAACACAGGCTTTGCTGAGGGTCCTTGGTGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCCATCCAGAGCAACACAGGCTTTGCTGAGGGTCCTTGGTGCAA  900

seq1  TTGGGTAAATTCAAAAGAGATCAATAACCAGAAATAAAATGTAAAGTCAT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGGGTAAATTCAAAAGAGATC-ATAACCAGAAATAAAATGTAAAGTCAT  949

seq1  GCATGAGTGTGTGATTGCTTCATGATCTGGGCATGAGAAATCCTTCCTAA  999
      |||||||||||||| ||||||||||||| |||||||||||||  ||||||
seq2  GCATGAGTGTGTGA-TGCTTCATGATCT-GGCATGAGAAATC--TCCTAA  995

seq1  ATACTGTCAGAGATTCCATAGAAGTAGAGGTAATGTCAAAGTGGCAAATT  1049
      ||||||||||||||| |||||| ||||||   |||||||||| ||||  |
seq2  ATACTGTCAGAGATT-CATAGAGGTAGAG--TATGTCAAAGT-GCAA--T  1039

seq1  GAAAAGAAACACCTGCAAGGTTTTTTTTTTTTAAGTT  1086
      |  ||||||||||||||      ||||||||||||||
seq2  G--AAGAAACACCTGCA-----GTTTTTTTTTAAGTT  1069

seq1: chr7_108962411_108963551
seq2: B6Ng01-012A23.g_64_1197 (reverse)

seq1  AGTTCCAGGGCAGCCAGAGC-TATGCAGAGAAACCCTGTTTCACCTGTTT  49
      ||||||| |||||||   || ||||||||| ||  |||||||||||||||
seq2  AGTTCCA-GGCAGCC---GCGTATGCAGAG-AATACTGTTTCACCTGTTT  45

seq1  CAGAGAAACCCTGAAAAAACAAAAACAAAACAAACAAACAAACAAAAAGG  99
      |||||||   ||| |||||||||||| |||| |||||||||||  |||||
seq2  CAGAGAA--GCTG-AAAAACAAAAAC-AAACCAACAAACAAAC--AAAGG  89

seq1  ATGT-GTGCTGG-ACCACTGGTACTC-AGGACG-TTGTGGG-CCAGAG-T  143
      |||| ||||||| || |||||||||| |||||| ||||||| |||||| |
seq2  ATGTGGTGCTGGAACAACTGGTACTCAAGGACGTTTGTGGGCCCAGAGTT  139

seq1  GAGGACTTGAGTTTGATCGTGGAAAGCCATGGAAGGACCTAAGAGAGCAT  193
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTGAG-TTGATCGTGGAAAGCCATGGAAGGACCTAAGAGAGCAT  188

seq1  TCATTCCATCCCACTGTAATGCCTTGAGCCCCTCAGGTATGAATATGTGT  243
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCAT-CCACTGTAATGCCTTGAGCCCCTCAGGTATGAATATGTGT  237

seq1  CCAAGTGAGAGGAAAACTTGTTGAAGCAGTAGACCTGTCAAGTCTCAATC  293
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGAGA-GAAAACTTGTTGAAGCAGTAGACCTGTCAAGTCTCAATC  286

seq1  CTTACAATCTAAAAAGTAAGGAGAAATAGAGAAAACAAGTATTTGTGAGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATCTAAAAAGTAAGGAGAAATAGAGAAAACAAGTATTTGTGAGG  336

seq1  ATGGGAGAAACTGGAGCCCTCGGGAGCTATTGGTTTGGATGTAAATGGCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGAAACTGGAGCCCTCGGGAGCTATTGGTTTGGATGTAAATGGCA  386

seq1  CAGCAGTTCCTTAAAAAGTGGAGACACTGCAGGGGCTGCAGACAGGGCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTCCTTAAAAAGTGGAGACACTGCAGGGGCTGCAGACAGGGCTC  436

seq1  AGTGCTTCTGAGCACTGGTTGCTCTTGCAGAGGATCCAGTTTGGTTCCCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTCTGAGCACTGGTTGCTCTTGCAGAGGATCCAGTTTGGTTCCCA  486

seq1  GCCCCACACGGTAGCTCACAACCATCTGTAACTCTAGTTCTAGGGGATCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACACGGTAGCTCACAACCATCTGTAACTCTAGTTCTAGGGGATCT  536

seq1  GATGCCCTCTTCTGGTCTCCAAGGGCACCAACCATATACACATTGCATAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTCTTCTGGTCTCCAAGGGCACCAACCATATACACATTGCATAA  586

seq1  ACATTCAGGAAAAATACTTATAAACAAACCAACAAACAAACCTCTAAAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGGAAAAATACTTATAAACAAACCAACAAACAAACCTCTAAAAA  636

seq1  ATGGGACTGGAGAGATGGCTCAGCAGTTAAGACTGCTATTCCAGAGGTCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTGGAGAGATGGCTCAGCAGTTAAGACTGCTATTCCAGAGGTCC  686

seq1  TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGG  736

seq1  GATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAATGGTGTATTCAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAATGGTGTATTCAT  786

seq1  ATATATATAATAAATAAATCTTTTTTTAAAAATTTAAGTAAAGCAGGGCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAATAAATAAATCTTTTTTTAAAAATTTAAGTAAAGCAGGGCC  836

seq1  AAGCAACACATGCTTTTAATCTCAGCACTCAGGAGCAGAGGCGGCAGATC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACACATGCTTTTAATCTCAGCACTCAGGAGCAGAGGCGGCAGATC  886

seq1  TCTGTGACTTTCAGGCCAGCCTGGCCTACAGAGCAAGTTCCAGGGCAGCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACTTTCAGGCCAGCCTGGCCTACAGAGCAAGTTCCAGGGCAGCT  936

seq1  AGGAATACATAGCGAAACCTTGTCTCAGAAAAAAAGAAAAGAAAAGAAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATACATAGCGAAACCTTGTCTCAGAAAAAAAGAAAAGAAAAGAAAT  986

seq1  TTAAGTAAAAACCCTGTGAAGTTACCAGGTGGAAATGCAATACCAAGTGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAAAAACCCTGTGAAGTTACCAGGTGGAAATGCAATACCAAGTGC  1036

seq1  ATCCTACTTCTGGGTATATACCACAACACAGCTGGGCATGGAGGCTCACA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACTTCTGGGTATATACCACAACACAGCTGGGCATGGAGGCTCACA  1086

seq1  GCTGTAATCCCAGCACATAGGCTGAGACAGGAGGATGGCTGTGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAATCCCAGCACATAGGCTGAGACAGGAGGATGGCTGTGAATTC  1134