BAC Information

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BAC

Clone NameB6Ng01-012P06
Chromosome7 (Build37)
Map Location 20,101,733 - 20,289,082
singlet/doubletdoublet
Overlap geneNkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40
Upstream geneEG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a
Downstream genePvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012P06.bB6Ng01-012P06.g
ACCDH847897DH847898
length1,02782
definitionDH847897|Mus musculus domesticus DNA, BAC clone: B6Ng01-012P06, 5' end.DH847898|Mus musculus domesticus DNA, BAC clone: B6Ng01-012P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,288,049 - 20,289,082)(20,101,733 - 20,101,814)
sequence
gaattcagaggcttctacaggccaggcagctctgctgtcgacccatgcct
ccagtccctgcctcccagctccctgccctgcctttaagccagagtgcctc
agagctttgggctggtgatgtagaggggcctgcttctccatgttctgttg
aagggtgacttgcttctcttctccctaagtggtggcaagtatgtgctact
gctttgggggccatagcccaggagtcgcagggcaagggagaactgcataa
actgttgtgaggtttagcagacaagagccgctggggaggtgaggccaggc
ctggtcggaactggtgagtctgaccaccctctcctcctgcaggaatcctc
gtggcccactacctccagagcatcacaccgtgtctggccctgggtggaga
gctcgtctaccaccggcggccaggagaggagggcactgtcatgtctctag
ctgggaaatacacacgtgagcctggggcgcacttagggaggaggctgtgg
cctgtatctcagggttgagagggaagagagtggggtttccagatgcccac
atcccttgatacctagtcctcacccaactctgctctcctagtgaacaact
ggttggctacagtaacgctgggccaggcaggcatgcatgcgacgtattac
cacaaagccagtgaccaggtgagccggagggagcgcctagctgtgggtcc
caggctgggtttgctggtgcagttggtatgcccaggagtcctaatgggcc
actcacatgtgtgccgggccctctctcccccagctgcagtgggtgtggag
tttgaggccagcaccaggatgcaggacaccagtgcctcctttgggtatca
gctggacctgcccaagccaacttcccttttaaggtaaggaaggcctcagc
ttctctcctggggaacaggccagatagactcagctgtctgtggtagagtc
catgggaatagggaggtgacagtgcttggtggagtggggcgggactctgt
gcagttctaattactcttgggtagctt
agaccgaggtggctgagaagtaacaagggctgctggctcgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20288049_20289082
seq2: B6Ng01-012P06.b_45_1071 (reverse)

seq1  AAGCCACCC-AGAGTAATTTGGAGCTGCACAGAGTCCCCGCCCACTCCAC  49
      |||| |||| ||||||| || || ||||||||||||||  ||||||||||
seq2  AAGCTACCCAAGAGTAA-TTAGAACTGCACAGAGTCCCGCCCCACTCCAC  49

seq1  C-AGCACATGTTCAACCTCCCTATTTCCCATGGACTCTACCACAGACAGC  98
      | ||||| |||   ||||||||| ||||||||||||||||||||||||||
seq2  CAAGCAC-TGT--CACCTCCCTA-TTCCCATGGACTCTACCACAGACAGC  95

seq1  TGAGTCTTATCTGGCCTGTTCCCCAGGAGGGAAGCTGAGGCCTTCCTTAC  148
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAGTC-TATCTGGCCTGTTCCCCAGGAGAGAAGCTGAGGCCTTCCTTAC  144

seq1  CTTTAAAAAGGAAGTTGGCCTTGGGCAGGTCCAGCTGATACCCAAAGGAG  198
      | |||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  C-TTAAAAGGGAAGTTGG-CTTGGGCAGGTCCAGCTGATACCCAAAGGAG  192

seq1  GCACTGGTGTCCTGCATCCTGGTGCTGGCCTCAAACTCCACACCCACCTG  248
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCACTGGTGTCCTGCATCCTGGTGCTGGCCTCAAACTCCACACCCA-CTG  241

seq1  CAGCTGGGGGAGAGAGGGCCCGGCACACATGTGAGTGGCCCATTAGGACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGGGAGAGAGGGCCCGGCACACATGTGAGTGGCCCATTAGGACT  291

seq1  CCTGGGCATACCAACTGCACCAGCAAACCCAGCCTGGGACCCACAGCTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCATACCAACTGCACCAGCAAACCCAGCCTGGGACCCACAGCTAG  341

seq1  GCGCTCCCTCCGGCTCACCTGGTCACTGGCTTTGTGGTAATACGTCGCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCCCTCCGGCTCACCTGGTCACTGGCTTTGTGGTAATACGTCGCAT  391

seq1  GCATGCCTGCCTGGCCCAGCGTTACTGTAGCCAACCAGTTGTTCACTAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTGCCTGGCCCAGCGTTACTGTAGCCAACCAGTTGTTCACTAGG  441

seq1  AGAGCAGAGTTGGGTGAGGACTAGGTATCAAGGGATGTGGGCATCTGGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGTTGGGTGAGGACTAGGTATCAAGGGATGTGGGCATCTGGAA  491

seq1  ACCCCACTCTCTTCCCTCTCAACCCTGAGATACAGGCCACAGCCTCCTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACTCTCTTCCCTCTCAACCCTGAGATACAGGCCACAGCCTCCTCC  541

seq1  CTAAGTGCGCCCCAGGCTCACGTGTGTATTTCCCAGCTAGAGACATGACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCGCCCCAGGCTCACGTGTGTATTTCCCAGCTAGAGACATGACA  591

seq1  GTGCCCTCCTCTCCTGGCCGCCGGTGGTAGACGAGCTCTCCACCCAGGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTCCTCTCCTGGCCGCCGGTGGTAGACGAGCTCTCCACCCAGGGC  641

seq1  CAGACACGGTGTGATGCTCTGGAGGTAGTGGGCCACGAGGATTCCTGCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACGGTGTGATGCTCTGGAGGTAGTGGGCCACGAGGATTCCTGCAG  691

seq1  GAGGAGAGGGTGGTCAGACTCACCAGTTCCGACCAGGCCTGGCCTCACCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGGTGGTCAGACTCACCAGTTCCGACCAGGCCTGGCCTCACCT  741

seq1  CCCCAGCGGCTCTTGTCTGCTAAACCTCACAACAGTTTATGCAGTTCTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCGGCTCTTGTCTGCTAAACCTCACAACAGTTTATGCAGTTCTCC  791

seq1  CTTGCCCTGCGACTCCTGGGCTATGGCCCCCAAAGCAGTAGCACATACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTGCGACTCCTGGGCTATGGCCCCCAAAGCAGTAGCACATACTT  841

seq1  GCCACCACTTAGGGAGAAGAGAAGCAAGTCACCCTTCAACAGAACATGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACTTAGGGAGAAGAGAAGCAAGTCACCCTTCAACAGAACATGGA  891

seq1  GAAGCAGGCCCCTCTACATCACCAGCCCAAAGCTCTGAGGCACTCTGGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGCCCCTCTACATCACCAGCCCAAAGCTCTGAGGCACTCTGGCT  941

seq1  TAAAGGCAGGGCAGGGAGCTGGGAGGCAGGGACTGGAGGCATGGGTCGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCAGGGCAGGGAGCTGGGAGGCAGGGACTGGAGGCATGGGTCGAC  991

seq1  AGCAGAGCTGCCTGGCCTGTAGAAGCCTCTGAATTC  1034
      ||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCTGCCTGGCCTGTAGAAGCCTCTGAATTC  1027

seq1: chr7_20101733_20101814
seq2: B6Ng01-012P06.g_71_152

seq1  AGACCGAGGTGGCTGAGAAGTAACAAGGGCTGCTGGCTCGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGAGGTGGCTGAGAAGTAACAAGGGCTGCTGGCTCGTGTGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  82
      ||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  82