BAC Information

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BAC

Clone NameB6Ng01-013A07
Chromosome7 (Build37)
Map Location 145,964,299 - 146,102,767
singlet/doubletdoublet
Overlap geneMapk1ip1, Ppp2r2d, Bnip3
Upstream geneLOC435235, Tcerg1l, LOC100043290
Downstream geneEG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013A07.bB6Ng01-013A07.g
ACCDH847945DH847946
length1,107684
definitionDH847945|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A07, 5' end.DH847946|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,101,652 - 146,102,767)(145,964,299 - 145,964,984)
sequence
gaattcccagacccttctctttccctttgtcattcaggcacacatatcta
tgcaagctggggattgaacccttggatttgctggacacggaggctatcac
caagcaggaccacagctgtttcttgctggacacagagtctgtcaccaagc
aggaccacagctgtttttttcttgctaggtgtggtagtatgtctgtaatc
ccagcacctggggggttgagacaaaggtttggtgtctgtagcagagaatc
tgtttattgttctgaaggccctaggctagagctccgagcactgtaagaaa
gcaagctttcagttaagagtggtggaaccactgggaagctggggcaggaa
aaaaagtttaagaccagagtaggttacaaagcgaatctgtctaaaaaaag
acatcagattcagtctggtgacatggctcagctgcagtgaacttgcatgt
gcaaggccctcgtataaccttagcactccaaacaaaacaaacggaaatca
aggctgcatagctataatcccagctctcaggaggcgaaagcagtaggatc
ggaaattcaaggttagcttttgctacacagccaattcaaagccagcctcg
gttatgacattgtctgggaaaaaacaaaacaccaaatgaagctgcttcta
gtgacctgacccactgctactaagatagcttcttttgaggttcacaagcc
ccttctctatcccagaactgtatcaagagggaattccaacctccaagtac
agagaagctactgggtaggttacagggaggatgcagaatcctcaaaactg
gccctccaaaggtctctccaaccgttcctgtccaaaaatgccgtcctttc
tcgcatgcagcataccacagcactacccaactcgccattgatgctgcagt
agaatactggcaaattttttgtttgctttgtgtaacagcttcatacagtg
cagcccagcctggccacgaacagggctgggactagagttatacataagca
ctcccggactgcatttttctaagatgcacctaaaaaactatcctgttagc
gtgcataagacagccagacattgtgtgctccattgctggcgctcgcagtt
tcggagg
gaattctccaggctaatggggcaaagacagagggggactgtcaacaagat
ggattgacagtatgactggagacacaccaaagtcatttggtcacagctga
gcaataccctgccacatctggcacatcaagctgtgctcacagatgaaaga
tttggctcctggtttcatcccatgttctagaaacagaggctctgaacatc
ttcatggctttaagaactgtagaaatcatctctctctctctctctctctc
cctctctctctctctctctctctctctctcatactcattctctctccctc
taatctcgtctcttctgaccctctccgtccctcccatcattctctctctc
ttcttccctccctctttccctcttaacttctcagtaaagggcatcttcac
agagagtggtcccctcaaattagcatctcataaatcaaactcatgcctgg
gcacatctccacccccgtgaggttgggtgtataagacagagatgcacaca
gatctgctcaaaggtgtagggaatgtaggtggttgttgcttgggggaaag
atccgctaagcagcggaactgattccctggacctcatggatatgtccagc
cgagagaaggaagtctttaccccggcatgttctcactaggttaccctcag
gcacatgtctaccactctctagcagaggggttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_146101652_146102767
seq2: B6Ng01-013A07.b_47_1153 (reverse)

seq1  CCTCCGGAACCTGCGAGCGCCAGCAATGGGAGCACACATGGTCTCGCTGT  50
      ||||| ||| ||||||||||||||||| ||||||||||  |||| |||||
seq2  CCTCC-GAAACTGCGAGCGCCAGCAAT-GGAGCACACAATGTCTGGCTGT  48

seq1  CTCTATGCACGCTTACA-GATAGTTTTTTAGGTTGCATCTTTAAGAAAAA  99
      || |||||||||| ||| |||||||||||||| ||||||||  |||||||
seq2  CT-TATGCACGCTAACAGGATAGTTTTTTAGG-TGCATCTT--AGAAAAA  94

seq1  TGCAGTCCGGGAGTGCTTATGTATAACTCTAGTCCCAGCCCTGGTTCGTG  149
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCAGTCCGGGAGTGCTTATGTATAACTCTAGTCCCAGCCCT-GTTCGTG  143

seq1  GCCAGGCTGGGCTGCACTGTATGAAGCTGTTTACAACAAAGCAAAACAAA  199
      ||||||||||||||||||||||||||||| |||| ||||||| |||||||
seq2  GCCAGGCTGGGCTGCACTGTATGAAGCTG-TTAC-ACAAAGC-AAACAAA  190

seq1  AAATTTGCCAGTATTCTACTGCAGCATCAATGGCGAGTTGGGTAGTGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCCAGTATTCTACTGCAGCATCAATGGCGAGTTGGGTAGTGCTG  240

seq1  TGGTATGCTGCATGCGAGAAAGGACGGCATTTTTGGACAGGAACGGTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGCTGCATGCGAGAAAGGACGGCATTTTTGGACAGGAACGGTTGG  290

seq1  AGAGACCTTTGGAGGGCCAGTTTTGAGGATTCTGCATCCTCCCTGTAACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTTTGGAGGGCCAGTTTTGAGGATTCTGCATCCTCCCTGTAACC  340

seq1  TACCCAGTAGCTTCTCTGTACTTGGAGGTTGGAATTCCCTCTTGATACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTAGCTTCTCTGTACTTGGAGGTTGGAATTCCCTCTTGATACAG  390

seq1  TTCTGGGATAGAGAAGGGGCTTGTGAACCTCAAAAGAAGCTATCTTAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGATAGAGAAGGGGCTTGTGAACCTCAAAAGAAGCTATCTTAGTA  440

seq1  GCAGTGGGTCAGGTCACTAGAAGCAGCTTCATTTGGTGTTTTGTTTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGTCAGGTCACTAGAAGCAGCTTCATTTGGTGTTTTGTTTTTTC  490

seq1  CCAGACAATGTCATAACCGAGGCTGGCTTTGAATTGGCTGTGTAGCAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAATGTCATAACCGAGGCTGGCTTTGAATTGGCTGTGTAGCAAAA  540

seq1  GCTAACCTTGAATTTCCGATCCTACTGCTTTCGCCTCCTGAGAGCTGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCTTGAATTTCCGATCCTACTGCTTTCGCCTCCTGAGAGCTGGGA  590

seq1  TTATAGCTATGCAGCCTTGATTTCCGTTTGTTTTGTTTGGAGTGCTAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTATGCAGCCTTGATTTCCGTTTGTTTTGTTTGGAGTGCTAAGG  640

seq1  TTATACGAGGGCCTTGCACATGCAAGTTCACTGCAGCTGAGCCATGTCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACGAGGGCCTTGCACATGCAAGTTCACTGCAGCTGAGCCATGTCAC  690

seq1  CAGACTGAATCTGATGTCTTTTTTTAGACAGATTCGCTTTGTAACCTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAATCTGATGTCTTTTTTTAGACAGATTCGCTTTGTAACCTACT  740

seq1  CTGGTCTTAAACTTTTTTTCCTGCCCCAGCTTCCCAGTGGTTCCACCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTAAACTTTTTTTCCTGCCCCAGCTTCCCAGTGGTTCCACCACT  790

seq1  CTTAACTGAAAGCTTGCTTTCTTACAGTGCTCGGAGCTCTAGCCTAGGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGAAAGCTTGCTTTCTTACAGTGCTCGGAGCTCTAGCCTAGGGC  840

seq1  CTTCAGAACAATAAACAGATTCTCTGCTACAGACACCAAACCTTTGTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAACAATAAACAGATTCTCTGCTACAGACACCAAACCTTTGTCTC  890

seq1  AACCCCCCAGGTGCTGGGATTACAGACATACTACCACACCTAGCAAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCAGGTGCTGGGATTACAGACATACTACCACACCTAGCAAGAAA  940

seq1  AAAACAGCTGTGGTCCTGCTTGGTGACAGACTCTGTGTCCAGCAAGAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCTGTGGTCCTGCTTGGTGACAGACTCTGTGTCCAGCAAGAAAC  990

seq1  AGCTGTGGTCCTGCTTGGTGATAGCCTCCGTGTCCAGCAAATCCAAGGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGTCCTGCTTGGTGATAGCCTCCGTGTCCAGCAAATCCAAGGGT  1040

seq1  TCAATCCCCAGCTTGCATAGATATGTGTGCCTGAATGACAAAGGGAAAGA  1099
      ||||||||||||||||||||||||||||||||||                
seq2  TCAATCCCCAGCTTGCATAGATATGTGTGCCTGANNNNNNNNNNNNNNNN  1090

seq1  GAAGGGTCTGGGAATTC  1116
           ||||||||||||
seq2  NNNNNGTCTGGGAATTC  1107

seq1: chr7_145964299_145964984
seq2: B6Ng01-013A07.g_67_750

seq1  GAATTCTCCAGGCTAATGGGGCAAAGACAGAGGGGGACTGTCAACAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGCTAATGGGGCAAAGACAGAGGGGGACTGTCAACAAGAT  50

seq1  GGATTGACAGTATGACTGGAGACACACCAAAGTCATTTGGTCACAGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGACAGTATGACTGGAGACACACCAAAGTCATTTGGTCACAGCTGA  100

seq1  GCAATACCCTGCCACATCTGGCACATCAAGCTGTGCTCACAGATGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACCCTGCCACATCTGGCACATCAAGCTGTGCTCACAGATGAAAGA  150

seq1  TTTGGCTCCTGGTTTCATCCCATGTTCTAGAAACAGAGGCTCTGAACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCCTGGTTTCATCCCATGTTCTAGAAACAGAGGCTCTGAACATC  200

seq1  TTCATGGCTTTAAGAACTGTAGAAATCATCTCTCTCTCTCTCTCTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCTTTAAGAACTGTAGAAATCATCTCTCTCTCTCTCTCTCTCTC  250

seq1  CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACATTCTCTCTCCCTC  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACTCATTCTCTCTCCCTC  300

seq1  TAATCTCGTCTCTTCTGACCCTCTCCGTCCCTCCCATCATTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCGTCTCTTCTGACCCTCTCCGTCCCTCCCATCATTCTCTCTCTC  350

seq1  TTCTTCCCTCCCTCTTTCCCTCTTAACTTCTCAGTAAAGGGCATCTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCTCCCTCTTTCCCTCTTAACTTCTCAGTAAAGGGCATCTTCAC  400

seq1  AGAGAGTGGTCCCCTCAAATTAGCATCTCATAAATCAAACTCATGCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGGTCCCCTCAAATTAGCATCTCATAAATCAAACTCATGCCTGG  450

seq1  GCACATCTCCACCCCCGTGAGGTTGGGTGTATAAGACAGAGATGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTCCACCCCCGTGAGGTTGGGTGTATAAGACAGAGATGCACACA  500

seq1  GATCTGCTCAAAGGTGTAGGGAATGTAGGTGGTTGTTGCTTGGGGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTCAAAGGTGTAGGGAATGTAGGTGGTTGTTGCTTGGGGGAAAG  550

seq1  ATCAGCTAAGCAGCAAAACTGATTCCCAGGTCCTCAGGGATTTGTCCAGC  600
      ||| ||||||||||  ||||||||||| || ||||| |||| ||||||||
seq2  ATCCGCTAAGCAGCGGAACTGATTCCCTGGACCTCATGGATATGTCCAGC  600

seq1  CG-GAGAAGGAAGTCTTTACACAGGCATGTTCTCACTAGGTTACACTCAG  649
      || ||||||||||||||||| | ||||||||||||||||||||| |||||
seq2  CGAGAGAAGGAAGTCTTTACCCCGGCATGTTCTCACTAGGTTACCCTCAG  650

seq1  GGACAAGGTCTACCAGTCTCAGAGGCAGAGGGGTTGC  686
      | || | |||||||| ||||    |||||||||||||
seq2  GCAC-ATGTCTACCACTCTC--TAGCAGAGGGGTTGC  684