BAC Information

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BAC

Clone NameB6Ng01-014F01
Chromosome7 (Build37)
Map Location 11,234,726 - 11,353,223
singlet/doubletdoublet
Overlap geneEG628596, Nlrp4b, LOC333184, V1re13
Upstream geneLOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1
Downstream geneBQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014F01.bB6Ng01-014F01.g
ACCDH848896DH848897
length1,2311,061
definitionDH848896|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F01, 5' end.DH848897|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,234,726 - 11,235,952)(11,352,146 - 11,353,223)
sequence
gaattcttcccccatatttgtcagcaaatgttgatatcattatgatacgt
agtgatatttaatactacactctatttatcagtgctgagttttcaatgtt
caaggtgtttctctgattaaacacatcaatcaaaaatttgtttaaaatct
atcacatgcactaattttttgataatttaatcagttgatttaatgaagac
tccattcacatatactgatttatatactacagaaagtttggtttgccaat
tttacttagagattccttatatattacaaattattgatgagtgtgaattc
tgtgagaacaactatggtcaattgttttaacttttgaggacacaaaaaca
aactgctcttaccaaagatcaggcacttaatgacagaccaaagaaattgt
tctatccatgtttagtttggtgaatcaatgactttcactggggttactta
actatagcatgggtgaaaagttatgttgagacattttatgcattgacatt
aaccaatggcgttttcatctagcagaaattcatcagttcattcaattcat
caatgtcagaggaaagatatacttccacccaagtctatctagcaatggaa
gattctcaaatgtgagatggaaagaaatgttctttcagggtgacatcaac
tccctccgaaggctgtcatggctaccttctataatatcatcttgaccaca
aggggcagcatatcaacatgtcagtcacactgtattagggactcagtcct
gcttggagacaggctctttgtcccactggctactgagatcttatctgcca
ccacagaaacatcacagaatttgaatttgctttcataaataagtcttgat
ttcttctctcagtcctgaaaaacctcaaacctcaaaatctaatctatgcc
ttatatgtaatcctactggattatgttgcaggatatttggtcacattgtg
tatccctatttgatcacattgtgtatctctctgatgccatgtgtttgaga
gtcatgatgttgactggtggttcgatggtccttatcctgctgaaacccaa
gcaaggtccaagacatcttgccgaagttctttcctctgaaaactaagaag
ctacacaaaaccatcctggacctatgagacgagaatttagctcttttata
tattctcccacttaagagtgtttaacctttgaaatggaatactagtggcc
tgggacccatggccaggtgacaagaactgca
gaattctctaaaacataaaagtcaacaaaaagtgacataaatggatgagt
cctttcaaagctttaacctcaaaaagttgatgcacacagacctatgacct
ctccagtctcccataccacttcatacttggctatttttgaatgaaaatat
ggacaggaccacaccaaggtatcactgacaagaacttttttatttagata
aagacagaatatccagaggcatctggaagagtacaggtcagtgagagaaa
gtaatatattgatgaggccagtacacataactgggctatgagaagataaa
ggaatggagataaagagaagaagtgaaggcagcagaaagaggggaaaaaa
aagagaaaaaaaaaaccacaaagtgatatgagaagaatgaagaaaaaaaa
cctctgagcaaaaccaagatcacaacagggaagagaagctgaggggaact
aaatgaaggtctggttctagagagatttatgagcctggagtgaaaagtac
tgagaggagctagaacactgtaatacgtactagcaatgctgtgagattct
aattcagcatcctctctgatatgttaatagtctcctctaataggttaata
gttattaatagtaaatagttagccatttgtctgggataattttgggaccc
aaaaatcatgacatgttgaaattgtcttggatactgggtattagggaaag
gctctctaggggcaagtccatgcaacttgattatactttactactaatga
agatctatttcttctgcatgccattctgccatatactttgtgctccaggg
aatgacaaggaagtccaaattctgattactaattagttctttgagtttct
ctagtaattttctctctttttcttgtttgttttgttctgacaggatttag
acaatatgtttaaatgttattcagacctttgtcaagatgctgtaatcatg
gatctggagatgactttaaatcacatcttcctcggaaagatccagagatc
atgatcttctagtggagggagatgtcctcattaccattcaagagaactca
tgttccatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11234726_11235952
seq2: B6Ng01-014F01.b_45_1275

seq1  GAATTCTTCCCCCATATTTGTCAGCAAATGTTGATATCATTATGATACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCCATATTTGTCAGCAAATGTTGATATCATTATGATACGT  50

seq1  AGTGATATTTAATACTACACTCTATTTATCAGTGCTGAGTTTTCAATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATTTAATACTACACTCTATTTATCAGTGCTGAGTTTTCAATGTT  100

seq1  CAAGGTGTTTCTCTGATTAAACACATCAATCAAAAATTTGTTTAAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGTTTCTCTGATTAAACACATCAATCAAAAATTTGTTTAAAATCT  150

seq1  ATCACATGCACTAATTTTTTGATAATTTAATCAGTTGATTTAATGAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATGCACTAATTTTTTGATAATTTAATCAGTTGATTTAATGAAGAC  200

seq1  TCCATTCACATATACTGATTTATATACTACAGAAAGTTTGGTTTGCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCACATATACTGATTTATATACTACAGAAAGTTTGGTTTGCCAAT  250

seq1  TTTACTTAGAGATTCCTTATATATTACAAATTATTGATGAGTGTGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAGAGATTCCTTATATATTACAAATTATTGATGAGTGTGAATTC  300

seq1  TGTGAGAACAACTATGGTCAATTGTTTTAACTTTTGAGGACACAAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAACAACTATGGTCAATTGTTTTAACTTTTGAGGACACAAAAACA  350

seq1  AACTGCTCTTACCAAAGATCAGGCACTTAATGACAGACCAAAGAAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCTTACCAAAGATCAGGCACTTAATGACAGACCAAAGAAATTGT  400

seq1  TCTATCCATGTTTAGTTTGGTGAATCAATGACTTTCACTGGGGTTACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCATGTTTAGTTTGGTGAATCAATGACTTTCACTGGGGTTACTTA  450

seq1  ACTATAGCATGGGTGAAAAGTTATGTTGAGACATTTTATGCATTGACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGCATGGGTGAAAAGTTATGTTGAGACATTTTATGCATTGACATT  500

seq1  AACCAATGGCGTTTTCATCTAGCAGAAATTCATCAGTTCATTCAATTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGGCGTTTTCATCTAGCAGAAATTCATCAGTTCATTCAATTCAT  550

seq1  CAATGTCAGAGGAAAGATATACTTCCACCCAAGTCTATCTAGCAATGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCAGAGGAAAGATATACTTCCACCCAAGTCTATCTAGCAATGGAA  600

seq1  GATTCTCAAATGTGAGATGGAAAGAAATGTTCTTTCAGGGTGACATCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCAAATGTGAGATGGAAAGAAATGTTCTTTCAGGGTGACATCAAC  650

seq1  TCCCTCCGAAGGCTGTCATGGCTACCTTCTATAATATCATCTTGACCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCGAAGGCTGTCATGGCTACCTTCTATAATATCATCTTGACCACA  700

seq1  AGGGGCAGCATATCAACATGTCAGTCACACTGTATTAGGGACTCAGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGCATATCAACATGTCAGTCACACTGTATTAGGGACTCAGTCCT  750

seq1  GCTTGGAGACAGGCTCTTTGTCCCACTGGCTACTGAGATCTTATCTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGACAGGCTCTTTGTCCCACTGGCTACTGAGATCTTATCTGCCA  800

seq1  CCACAGAAACATCACAGAATTTGAATTTGCTTTCATAAATAAGTCTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAACATCACAGAATTTGAATTTGCTTTCATAAATAAGTCTTGAT  850

seq1  TTCTTCTCTCAGTCCTGAAAAACCTCAAACCTCAAAATCTAATCTATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTCAGTCCTGAAAAACCTCAAACCTCAAAATCTAATCTATGCC  900

seq1  TTATATGTAATCCTACTGGATTATGTTGCAGGATATTTGGTCACATTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTAATCCTACTGGATTATGTTGCAGGATATTTGGTCACATTGTG  950

seq1  TATCCCTATTTGATCACATTGTGTATCTCTCTGATGCCATGTGTTTGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTATTTGATCACATTGTGTATCTCTCTGATGCCATGTGTTTGAGA  1000

seq1  GTCATGATGTTGACTGGTGGTTCGATGGTCCTTATCCTGCTGAAACCCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGATGTTGACTGGTGGTTCGATGGTCCTTATCCTGCTGAAACCCAA  1050

seq1  GCAGGGTCCAAGACATC-TGCAG-AGTTCTAT-CTCTG-AGACTA--GAG  1094
      ||| ||||||||||||| ||| | |||||| | ||||| | ||||   ||
seq2  GCAAGGTCCAAGACATCTTGCCGAAGTTCTTTCCTCTGAAAACTAAGAAG  1100

seq1  CTACAC-AAACCATCCTTGACCTATGAGCAG---ATTTAGCTCTTTTATA  1140
      |||||| |||||||||| ||||||||||  |   ||||||||||||||||
seq2  CTACACAAAACCATCCTGGACCTATGAGACGAGAATTTAGCTCTTTTATA  1150

seq1  TA-TCTCCCATCTTAAAGATGTGTTTAACTTTGGTAAATGGAATAACTAG  1189
      || ||||||| ||| |||| ||||||||| || | ||||||||| |||||
seq2  TATTCTCCCA-CTT-AAGA-GTGTTTAACCTTTG-AAATGGAAT-ACTAG  1195

seq1  TTGGCTGGCTACTCATTGCAAGTGTAGCAAGAACTGCA  1227
      | | ||||  || ||| || || ||  |||||||||||
seq2  TGGCCTGG-GACCCATGGCCAG-GTGACAAGAACTGCA  1231

seq1: chr7_11352146_11353223
seq2: B6Ng01-014F01.g_65_1125 (reverse)

seq1  GCTATGAGACATGAGTTTCTTTTGAAATGGTAATGA-GACATTCTCCCTC  49
      ||||||  ||||||| |||| ||| ||||||||||| |||| ||||||||
seq2  GCTATGGAACATGAG-TTCTCTTG-AATGGTAATGAGGACA-TCTCCCTC  47

seq1  ACTTAGAGGTTCATGATCTCTTGGGATTCTTTCCGA-GAAGATTGTTGAT  98
         |||| | |||||||||||  ||| ||||||||| ||||||   ||| 
seq2  CACTAGAAGATCATGATCTCT--GGA-TCTTTCCGAGGAAGAT--GTGA-  91

seq1  TTTAAAGTCATCTCCAGATCCATGATTACAGCATCTTGACAAAGGTCTGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTCATCTCCAGATCCATGATTACAGCATCTTGACAAAGGTCTGA  141

seq1  AGTAACATTTAAACATATTGTTCCTAAATTCCTGTCAGAAACAAAAACAA  198
      | |||||||||||||||||||  ||||| ||||||||| ||||||   | 
seq2  A-TAACATTTAAACATATTGT--CTAAA-TCCTGTCAG-AACAAA---AC  183

seq1  AAACAAGAAAAAAGAAGAGAAAATTACTAGAGAAACTCAAAGAACTAATT  248
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  AAACAAGAAAAA--GAGAGAAAATTACTAGAGAAACTCAAAGAACTAATT  231

seq1  AGTAATCAGAATTTGGACTTCCTTGTCATTCCCTGGAGCACAAAGTATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCAGAATTTGGACTTCCTTGTCATTCCCTGGAGCACAAAGTATAT  281

seq1  GGCAGAATGGCATGCAGAAGAAATAGATCTTCATTAGTAGTAAAGTATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATGGCATGCAGAAGAAATAGATCTTCATTAGTAGTAAAGTATAA  331

seq1  TCAAGTTGCATGGACTTGCCCCTAGAGAGCCTTTCCCTAATACCCAGTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGCATGGACTTGCCCCTAGAGAGCCTTTCCCTAATACCCAGTAT  381

seq1  CCAAGACAATTTCAACATGTCATGATTTTTGGGTCCCAAAATTATCCCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAATTTCAACATGTCATGATTTTTGGGTCCCAAAATTATCCCAG  431

seq1  ACAAATGGCTAACTATTTACTATTAATAACTATTAACCTATTAGAGGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGCTAACTATTTACTATTAATAACTATTAACCTATTAGAGGAGA  481

seq1  CTATTAACATATCAGAGAGGATGCTGAATTAGAATCTCACAGCATTGCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACATATCAGAGAGGATGCTGAATTAGAATCTCACAGCATTGCTA  531

seq1  GTACGTATTACAGTGTTCTAGCTCCTCTCAGTACTTTTCACTCCAGGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTATTACAGTGTTCTAGCTCCTCTCAGTACTTTTCACTCCAGGCTC  581

seq1  ATAAATCTCTCTAGAACCAGACCTTCATTTAGTTCCCCTCAGCTTCTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTCTCTAGAACCAGACCTTCATTTAGTTCCCCTCAGCTTCTCTT  631

seq1  CCCTGTTGTGATCTTGGTTTTGCTCAGAGGTTTTTTTTCTTCATTCTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTGTGATCTTGGTTTTGCTCAGAGGTTTTTTTTCTTCATTCTTCT  681

seq1  CATATCACTTTGTGGTTTTTTTTTTCTCTTTTTTTTCCCCTCTTTCTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACTTTGTGGTTTTTTTTTTCTCTTTTTTTTCCCCTCTTTCTGCT  731

seq1  GCCTTCACTTCTTCTCTTTATCTCCATTCCTTTATCTTCTCATAGCCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCACTTCTTCTCTTTATCTCCATTCCTTTATCTTCTCATAGCCCAG  781

seq1  TTATGTGTACTGGCCTCATCAATATATTACTTTCTCTCACTGACCTGTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTACTGGCCTCATCAATATATTACTTTCTCTCACTGACCTGTAC  831

seq1  TCTTCCAGATGCCTCTGGATATTCTGTCTTTATCTAAATAAAAAAGTTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGATGCCTCTGGATATTCTGTCTTTATCTAAATAAAAAAGTTCT  881

seq1  TGTCAGTGATACCTTGGTGTGGTCCTGTCCATATTTTCATTCAAAAATAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTGATACCTTGGTGTGGTCCTGTCCATATTTTCATTCAAAAATAG  931

seq1  CCAAGTATGAAGTGGTATGGGAGACTGGAGAGGTCATAGGTCTGTGTGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTATGAAGTGGTATGGGAGACTGGAGAGGTCATAGGTCTGTGTGCA  981

seq1  TCAACTTTTTGAGGTTAAAGCTTTGAAAGGACTCATCCATTTATGTCACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTTTGAGGTTAAAGCTTTGAAAGGACTCATCCATTTATGTCACT  1031

seq1  TTTTGTTGACTTTTATGTTTTAGAGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  TTTTGTTGACTTTTATGTTTTAGAGAATTC  1061