BAC Information

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BAC

Clone NameB6Ng01-015D20
Chromosome14 (Build37)7 (Build37)
Map Location 85,752,224 - 85,753,36925,294,041 - 25,294,319
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603, LOC100043301, EG629815, LOC100043306, LOC100043778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015D20.bB6Ng01-015D20.g
ACCDH849553DH849554
length1,138503
definitionDH849553|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D20, 5' end.DH849554|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,752,224 - 85,753,369)(25,294,041 - 25,294,319)
sequence
gaattcatgtaaagaagtaagacatctctcatatctgcaatagcactttt
atttaagttgtttgttttgtaagccaacaggacataaaataaccttataa
taaaatccccaggaaaatcatatgagatgcctggcctcaagcattaacat
cacatagaccatcaagttatatggagttgcagaagagagtcttttagtgt
acaaacatcctggtggaaacagctcatctctgtttgtattgagaccatgg
cacaaaataaaacctcttagtctcagcattcatctttaaagctaggacaa
tggaggtagctctatctgaggctgtattaaatatgataaagtcagtatgc
ctggcaaatataaagcagttgaaaattatagattccaattgcatatgtta
ccatatttattaatattaggaaacatagtctataacttaattttaatggg
tggtgaattgcaaacatgtcattagtttttgacacttgctttatcaaatg
gtgcgtcatctcattaaatataggcatttcacttgtgtgtatcttacaat
agaatgtggcagcaggtgctaaatgatgtgtgagtctttcatgagtggtg
tctgccttaattcccttcagacccacttcttcatgatacacatgcatcta
taggtctgaagcaacatgtaggaagcctttgatactgccatgttgaagga
accacccacagtttagaggtgaccaagaagaaagacctgctccaagaacc
agctgtttgatatttctaaacaatagccaattctattcaaatatatgatt
cttggcccacatctgtcatcaccaaggtcagagcatggagctttagaact
gctttagaacgctacttagggaccatcaatagaatagtgtcttgtgtatc
ttctcatcatttatgcatctccctttcagtaccacagtaaccttttcttt
ctgtgaactcaataggacattcatttttatgtgtagtactgtatttggta
tggggtctattattacggactcagcccatggagattgaagaaatggggat
tcatgttcagtacataaggggtgatatgagtaaagttggttttttaattg
gaagcatgttttagactgtggatatctggatgttagac
caggacagccagggctatacagagaaaccctgtctcaaaaaacaagcaaa
caaacaaacaaacaaaattattgctttaaacttacaattaacgtatggaa
ctagtaacagatattaaagttacttgtcttactggaaagacatgtacata
attcttctgttcttccttaagatgtgtcaatctatggcatgaaatattgc
cttaaatctaatatgaacttattgagatgtaaaagtatttttaaaatgta
attaattatcctgctgtaacggttctaccttgttgtacgaggtgattttt
agagaaattataaacactgagaacagaaataaaagtttcttagagcttac
ttgtcagagctttagatgcagcaaatgtatgtatgtttatgtgtttgtat
gcattatgtatatatatgtatgtatgtaaagtggttggagcttttctttc
ttttctttatccaaaatgcatgtttttctgcagacctgaattttctcctt
cct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85752224_85753369
seq2: B6Ng01-015D20.b_46_1183

seq1  GAATTCATGTAAAGAAGTAAGACATCTCTCATATCTGCAATAGCACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAAAGAAGTAAGACATCTCTCATATCTGCAATAGCACTTTT  50

seq1  ATTTAAGTTGTTTGTTTTGTAAGCCAACAGGACATAAAATAACCTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTTGTTTGTTTTGTAAGCCAACAGGACATAAAATAACCTTATAA  100

seq1  TAAAATCCCCAGGAAAATCATATGAGATGCCTGGCCTCAAGCATTAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCCCAGGAAAATCATATGAGATGCCTGGCCTCAAGCATTAACAT  150

seq1  CACATAGACCATCAAGTTATATGGAGTTGCAGAAGAGAGTCTTTTAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGACCATCAAGTTATATGGAGTTGCAGAAGAGAGTCTTTTAGTGT  200

seq1  ACAAACATCCTGGTGGAAACAGCTCATCTCTGTTTGTATTGAGACCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATCCTGGTGGAAACAGCTCATCTCTGTTTGTATTGAGACCATGG  250

seq1  CACAAAATAAAACCTCTTAGTCTCAGCATTCATCTTTAAAGCTAGGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATAAAACCTCTTAGTCTCAGCATTCATCTTTAAAGCTAGGACAA  300

seq1  TGGAGGTAGCTCTATCTGAGGCTGTATTAAATATGATAAAGTCAGTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTAGCTCTATCTGAGGCTGTATTAAATATGATAAAGTCAGTATGC  350

seq1  CTGGCAAATATAAAGCAGTTGAAAATTATAGATTCCAATTGCATATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAATATAAAGCAGTTGAAAATTATAGATTCCAATTGCATATGTTA  400

seq1  CCATATTTATTAATATTAGGAAACATAGTCTATAACTTAATTTTAATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTATTAATATTAGGAAACATAGTCTATAACTTAATTTTAATGGG  450

seq1  TGGTGAATTGCAAACATGTCATTAGTTTTTGACACTTGCTTTATCAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAATTGCAAACATGTCATTAGTTTTTGACACTTGCTTTATCAAATG  500

seq1  GTGCGTCATCTCATTAAATATAGGCATTTCACTTGTGTGTATCTTACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTCATCTCATTAAATATAGGCATTTCACTTGTGTGTATCTTACAAT  550

seq1  AGAATGTGGCAGCAGGTGCTAAATGATGTGTGAGTCTTTCATGAGTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGGCAGCAGGTGCTAAATGATGTGTGAGTCTTTCATGAGTGGTG  600

seq1  TCTGCCTTAATTCCCTTCAGACCCACTTCTTCATGATACACATGCATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTAATTCCCTTCAGACCCACTTCTTCATGATACACATGCATCTA  650

seq1  TAGGTCTGAAGCAACATGTAGGAAGCCTTTGATACTGCCATGTTGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTGAAGCAACATGTAGGAAGCCTTTGATACTGCCATGTTGAAGGA  700

seq1  ACCACCCACAGTTTAGAGGTGACCAAGAAGAAAGACCTGCTCCAAGAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCACAGTTTAGAGGTGACCAAGAAGAAAGACCTGCTCCAAGAACC  750

seq1  AGCTGTTTGATATTTCTAAACAATAGCCAATTCTATTCAAATATATGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTGATATTTCTAAACAATAGCCAATTCTATTCAAATATATGATT  800

seq1  CTTGGCCCACATCTGTCATCACCAAGGTCCAGAGCATGGAGCTTTAGAAC  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTGGCCCACATCTGTCATCACCAAGGT-CAGAGCATGGAGCTTTAGAAC  849

seq1  TGCTTTAGAACGCTACTTAGGGACCATCAATAGAATAGTGTCTTGTGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGAACGCTACTTAGGGACCATCAATAGAATAGTGTCTTGTGTAT  899

seq1  CTTCTCATCATTTATGCATCTCCCTTTCAGTACCACAGTAACCTTTTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATCATTTATGCATCTCCCTTTCAGTACCACAGTAACCTTTTCTT  949

seq1  TCTGTGAACTCAATAGGAACATTCATTTTTATGTGTAGTACTGTATTTGG  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTGTGAACTCAATAGG-ACATTCATTTTTATGTGTAGTACTGTATTTGG  998

seq1  TATGGGGGTCTATTATTAACGTACTCAGCCCATGGAGAATGAAGAAAATG  1050
      ||| ||||||||||||| ||| |||||||||||||||| ||||| |||||
seq2  TAT-GGGGTCTATTATT-ACGGACTCAGCCCATGGAGATTGAAG-AAATG  1045

seq1  GGGATTCATGTCCAGTACATAGGAGTTGATAT-AGTAAAGTTGTATTTTA  1099
      ||||||||||| ||||||||| | | |||||| ||||||||||  |||| 
seq2  GGGATTCATGTTCAGTACATAAGGGGTGATATGAGTAAAGTTGGTTTTTT  1095

seq1  TATGGGAAGCATGTTTTAGACTGTGGATATACATGGAAATGTTAGAC  1146
       || ||||||||||||||||||||||||||   |||  |||||||||
seq2  AATTGGAAGCATGTTTTAGACTGTGGATAT--CTGG--ATGTTAGAC  1138

seq1: chr7_25294041_25294319
seq2: B6Ng01-015D20.g_72_577 (reverse)

seq1  AGGAAGGAGAAAATTC-------CAGA------------TGGGAAATGGA  31
      ||||||||||||||||       ||||            | ||| |  ||
seq2  AGGAAGGAGAAAATTCAGGTCTGCAGAAAAACATGCATTTTGGATAAAGA  50

seq1  GGAGAATGAA------CTAGGAC---------------------------  48
        |||| |||      | |  ||                           
seq2  AAAGAAAGAAAAGCTCCAACCACTTTACATACATACATATATATACATAA  100

seq1  TGC-----------------------CCTT--------------CTCTG-  60
      |||                       | ||              ||||| 
seq2  TGCATACAAACACATAAACATACATACATTTGCTGCATCTAAAGCTCTGA  150

seq1  -------GCTATAAAAGGCCTTTATGTGGCCCTGCCCCCA----------  93
             ||| ||| |  | ||||| |    |||  | ||          
seq2  CAAGTAAGCTCTAAGAAACTTTTATTT----CTGTTCTCAGTGTTTATAA  196

seq1  --------------ACCCC--ACCAGAAGCCTGGAGAGTT-GAGCA----  122
                    ||| |  || | |||   | |  |||  ||||    
seq2  TTTCTCTAAAAATCACCTCGTACAACAAGGTAGAACCGTTACAGCAGGAT  246

seq1  AAGGAGT----------AGAGTCTATGAGATCTC------TTCCT-----  151
      ||  | |          | |  || | | |||||      ||| |     
seq2  AATTAATTACATTTTAAAAATACTTTTACATCTCAATAAGTTCATATTAG  296

seq1  -----------TCCTTCCTTCCTT--------CCTTCCT-----------  171
                 |  ||| | || |         | || |           
seq2  ATTTAAGGCAATATTTCATGCCATAGATTGACACATCTTAAGGAAGAACA  346

seq1  -----------------TCCTTCC----------------------TTCC  182
                       || ||||                      |   
seq2  GAAGAATTATGTACATGTCTTTCCAGTAAGACAAGTAACTTTAATATCTG  396

seq1  TTCCT--TTCTTTTTGTT--TTGTTTGTTT----------GTTTGTTTGT  218
      || ||  |||  |  |||  ||||  ||||           |||||||| 
seq2  TTACTAGTTCCATACGTTAATTGTAAGTTTAAAGCAATAATTTTGTTTG-  445

seq1  TTTGTTTGTTTGTTTGTTTTTTAAGACAGGGTTTCTCTGTGTAGCCCTGG  268
      |||||||||||| ||||||||| ||||||||||||||||| |||||||||
seq2  TTTGTTTGTTTGCTTGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGG  495

seq1  CTGTCTTGGAA  279
      ||||| |||||
seq2  CTGTCCTGGAA  506