BAC Information

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BAC

Clone NameB6Ng01-016O01
Chromosome7 (Build37)7 (Build37)
Map Location 39,338,361 - 39,338,75648,341,746 - 48,344,111
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp536, LOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171
Downstream geneLOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016O01.bB6Ng01-016O01.g
ACCDH850717DH850718
length390892
definitionDH850717|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O01, 5' end.DH850718|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,338,361 - 39,338,756)(48,341,746 - 48,344,111)
sequence
cttaactattctgtgctgttaagggagaacatagccagtttcaatatggc
cagtgtatctctgctttcacttgatgccagattcttggaaaagtgtgaga
caatagctgtttgattccctcttggatagccacttatgttatggtgggag
gaatggtgtaataattattattttaagtgtttcacacagcatatctccag
acagcattcaataaataaggtgacattccaggtgctgatggctcctgaaa
atccttattgcacaacccctcccccaaggaagtgatgaaagcatgaatgg
cagagatccatgagaccatcctgtaggccgttcctcatctcccccttgta
tgacatgcctctggagtgatatctcttttagggctggaag
gaattctattttaattccacttttgagtgagactccacatcctcccttgg
gtccttcttatttccaagtttctctggttctgtggatttcagcatgatta
tcctgtactttgtggctaatatttacttagaagtgataccatgtgtatct
ttctgtctctgggttacctcattcaagatggaagttcctagttctatcca
tttacctgcaactttcatgatgtctttgtttttaatagctgagtagaatt
tcattttttaaatttaccccattttctctattcattcttcatttgatgga
catctaggtcgttcccagtgtctggatattatgagtaatgttgctacgag
cataggagagcaagtgtccatgtgatatggagcatctgttgggtatattc
ccaggagtagtatatttgggtcttgaggttagaactcttcccaattttct
gagaaaccaccaaattaatttcccaagtgtttgtactagtatccactctc
accagaaatgaacaagtgttccccttgttctacgccctcaacatcatgcg
ttgtcacttgagtcagagtggttttgatttgcagctgatgactaagggca
ttgaaagtttctttaagtgcttcttggccattaggatttctttgttgaga
agcctatagaatgggaaaagatctttaccaacccaatatactaaagagga
atatatctatatatctcttattatatctaaattatgtaaagacctcaaga
aattagacactaacaaaccaaggaaaacaattataaaatcagcagataaa
gtaacaatgttttgaagaatgttctcaggtgaggtgtttttatgtatttt
gggtcccttacatgttaggtagtcacaatttataggatgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_39338361_39338756
seq2: B6Ng01-016O01.b_43_438 (reverse)

seq1  CTTCCAGCCCTCAAAGAGATATCACTCCAGAGGCATGTCATACAAGGGGG  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCCCTAAAAGAGATATCACTCCAGAGGCATGTCATACAAGGGGG  50

seq1  AGATGAGGAACGGCCTACAGGATGGTCTCATGGATCTCTGCCATTCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGAACGGCCTACAGGATGGTCTCATGGATCTCTGCCATTCATGC  100

seq1  TTTCATCACTTCCTTGGGGGAGGGGTTGTGCAATAAGGATTTTCAGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCACTTCCTTGGGGGAGGGGTTGTGCAATAAGGATTTTCAGGAGC  150

seq1  CATCAGCACCTGGAATGTCACCTTATTTATTGAATGCTGTCTGGAGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCACCTGGAATGTCACCTTATTTATTGAATGCTGTCTGGAGATAT  200

seq1  GCTGTGTGAAACACTTAAAATAATAATTATTACACCATTCCTCCCACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGAAACACTTAAAATAATAATTATTACACCATTCCTCCCACCAT  250

seq1  AACATAAGTGGCTATCCAAGAGGGAATCAAACAGCTATTGTCTCACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGTGGCTATCCAAGAGGGAATCAAACAGCTATTGTCTCACACTT  300

seq1  TTCCAAGAATCTGGCATCAAGTGAAAGCAGAGATACACTGGCCATATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGAATCTGGCATCAAGTGAAAGCAGAGATACACTGGCCATATTGA  350

seq1  AACTGGCTATGTTCTCCCTTAACAGCACAGAATAGTTAAGGAATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTATGTTCTCCCTTAACAGCACAGAATAGTTAAGGAATTC  396

seq1: chr7_48341746_48344111
seq2: B6Ng01-016O01.g_73_957 (reverse)

seq1  AATCATCCTATAAAATGTGACTACCTAACCAGTAAGGAGACCCCACACTT  50
      |||||||||||||| ||||||||||||||  |||||| ||||| | |  |
seq2  AATCATCCTATAAATTGTGACTACCTAACATGTAAGG-GACCCAAAA--T  47

seq1  ACATAAAAACACCTCACCTGAGAATATTCTTTAAAACATTGTTACCTTAT  100
      |||||||||||||||||||||||| |||||| ||||||||||||| ||||
seq2  ACATAAAAACACCTCACCTGAGAACATTCTTCAAAACATTGTTACTTTAT  97

seq1  TTGCCTGATTTTATAATTGGTTTGCTTGGTTTG-TAGTGTCTAATTTCTT  149
       || ||||||||||||||| ||| ||||||||| ||||||||||||||||
seq2  CTG-CTGATTTTATAATTGTTTTCCTTGGTTTGTTAGTGTCTAATTTCTT  146

seq1  GAGTTCTTTACATACTTTAGATATATATAAAGGATATACATACATATATA  199
      ||| |||||||||| ||||||||||              |||   | | |
seq2  GAGGTCTTTACATAATTTAGATATA--------------ATA---AGAGA  179

seq1  TATATATATATATTCCTCTCTAGTATATTGGGTTGGTAAAGATCTTTTCC  249
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TATATAGATATATTCCTCTTTAGTATATTGGGTTGGTAAAGATCTTTTCC  229

seq1  CATTCTGTAGGCTTCTCAACAAAGAAATCTCTAATGGCCAAGAAGCACTT  299
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  CATTCTATAGGCTTCTCAACAAAGAAATC-CTAATGGCCAAGAAGCACTT  278

seq1  AAAGAAACTTTCAATGTCCTTAGTCATCAGCTGCAAATCAAAACCACTCT  349
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGAAACTTTCAATGCCCTTAGTCATCAGCTGCAAATCAAAACCACTCT  328

seq1  GACTCAAGTGACAACACATGCTGTCGAGGGTGTAGAACAAGGGGAACACT  399
      ||||||||||||||| |||| ||| ||||| |||||||||||||||||||
seq2  GACTCAAGTGACAACGCATGATGTTGAGGGCGTAGAACAAGGGGAACACT  378

seq1  CATTCTTTGCTGGTGAGAGTGGATACTAGTACAAACACTTGGGAAAACAA  449
        ||| || |||||||||||||||||||||||||||||||||||||  ||
seq2  TGTTCATTTCTGGTGAGAGTGGATACTAGTACAAACACTTGGGAAATTAA  428

seq1  TTTGGTGGTTTCTCAGTAAATTGGGAATAGTTCTAACCTCAAGACCCAGC  499
      |||||||||||||||| |||||||||| ||||||||||||||||||||  
seq2  TTTGGTGGTTTCTCAGAAAATTGGGAAGAGTTCTAACCTCAAGACCCAAA  478

seq1  TATACTACTCCTGGGCACATACCCAAAAGATGCTCTACTGTATAACACAG  549
      ||||||||||||||| | |||||||| |||||||| |   ||| |||  |
seq2  TATACTACTCCTGGGAATATACCCAACAGATGCTCCA---TATCACATGG  525

seq1  ACACTTGCTCACCTATGCTCATAGCAACTTTACTTATACTATCTAGACAC  599
      |||||||||| ||||||||| ||||||| ||||| ||| |||| ||||||
seq2  ACACTTGCTCTCCTATGCTCGTAGCAACATTACTCATAATATCCAGACAC  575

seq1  TGGGAATGACCTAGATGTCCCTCAAGTGAAGAATGAATAGAGAAAATGTG  649
      |||||| ||||||||||||| |||| |||||||||||||||||||||| |
seq2  TGGGAACGACCTAGATGTCCATCAAATGAAGAATGAATAGAGAAAATGGG  625

seq1  GTACAATTACACAATGAAATACTACTTAGCTATTAAAAACAAAGACATCA  699
      ||| | ||| | |||||||| ||||| |||||||||||||||||||||||
seq2  GTAAATTTAAAAAATGAAATTCTACTCAGCTATTAAAAACAAAGACATCA  675

seq1  TGAAAGTTGCAGGTAAATGGATAGAACTAGGAACTACCATCCTGAATGAG  749
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  TGAAAGTTGCAGGTAAATGGATAGAACTAGGAACTTCCATCTTGAATGAG  725

seq1  GTAACCCAGAGCCACAAAGATACACATGGTATCTACTCACTTCTAAGTAA  799
      ||||||||||| || ||||||||||||||||     ||||||||||||||
seq2  GTAACCCAGAGACAGAAAGATACACATGGTA-----TCACTTCTAAGTAA  770

seq1  ATATTAGCCACAAAGTACAGGATAATCATGCTAAAATCCACAGAACCAGA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATATTAGCCACAAAGTACAGGATAATCATGCTGAAATCCACAGAACCAGA  820

seq1  GAAGCTTAGAAATAAGAAGGACCCAAGGGAGGATGTGGAATCTCACTCAA  899
      ||| ||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  GAAACTTGGAAATAAGAAGGACCCAAGGGAGGATGTGGAGTCTCACTCAA  870

seq1  AAGTGGAATTAAAATAGAATTCAGATGTGGATGGAGGGAGGATATTGGGT  949
      |||||||||||||||                                   
seq2  AAGTGGAATTAAAAT-----------------------------------  885

seq1  AGGAGGGGAGTGTGGAGGGGAATAGGGATGGGGATAAGATATGGGAATGG  999
                                                        
seq2  --------------------------------------------------  885

seq1  GGCAGGAGAGGGCCAGGAGAGAGAACAGATATACATGGGGGACATCTGTG  1049
                                                        
seq2  --------------------------------------------------  885

seq1  GGACTATCTGGAGACATGTGAAAAGGGAGACTCCAGGGAGTCTATGAGGT  1099
                                                        
seq2  --------------------------------------------------  885

seq1  TGACTTTAGCTGAGACTCCTACAAGTGAGGTATATAGAGACTGAAGTGGC  1149
                                                        
seq2  --------------------------------------------------  885

seq1  CACTTCCTGTAGACAGGCATGACTTCCAGTGGAGAGACGGGGACTCCATT  1199
                                                        
seq2  --------------------------------------------------  885

seq1  ACAATCACAAAACTTTGAACCCAAAATTTGTACTACCTACAAGATGTGCA  1249
                                                        
seq2  --------------------------------------------------  885

seq1  GGGATAAAGATGGAGCAGAGTATGAGGGAATGGCCAAGTACGTTCTTTTC  1299
                                                        
seq2  --------------------------------------------------  885

seq1  TAATGAAAGACAGACAGGGAATGGATACTGATGACAGAGGGACTGGGGAT  1349
                                                        
seq2  --------------------------------------------------  885

seq1  GGGCAAGACAGAATAGAGGGAGGGGAAAATAACATCATGATATATTATAT  1399
                                                        
seq2  --------------------------------------------------  885

seq1  GAGAACATAATCTATTTTCAATAAAAAGTAAATAAATTAATTGAAAAATA  1449
                                                        
seq2  --------------------------------------------------  885

seq1  CTAAAACAATATAAAGAAATTATGGGATTACAAAAGAAAATACAAATAAC  1499
                                                        
seq2  --------------------------------------------------  885

seq1  AGTCTATTTCTTCTCCCCCCTCTCTCCCCCCCCTCTCTCCCCCACACAGA  1549
                                                        
seq2  --------------------------------------------------  885

seq1  GTGAGCCTCCTCTCAGTCCTGATGACTGTCTACTCACCTTGGGTCTATAG  1599
                                                        
seq2  --------------------------------------------------  885

seq1  TGCCACAGTAGGAGAGTGTTGGTTTCTGAAACATCCACAAGTAGGAGTTT  1649
                                                        
seq2  --------------------------------------------------  885

seq1  ACTTTCAGGCATAGCCTTGGCAAATGTATGCCAGTATCTGACAAGTGATA  1699
                                                        
seq2  --------------------------------------------------  885

seq1  TGTCAGGAGGGCTCCCATTTTGGTTGCCATGTGAAAAAGGACATTCTTCC  1749
                                                        
seq2  --------------------------------------------------  885

seq1  AGCAGACATTTGCCCAGAACTACACAACACTGTACTGTCTGCGTGGAGGG  1799
                                                        
seq2  --------------------------------------------------  885

seq1  ACATTTCTATGGAGCCAGACATATGGCTGCAAGCTACAGCACTAGTTCAG  1849
                                                        
seq2  --------------------------------------------------  885

seq1  TGTGAAAGCTCCGCAGTGATTGTTGTAATACCTCCTAGGGTTGCTGGAGG  1899
                                                        
seq2  --------------------------------------------------  885

seq1  ACAGCTTAAGTGGCTCTAGTATCATTTTTAGTGAAGACTTCTTGATACAG  1949
                                                        
seq2  --------------------------------------------------  885

seq1  TCAGAATGAGTTAGTGCTTTAAGGAATACTTAGACTACAGATGGCATATG  1999
                                                        
seq2  --------------------------------------------------  885

seq1  AACATGTACAAGACCCATGCCATGATCCATATATAGTCTATGAATCTACC  2049
                                                        
seq2  --------------------------------------------------  885

seq1  AGGGAGACACAGAAATTGGAGATACAATACAAAAAAAAGAGAAGAAAGAA  2099
                                                        
seq2  --------------------------------------------------  885

seq1  GCAAAGGAAGAAAGAGAGAGAGAGAGAGAGGGGGGGGGGAGGGAGGGAGG  2149
                                                        
seq2  --------------------------------------------------  885

seq1  GAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAA  2199
                                                        
seq2  --------------------------------------------------  885

seq1  GAAAGAAAGAAAGACAGACACGAGACTTGCATATATGTCTAAAAGAGGTC  2249
                                                        
seq2  --------------------------------------------------  885

seq1  AAAAAAAAAAAAACATTCAGGTTTGTGAGGATACACCAAAAAGGGGAAAA  2299
                                                        
seq2  --------------------------------------------------  885

seq1  GATTAGCACTTTAATCACAAATGAACAAAAATACCTGTGGAATCTCACTC  2349
                                                        
seq2  --------------------------------------------------  885

seq1  AAAAGTGGAATTAAAAT  2366
                       
seq2  -----------------  885