BAC Information

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BAC

Clone NameB6Ng01-016P09
Chromosome7 (Build37)
Map Location 16,619,982 - 16,620,822
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1
Downstream geneZfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016P09.bB6Ng01-016P09.g
ACCDH850777DH850778
length838725
definitionDH850777|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P09, 5' end.DH850778|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggccagcctaggctacatagcagattccatctcaaaacataa
aaagaatagaatcacatgtgatgtgtgtactagtccaggtccgtatgtgc
accgctgtacattatatgatcagttatgatacatccagaaccgtaaggga
agtgcgcaaacaaaattctacatctacctgctcaggcgtccctgtcacct
cagctgttctggcctgcggtcactcatcctttgctgtccctgcagatggc
tctgtgtggagattttgctgggtgtaaaggcttatatccctccttgtgtc
ttcctcccccagctgcctttcagataccacgtgtgcacgcttttctctgt
ctcatgttcagtggctcgcagacactgcttgactcagtagtagagcattt
tgcttcccccccccctttttttattttttttggtttttcgagacagggtt
tctctgtatagccctggctgtcctggaactcactttgtagaccaggctgg
cctcgaactcagaaatctgcctgcctctgcctgcccagtgctgggattaa
aggcgtgcgccaccaccgcccttaaaaaaccttttatcacatttatttac
tgatttgagtttatgaagagggagtgcatgccatagcacatgtgtggaga
tcaaagaacaatatgcgttggtcatttttctcgttttttgtttttgtttg
tttttgttttttttttttaccctgtggtcttggggaatctacttaggcct
ctgtgctaagctgcaagcaccttttacctgcacagccattttacctgccc
agtaaaaatagttctcaatgcatgagacctggggtcat
gaattcaagactattccccacttccccttctatcagggtttgtcttgttt
ccttgtaagtttttagttcttaattaatggtcaaaccattgcatctctgg
aaattctctttgtgttcaagctcaggagtacatttataaagataagatca
taattgcatcagtgctggaggtggagcttacattattaatgggtttccag
ttgcccggtaacatctgctttctttgaaaggctcagtggtatcttccaga
cactacaagatcatggttagtcatggttgttctcagaaacattgccaagg
tgagtttagctgttgggggaaaagtgaccaggtaagcaaagaataacact
aggacaaggtggggttactttcatcatttcaccatttcactaatttctat
catcctttctattatttctgtcacaaaccaatttcaaaagtgctatctct
ggttttatgctgaggtctttgatccatttgctgaactgagttttgtgcat
gataataagtatgaatctatttgcatttttctatacgcaagcatccgatt
tgacctgtacaatttggtcgaagatgctgggtttttttcctccaatgtat
atttctggcttcttgatcaaaaatcaggtgtccataggtatgtgaactta
tgcctaggtcttaaatttgttcccactgatcaacatgtctacctttgtgc
caatacaatggtgggggggggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16619982_16620822
seq2: B6Ng01-016P09.b_41_878 (reverse)

seq1  ATGACCCCAGGTCTCATGCATTGAGAACTATATTCTACT-GGCAGGTAAA  49
      ||||||||||||||||||||||||||||||| || |||| ||||||||||
seq2  ATGACCCCAGGTCTCATGCATTGAGAACTAT-TTTTACTGGGCAGGTAAA  49

seq1  ATGGCTGTGCAGGTAAAAGGTGCTTGCAGCTAAGCACAGGGGCCTGAGTT  99
      ||||||||||||||||||||||||||||||| ||||||| ||||| || |
seq2  ATGGCTGTGCAGGTAAAAGGTGCTTGCAGCTTAGCACAGAGGCCTAAG-T  98

seq1  CGATTCCCCAAGACCACAGGGTAAAAAAAAAAAACAAAAACAAAAACAAA  149
       ||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  AGATTCCCCAAGACCACAGGGTAAAAAAAAAAAACAAAAAC--AAACAAA  146

seq1  AACAAAAAACGAGAAAAATGACCAACGCATATTGTTCTTTGATCTCCACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACGAGAAAAATGACCAACGCATATTGTTCTTTGATCTCCACA  196

seq1  CATGTGCTATGGCATGCACTCCCTCTTCATAAACTCAAATCAGTAAATAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTATGGCATGCACTCCCTCTTCATAAACTCAAATCAGTAAATAA  246

seq1  ATGTGATAAAAGGTTTTTTAAGGGCGGTGGTGGCGCACGCCTTTAATCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATAAAAGGTTTTTTAAGGGCGGTGGTGGCGCACGCCTTTAATCCC  296

seq1  AGCACTGGGCAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGCAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG  346

seq1  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGT  396

seq1  CTCGAAAAACCAAAAAAAATAAAAAAAGGGGGGGGGGAAGCAAAATGCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAAAACCAAAAAAAATAAAAAAAGGGGGGGGGGAAGCAAAATGCTC  446

seq1  TACTACTGAGTCAAGCAGTGTCTGCGAGCCACTGAACATGAGACAGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGAGTCAAGCAGTGTCTGCGAGCCACTGAACATGAGACAGAGAA  496

seq1  AAGCGTGCACACGTGGTATCTGAAAGGCAGCTGGGGGAGGAAGACACAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTGCACACGTGGTATCTGAAAGGCAGCTGGGGGAGGAAGACACAAG  546

seq1  GAGGGATATAAGCCTTTACACCCAGCAAAATCTCCACACAGAGCCATCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATATAAGCCTTTACACCCAGCAAAATCTCCACACAGAGCCATCTG  596

seq1  CAGGGACAGCAAAGGATGAGTGACCGCAGGCCAGAACAGCTGAGGTGACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGCAAAGGATGAGTGACCGCAGGCCAGAACAGCTGAGGTGACA  646

seq1  GGGACGCCTGAGCAGGTAGATGTAGAATTTTGTTTGCGCACTTCCCTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGCCTGAGCAGGTAGATGTAGAATTTTGTTTGCGCACTTCCCTTAC  696

seq1  GGTTCTGGATGTATCATAACTGATCATATAATGTACAGCGGTGCACATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGATGTATCATAACTGATCATATAATGTACAGCGGTGCACATAC  746

seq1  GGACCTGGACTAGTACACACATCACATGTGATTCTATTCTTTTTATGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGACTAGTACACACATCACATGTGATTCTATTCTTTTTATGTTT  796

seq1  TGAGATGGAATCTGCTATGTAGCCTAGGCTGGCCTGGAATTC  841
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGAATCTGCTATGTAGCCTAGGCTGGCCTGGAATTC  838