BAC Information

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BAC

Clone NameB6Ng01-017L21
Chromosome7 (Build37)3 (Build37)
Map Location 7,794,184 - 7,795,35841,058,695 - 41,059,248
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUsp29, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353
Downstream geneVmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017L21.bB6Ng01-017L21.g
ACCDH851336DH851337
length1,1651,055
definitionDH851336|Mus musculus domesticus DNA, BAC clone: B6Ng01-017L21, 5' end.DH851337|Mus musculus domesticus DNA, BAC clone: B6Ng01-017L21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,794,184 - 7,795,358)(41,058,695 - 41,059,248)
sequence
gaattccattaaactgtagtttgaatatcaaatctttcttgcaacaatgc
caccttccatgaattttcaatgagtaaaatatggatgttaatgaagaatg
tgttccttaaagggacattgctaatgatcatatttatatgaagactgact
gagggaagtgactgtttttgttaatgcactttagacccatttggtttccc
attatataatgagaattgataaatgtgaaatatttagtgtagccacaaac
actcaatggtctttttgaaaagtcgtttcctagaatgcagcgtaattaaa
gcatctgactctcattctgttttccagaattttctgagtccaggacctta
atcagaactgcacacagagggcaatctctgaaagaaattaagttcatgca
aatgtcagtagttttacctatcccttccataattacaatatgaatagcat
gttgacatatctacaagcttatttcatttcattttttatttattgttact
caattttttttacaatctagtagttatccccctcctggtctgccccctga
cttcctcatctaacatttcctcccccatttccaaaatgatatcactacat
ccccaacatccagtccttcccaatccctggggaattaagtctctctgggg
ttaggtgtttctctcccactgatgctagaccaggaagtcttatgctgcat
atttgttgggggcttcacatcagctagtgtatgatctctggttagaggct
caatgtctgagagatcttgcttttccatgtttgttgagaatgctggtcac
cctcctcttcagcttcttccacatattcccaattcatccacagagtccct
gggcttctgatcattgttggatataatatatttgtatttgacagcagaaa
aggaacatttcctccttagaaatattggccagtagcttgaagaacaaaag
aaaaaaagtcagtattttcttcagtgtgtgctcttacgggaaatcagaaa
atatgtcagatttcatctttgctgattattagttactcctctgtctgttt
cctcatgattattgatttggagaattgtttcttgtgtaaccatgtctgtc
cagatctcatttttcacccaatggtggatccatttgctattcaacatttt
gaagttaccgagggc
gaattctttgttcagctctgagccccatttttaatgggattatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatccgatttgggaaaggtaaagagcctttcccaatttattggtggcctt
tttgtcttattaacggtgtcttttgccttgcagaagctttgcaattttat
gaggtcccatttatagattcttgatctcacagcacaagccattgctgttc
tattcaggaatttttcccctgtacccatatcttcgaggcttttccctact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagatagaaatggatcaattcgca
ttcttctacatgataaccgccagttgtgcgagcaccattcgttgaaaatg
ctgtcttttttccactggatgggtttagctcccttgtcaaagatcaagtg
accataggtgtgtggattcatctctgggtcttcaattctgctccattggt
ctacttgattgtcactataccagtaccatgcagttttgatcacaattgct
ctgtagtacagcttgaggtccggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
ataacaaatctgccgattgccctttctaattcgttgaagaattgagttgg
aattttgatggggattgcattgaatctgtagattgcttttggcaagatag
ccatttttacaatgttgatcctgcctaatccatgagcatgggagattctt
ttccatcttctgagatcttctttaatttcttttctttagagacttgaagt
tcttatcatacagatcttttcactttccttagttagagtcacgcaaaggt
attttatattatttgtgactatttgaagaggtgttgttttcctaatttct
ttctcagcttattatctttgtgaacagaaaggccatgtgactgtttgagt
taatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7794184_7795358
seq2: B6Ng01-017L21.b_45_1209

seq1  GAATTCCATTAAACTGTAGTTTGAATATCAAATCTTTCTTGCAACAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAAACTGTAGTTTGAATATCAAATCTTTCTTGCAACAATGC  50

seq1  CACCTTCCATGAATTTTCAATGAGTAAAATATGGATGTTAATGAAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCATGAATTTTCAATGAGTAAAATATGGATGTTAATGAAGAATG  100

seq1  TGTTCCTTAAAGGGACATTGCTAATGATCATATTTATATGAAGACTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTAAAGGGACATTGCTAATGATCATATTTATATGAAGACTGACT  150

seq1  GAGGGAAGTGACTGTTTTTGTTAATGCACTTTAGACCCATTTGGTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGTGACTGTTTTTGTTAATGCACTTTAGACCCATTTGGTTTCCC  200

seq1  ATTATATAATGAGAATTGATAAATGTGAAATATTTAGTGTAGCCACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAATGAGAATTGATAAATGTGAAATATTTAGTGTAGCCACAAAC  250

seq1  ACTCAATGGTCTTTTTGAAAAGTCGTTTCCTAGAATGCAGCGTAATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGGTCTTTTTGAAAAGTCGTTTCCTAGAATGCAGCGTAATTAAA  300

seq1  GCATCTGACTCTCATTCTGTTTTCCAGAATTTTCTGAGTCCAGGACCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGACTCTCATTCTGTTTTCCAGAATTTTCTGAGTCCAGGACCTTA  350

seq1  ATCAGAACTGCACACAGAGGGCAATCTCTGAAAGAAATTAAGTTCATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACTGCACACAGAGGGCAATCTCTGAAAGAAATTAAGTTCATGCA  400

seq1  AATGTCAGTAGTTTTACCTATCCCTTCCATAATTACAATATGAATAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTAGTTTTACCTATCCCTTCCATAATTACAATATGAATAGCAT  450

seq1  GTTGACATATCTACAAGCTTATTTCATTTCATTTTTTATTTATTGTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATATCTACAAGCTTATTTCATTTCATTTTTTATTTATTGTTACT  500

seq1  CAATTTTTTTTACAATCTAGTAGTTATCCCCCTCCTGGTCTGCCCCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTTTACAATCTAGTAGTTATCCCCCTCCTGGTCTGCCCCCTGA  550

seq1  CTTCCTCATCTAACATTTCCTCCCCCATTTCCAAAATGATATCACTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCATCTAACATTTCCTCCCCCATTTCCAAAATGATATCACTACAT  600

seq1  CCCCAACATCCAGTCCTTCCCAATCCCTGGGGAATTAAGTCTCTCTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACATCCAGTCCTTCCCAATCCCTGGGGAATTAAGTCTCTCTGGGG  650

seq1  TTAGGTGTTTCTCTCCCACTGATGCTAGACCAGGAAGTCTTATGCTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGTTTCTCTCCCACTGATGCTAGACCAGGAAGTCTTATGCTGCAT  700

seq1  ATTTGTTGGGGGCTTCACATCAGCTAGTGTATGATCTCTGGTTAGAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGGGGGCTTCACATCAGCTAGTGTATGATCTCTGGTTAGAGGCT  750

seq1  CAATGTCTGAGAGATCTTGCTTTTCCATGTTTGTTGAGAATGCTGGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTGAGAGATCTTGCTTTTCCATGTTTGTTGAGAATGCTGGTCAC  800

seq1  CCTCCTCTTCAGCTTCTTCCACATATTCCCAATTCATCCACAGAGTCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTCAGCTTCTTCCACATATTCCCAATTCATCCACAGAGTCCCT  850

seq1  GGGCTTCTGATCATTGTTGGATATAATATATTTGTATTTGACAGCAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTGATCATTGTTGGATATAATATATTTGTATTTGACAGCAGAAA  900

seq1  AGGAACATTTCCTCCTTAG-AATATTGGCCAGTAGCTTGAAGAACAAAAG  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGAACATTTCCTCCTTAGAAATATTGGCCAGTAGCTTGAAGAACAAAAG  950

seq1  -AAAAAAGTCAGTATTTTCTTCAGTGTGTGCTCTTACGGGAAATCAGAAA  998
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTCAGTATTTTCTTCAGTGTGTGCTCTTACGGGAAATCAGAAA  1000

seq1  ATATGTTCAGATTTCATCTTTGCTGATTATTTAGTTACT-CTCTGTCTGT  1047
      ||||| ||||||||||||||||||||||| ||||||||| ||||||||||
seq2  ATATG-TCAGATTTCATCTTTGCTGATTA-TTAGTTACTCCTCTGTCTGT  1048

seq1  TT-CTCATTGATTATTTGATTTGGTAGATTGTTTCTATGTGTAACCATGT  1096
      || |||| |||||| |||||||||   ||||||||| |||||||||||||
seq2  TTCCTCA-TGATTA-TTGATTTGGAGAATTGTTTCT-TGTGTAACCATGT  1095

seq1  CTGTCCTAGATCTCATTTTTCTACGCAAAGTGGTGGATTCAATTGCCTTA  1146
      |||||| |||||||||||||| || |||  |||||||| || ||| ||  
seq2  CTGTCC-AGATCTCATTTTTC-ACCCAA--TGGTGGATCCATTTG-CTAT  1140

seq1  TCAACATTTTTTGGAAGTTACCAGAGGGC  1175
      ||||||||||   ||||||||| ||||||
seq2  TCAACATTTT---GAAGTTACC-GAGGGC  1165

seq1: chr3_41058695_41059248
seq2: B6Ng01-017L21.g_556_1120 (reverse)

seq1  AATTAACTCAAACAAGTCA-ATGGCCTTTCTCTACACAAAGAATAAACAG  49
      ||||||||||||| ||||| ||||||||||| | ||||||||   || | 
seq2  AATTAACTCAAAC-AGTCACATGGCCTTTCTGTTCACAAAGA--TAATAA  47

seq1  GCTGAGAAAGAAATTAGGGAAACAACACC-CTTCTCAATAGTCACAAATA  98
      |||||||||||||||||| |||||||||| ||||  ||||||||||||||
seq2  GCTGAGAAAGAAATTAGGAAAACAACACCTCTTC-AAATAGTCACAAATA  96

seq1  ATATAAAATATCTTGGCATGACTCTAACTAAGG-AAGTG-AAAGATCTGT  146
      |||||||||| ||| || ||||||||||||||| ||||| ||||||||||
seq2  ATATAAAATACCTTTGCGTGACTCTAACTAAGGAAAGTGAAAAGATCTGT  146

seq1  ATGACAAGAACTTCAAGTCTCTGAAG-AAAGAAATTAAAGAAGATCTCAG  195
      |||| ||||||||||||||||| ||| |||||||||||||||||||||||
seq2  ATGATAAGAACTTCAAGTCTCTAAAGAAAAGAAATTAAAGAAGATCTCAG  196

seq1  AAGATGGAAA--GATCTCCCATGCTCATGGATT-GGCAGGATCAACATTG  242
      ||||||||||   |||||||||||||||||||| ||||||||||||||||
seq2  AAGATGGAAAAGAATCTCCCATGCTCATGGATTAGGCAGGATCAACATTG  246

seq1  TAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCC  296

seq1  ATCAAAATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAATCTGCA-  341
      |||||||||||||||||||||||||||||||| ||||| |||||| ||| 
seq2  ATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATCGGCAG  346

seq1  ------AATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTT  385
             |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTT  396

seq1  CTCAAGGATAACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCT  435
      ||||||||||| |||||||||||||||||||||||||| ||||| |||||
seq2  CTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCGGACCTCAAGCT  446

seq1  TTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACA  485
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTACTACAGAGCAATTGTGATCAAAACTGCATGGTACTGGTATAGTGACA  496

seq1  GACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACAC  535
        |||| |||||||||||  |||||||||||| |||| | ||||||||||
seq2  ATCAAGTAGACCAATGGAGCAGAATTGAAGACCCAGAGATGAATCCACAC  546

seq1  ACCTATGGTCACTTGATCT  554
      |||||||||||||||||||
seq2  ACCTATGGTCACTTGATCT  565