BAC Information

Click to search

BAC

Clone NameB6Ng01-020B24
Chromosome7 (Build37)
Map Location 134,120,739 - 134,281,480
singlet/doubletdoublet
Overlap geneCdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn
Upstream geneGsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik
Downstream geneCd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020B24.bB6Ng01-020B24.g
ACCDH853013DH853014
length637104
definitionDH853013|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B24, 5' end.DH853014|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,120,739 - 134,121,374)(134,281,377 - 134,281,480)
sequence
gaattccattcgggtgtggcataatggctcatgcttgtaatgccagcact
gataaggtaggtagattgctccaagtcagaagtcatattgagtaccacgt
gagccaggactacacagtaaaatcctgcaaaaataagtgattggggctga
aggctaagtttgttctcagaggttaagactgcttactgctgcctggcggt
ggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcagat
ttctgagtttgaggccagcctggtctacaaagtgagttccaggacagcca
gggctatacagagaaaccctgtctcaaaaacaaacaaacaaagcaaacaa
aacaaacaacaacaacaaaaccgaaagaatgcttactgttcttctagagg
acctagatttgattcccagaaccaacatgatggcttacaaccaccagttc
caaggaatcaatgtcctcttcaggctatatatatatatgtgtgtgtgtgt
gtgtgtgtatatatatatatatacgctgatggacactgagaccatagaag
atgaataaacttttaaaaatgtaagtaaataacaaagttccattcaacag
gtgtttactaggtagttgctaggcacaaaacattcgg
ccgtctggaccccgagcatcctttcatgcctccactgaacccttgggtcc
ccacaagcaactatgggagtaggaatgggtggggcaggatgcaggggtgg
agtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_134120739_134121374
seq2: B6Ng01-020B24.b_44_680

seq1  GAATTCCATTCGGGTGTGGCATAATGGCTCATGCTTGTAATGCCAGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCGGGTGTGGCATAATGGCTCATGCTTGTAATGCCAGCACT  50

seq1  GATAAGGTAGGTAGATTGCTCCAAGTCAGAAGTCATATTGAGTACCACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGTAGGTAGATTGCTCCAAGTCAGAAGTCATATTGAGTACCACGT  100

seq1  GAGCCAGGACTACACAGTAAAATCCTGCAAAAATAAGTGATTGGGGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGACTACACAGTAAAATCCTGCAAAAATAAGTGATTGGGGCTGA  150

seq1  AGGCTAAGTTTGTTCTCAGAGGTTAAGACTGCTTACTGCTGCCTGGCGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGTTTGTTCTCAGAGGTTAAGACTGCTTACTGCTGCCTGGCGGT  200

seq1  GGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGAT  250

seq1  TTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA  300

seq1  GGGCTATACAGAGAAACCCTGTCTCAAAAACAAACAAACAAAGCAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATACAGAGAAACCCTGTCTCAAAAACAAACAAACAAAGCAAACAA  350

seq1  AACAAACAACAACAACAAAACCGAAAGAATGCTTACTGTTCTTCTAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAACAACAACAAAACCGAAAGAATGCTTACTGTTCTTCTAGAGG  400

seq1  ACCTAGATTTGATTCCCAGAACCAACATGATGGCTTACAACCACCAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGATTTGATTCCCAGAACCAACATGATGGCTTACAACCACCAGTTC  450

seq1  CAAGGAATCAATGTCCTCTTCAGGCTATATATATATATGTGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATCAATGTCCTCTTCAGGCTATATATATATATGTGTGTGTGTGT  500

seq1  GTGTGTGTATATATATATATATACGCTGATAGACACTGAGACCATAGAAG  550
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGTGTGTATATATATATATATACGCTGATGGACACTGAGACCATAGAAG  550

seq1  ATAAATAAACTTTTAAAAATGTAAGTAAATAACAAAGTTCCATTCAACAG  600
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAACTTTTAAAAATGTAAGTAAATAACAAAGTTCCATTCAACAG  600

seq1  GTGTTTACTAGGTAGTTGCTAGGCAC-AAACATTCGG  636
      |||||||||||||||||||||||||| ||||||||||
seq2  GTGTTTACTAGGTAGTTGCTAGGCACAAAACATTCGG  637

seq1: chr7_134281377_134281480
seq2: B6Ng01-020B24.g_70_173 (reverse)

seq1  CACTCCACCCCTGCATCCTGCCCCACCCATTCCTACTCCCATAGTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCACCCCTGCATCCTGCCCCACCCATTCCTACTCCCATAGTTGCTT  50

seq1  GTGGGGACCCAAGGGTTCAGTGGAGGCATGAAAGGATGCTCGGGGTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGACCCAAGGGTTCAGTGGAGGCATGAAAGGATGCTCGGGGTCCAG  100

seq1  ACGG  104
      ||||
seq2  ACGG  104