BAC Information

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BAC

Clone NameB6Ng01-022E13
Chromosome7 (Build37)
Map Location 11,834,647 - 11,868,225
singlet/doubletdoublet
Overlap geneLOC675762
Upstream geneLOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931
Downstream geneZscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022E13.bB6Ng01-022E13.g
ACCDH854547DH854548
length556944
definitionDH854547|Mus musculus domesticus DNA, BAC clone: B6Ng01-022E13, 5' end.DH854548|Mus musculus domesticus DNA, BAC clone: B6Ng01-022E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,834,647 - 11,835,201)(11,867,672 - 11,868,225)
sequence
gaattctttattatcttgcccccatctcccaagtgctaggattgtagtgt
atgtgtttttaaagatatatttatttattctatgtacgtgagtacactgt
agctgaacagatggttgtgagccttcacgtggttgttgggaattgaattt
ttaggacttcctgctccctctggtcaacactgcttgctctggttggccct
gcttgctcagtccctgactgctccagtccaaagatttctttattattata
cataagtacactgtagctgacttcagatgcaccagaagagggcatcagat
ctcattatgggtggttgtgaaccaccatgtggttgctttgatttgaactt
agtcagtgctcttacccgttgagccatctcaccagtcatataactatgct
tgtgtatgagtgtgcacacttatgctgggatgcatagagctcagaggaca
gcttgcaggagttacttctccctaccactcatcctggggatgaagggctg
gcttggaggcaagtgtctgtcagcctgccctgctttttttggggtgtgtg
gggtat
gaattctttgtttagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatagcccggggctcgatt
cgagcggaagggacttgtgccccagatcaggcccgggtagcctgcttccc
tatgtactgcagactcaggttccgcgcgattggattggggcaggcgctgt
tattgaaaattttattcttaaatttttttattacttttatatttttacag
tccagttagtgccctctcattcccttaccccattcctcctccattgtcta
caagaggatatctccatcacctcctgcaatgccttctaactccctggggc
ctcaaatctctcaacgggtaggctcctcttctctcactgagacctgacca
gtcagtcctctgatgtatatgtgtccagaacctcagaacagctcaggtat
aaactgcctgtttggtggctcagtgtctgagagatcacaggggttagttg
agactgctggtctttctatgtgtttgcccttgtcctcagctattgtgtct
ggtcagcagatcacagcctgggttctagcctggaaaggcattttggaaac
ctggaagaaaagaggggctaggcgatgagagaaagaaatgcagttaagac
aggcattctgatcaaaagctcaattttacagttctgctcacagttatgaa
gcaggggaaggggcccaattcccgtcaaataatctcgaggtccagtagca
gggtgaccacgtgtatggctccaaacagcaaagcggcaggttccagcagt
gggcatggcagaacgattgagcgggaagcttccacccctgagccagctgg
tttcaggctgagagaggagactacatctcctcccttgttgtataaaaatg
aaaataatcccaaaaaaagaaagaaaggctggcctgtagcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11834647_11835201
seq2: B6Ng01-022E13.b_32_587

seq1  GAATTCTTTATTATCTTGCCCCCATCTCCCAAGTGCTAGGATTGTAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTATCTTGCCCCCATCTCCCAAGTGCTAGGATTGTAGTGT  50

seq1  ATGTGTTTTTAAAGATATATATATTTATTCTATGTACGTGAGTACACTGT  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGTGTTTTTAAAGATATATTTATTTATTCTATGTACGTGAGTACACTGT  100

seq1  AGCTGAACAGATGGTTGTGAGCCTTCACGTGGTTGTTGGGAATTGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACAGATGGTTGTGAGCCTTCACGTGGTTGTTGGGAATTGAATTT  150

seq1  TTAGGATTTCCTGCTCCCTCTGGTCAACACTGCTTGCTCTGGTTGGCCCC  200
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TTAGGACTTCCTGCTCCCTCTGGTCAACACTGCTTGCTCTGGTTGGCCCT  200

seq1  GCTTGCTCAGTCCCTGACTGCTCCAGTCCAAAGATTTCTTTATTATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCAGTCCCTGACTGCTCCAGTCCAAAGATTTCTTTATTATTATA  250

seq1  CATAAGTACACTGTAGCTGACTTCAGATGCACCAGAAGAGGGCATCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTACACTGTAGCTGACTTCAGATGCACCAGAAGAGGGCATCAGAT  300

seq1  CTCATTATGGGTGGTTGTGAACCACCATGTGGTTGCTTTGATTTGAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATGGGTGGTTGTGAACCACCATGTGGTTGCTTTGATTTGAACTT  350

seq1  AGTCAGTGCTCTTACCCGTTGAGCCATCTCACCAGTCCTATAACTATGCT  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTCAGTGCTCTTACCCGTTGAGCCATCTCACCAGTCATATAACTATGCT  400

seq1  TGTGTATGAGTGTGCACACTTATGCTGGGATGCATAAAGCTCAGAGGACA  450
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTGTATGAGTGTGCACACTTATGCTGGGATGCATAGAGCTCAGAGGACA  450

seq1  GCTTGCAGGAGTTACTTCTCCCTACCACTCATCCTGGGGATCAAGGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTTGCAGGAGTTACTTCTCCCTACCACTCATCCTGGGGATGAAGGGCTG  500

seq1  GCTTGGAGGCAAGTGTCTGTCAGCCTGCCCTGCTTTTTTTGGGGTGTG-G  549
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTTGGAGGCAAGTGTCTGTCAGCCTGCCCTGCTTTTTTTGGGGTGTGTG  550

seq1  GGGTAT  555
      ||||||
seq2  GGGTAT  556

seq1: chr7_11867672_11868225
seq2: B6Ng01-022E13.g_465_1013 (reverse)

seq1  TTTTGCCTCAGGCCAGCCTTTTCTTTTTTTTTTTTCCTTATTATTTTCAT  50
      ||||||  |||||||||| ||||||| |||||||     |||||||||||
seq2  TTTTGCTACAGGCCAGCC-TTTCTTTCTTTTTTT--GGGATTATTTTCAT  47

seq1  TTTTATTAACAAC-AGGGCAGAGATGTAGTCTCCCCTCTCCCAGCCTGAT  99
      ||||||  ||||| ||||  ||||||||||||  |||||| |||||||| 
seq2  TTTTAT--ACAACAAGGGAGGAGATGTAGTCT--CCTCTCTCAGCCTGAA  93

seq1  ACCAGCTTGCTCAGGGGTGG-AGCTTCCCGCTCAATCGTTCTGCCATGCC  148
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  ACCAGCTGGCTCAGGGGTGGAAGCTTCCCGCTCAATCGTTCTGCCATGCC  143

seq1  CACTGCTGGAACCTGCCCCTTTGCTGTTTGGAGCCATACACGTGGTCACC  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACTGCTGGAACCTGCCGCTTTGCTGTTTGGAGCCATACACGTGGTCACC  193

seq1  CTGCTACTGGATCCCGAGATTATTTGGTGGGAATTGGGCCCCCTTCCCCT  248
      ||||||||||| | ||||||||||||  |||||||||| |||||||||||
seq2  CTGCTACTGGACCTCGAGATTATTTGACGGGAATTGGG-CCCCTTCCCCT  242

seq1  GCTTCATAACTGTGAGCAGAACTGTAAAATTGAGC-TTTGATCAGAATGC  297
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTTCATAACTGTGAGCAGAACTGTAAAATTGAGCTTTTGATCAGAATGC  292

seq1  CTGTCTTAACTGCATTCCTTTCTCTCATTGCCTAGCCCCTCTTCTCTTCC  347
      |||||||||||||||| ||||||||||| |||||||||||||| ||||||
seq2  CTGTCTTAACTGCATTTCTTTCTCTCATCGCCTAGCCCCTCTTTTCTTCC  342

seq1  AGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGCTGTGATCTGCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGCTGTGATCTGCTGA  392

seq1  CCAGACACAACAGCTGAGGACAAGGACAACCCCATAGAAAGACCAGCAGT  447
      |||||||||| |||||||||||||| ||| | ||||||||||||||||||
seq2  CCAGACACAATAGCTGAGGACAAGGGCAAACACATAGAAAGACCAGCAGT  442

seq1  CTCAACTAACCCCTGTAAACTCTCAGACACTGAGCCACCAAACAGGCAGT  497
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  CTCAACTAACCCCTGTGATCTCTCAGACACTGAGCCACCAAACAGGCAGT  492

seq1  TTATACCTGAGCTGTTCTGAGGTTCTGGACACATATACATCAGAGGACTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTGAGCTGTTCTGAGGTTCTGGACACATATACATCAGAGGACTG  542

seq1  ACTGGTC  554
      |||||||
seq2  ACTGGTC  549