BAC Information

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BAC

Clone NameB6Ng01-022E17
Chromosome7 (Build37)
Map Location 6,254,641 - 6,396,436
singlet/doubletdoublet
Overlap geneZfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344
Upstream geneNlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821
Downstream geneGA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022E17.bB6Ng01-022E17.g
ACCDH854555DH854556
length952249
definitionDH854555|Mus musculus domesticus DNA, BAC clone: B6Ng01-022E17, 5' end.DH854556|Mus musculus domesticus DNA, BAC clone: B6Ng01-022E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,395,483 - 6,396,436)(6,254,641 - 6,254,888)
sequence
gaattcccctgttcaccctctgtcttcatgtcataccatgtcatggcaca
cctctctacagaagccaaaaaaaaaaaagcaggttagtgtgtttagaaac
tttcccagaaccccaaaatcacacacacacactgtccatagcattttttt
ggatctagcattcaaattaaaattctaaactgaagtccttttttaacatc
tacagatttctgtttgtattaaaaatgtaagggaccagtgacgtgacttg
gctcagtgggtaaagactccagcagctgagcctgatgacacagtatggtc
ttcaggactcgtgtagtgtaaggaaagaaacaacttccataacttgtccc
ctgaaccccacatatataaccccacacacaaaataagtaattaattaatt
agctaattataaatgagtatgtaatagtacttctaagagaataatgggtc
tggagagatggctcagtagttaagagagtgctattcttgcagaagacctg
gtccagcaccacatcagatatcccacagatgcctggaactccagctccag
gagatctgatgccctctttcggcctcctcagctacctgcatgcgcaggtg
catacactttacagacacacacatacacacaattcactgtgaactaccca
acacatttcttcctctctaaactgagcacaaaagcattctctacttctgt
gacctatgtgtgatacccaaaataaaccatgcttataagtgattatctca
tctcatctcttgtctctatacaccatttttttaaaaaaatgacccctggc
cctttctaatgaaagaagtgagccccctatatctcagtgtgtgaacactt
ccagtgtactatagtgaaaaatattttcctgtgttctgtgatagcttcct
cacccaatatgggaaaagagaacacaacctttctccactgtaacctgatt
gt
agacatgacatcactgttatcagcacaagtaattattttcagccatttca
gactaatatgtcctactccaatttgatcactaaataatagattcattctt
tttagcttaatgtattactctgctttcttggagggttccccccccctctc
tctctttggtttttcgagacagggtttctctgtattgccctggctgtcct
ggaactcactttgtagaccaggctggcctctaactttttaaatccgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6395483_6396436
seq2: B6Ng01-022E17.b_43_994 (reverse)

seq1  ACAATCAGGTTACAGTGAGAAAAGGTTGTGTTCTCCTTTTCCCATATTGG  50
      |||||||||||||||||   |||||||||||||| |||||||||||||||
seq2  ACAATCAGGTTACAGTGGAGAAAGGTTGTGTTCT-CTTTTCCCATATTGG  49

seq1  GTGAGGAAGCATATCACAGAACACAGGAAAATATTTTTCACTATAGGTAC  100
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  GTGAGGAAGC-TATCACAGAACACAGGAAAATATTTTTCACTATA-GTAC  97

seq1  ACTGGAAGTGTTCACACACTGAGGTATAGGGGGCTCACTTCTTTCATTAG  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTGGAAGTGTTCACACACTGAGATATAGGGGGCTCACTTCTTTCATTAG  147

seq1  AAAGGGCCAGGGGTCATTTTTTT-AAAAAATGGTGTATAGAGAACAAGAG  199
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  AAAGGGCCAGGGGTCATTTTTTTAAAAAAATGGTGTATAGAG-ACAAGAG  196

seq1  ATGAGATGAGATAATCACTTATAAGCATGGTTTATTTTGGGTATCACACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGAGATAATCACTTATAAGCATGGTTTATTTTGGGTATCACACA  246

seq1  TAGGTCACAGAAGTAGAGAATGCTTTTGTGCTCAGTTTAGAGAGGAAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCACAGAAGTAGAGAATGCTTTTGTGCTCAGTTTAGAGAGGAAGAA  296

seq1  ATGTGTTGGGTAGTTCACAGTGAATTGTGTGTATGTGTGTGTCTGT-AAG  348
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTGTTGGGTAGTTCACAGTGAATTGTGTGTATGTGTGTGTCTGTAAAG  346

seq1  TGTATGCACCTGCGCATGCAGGTAGCTGAGGAGGCCGAAAGAGGGCATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCACCTGCGCATGCAGGTAGCTGAGGAGGCCGAAAGAGGGCATCA  396

seq1  GATCTCCTGGAGCTGGAGTTCCAGGCATCTGTGGGATATCTGATGTGGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTGGAGCTGGAGTTCCAGGCATCTGTGGGATATCTGATGTGGTG  446

seq1  CTGGACCAGGTCTTCTGCAAGAATAGCACTCTCTTAACTACTGAGCCATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCAGGTCTTCTGCAAGAATAGCACTCTCTTAACTACTGAGCCATC  496

seq1  TCTCCAGACCCATTATTCTCTTAGAAGTACTATTACATACTCATTTATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGACCCATTATTCTCTTAGAAGTACTATTACATACTCATTTATAA  546

seq1  TTAGCTAATTAATTAATTACTTATTTTGTGTGTGGGGTTATATATGTGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAATTAATTAATTACTTATTTTGTGTGTGGGGTTATATATGTGGG  596

seq1  GTTCAGGGGACAAGTTATGGAAGTTGTTTCTTTCCTTACACTACACGAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGGGACAAGTTATGGAAGTTGTTTCTTTCCTTACACTACACGAGT  646

seq1  CCTGAAGACCATACTGTGTCATCAGGCTCAGCTGCTGGAGTCTTTACCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGACCATACTGTGTCATCAGGCTCAGCTGCTGGAGTCTTTACCCA  696

seq1  CTGAGCCAAGTCACGTCACTGGTCCCTTACATTTTTAATACAAACAGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAAGTCACGTCACTGGTCCCTTACATTTTTAATACAAACAGAAA  746

seq1  TCTGTAGATGTTAAAAAAGGACTTCAGTTTAGAATTTTAATTTGAATGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGATGTTAAAAAAGGACTTCAGTTTAGAATTTTAATTTGAATGCT  796

seq1  AGATCCAAAAAAATGCTATGGACAGTGTGTGTGTGTGATTTTGGGGTTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAAAAAATGCTATGGACAGTGTGTGTGTGTGATTTTGGGGTTCT  846

seq1  GGGAAAGTTTCTAAACACACTAACCTGCTTTTTTTTTTTTGGCTTCTGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTTTCTAAACACACTAACCTGCTTTTTTTTTTTTGGCTTCTGTA  896

seq1  GAGAGGTGTGCCATGACATGGTATGACATGAAGACAGAGGGTGAACAGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGTGCCATGACATGGTATGACATGAAGACAGAGGGTGAACAGGG  946

seq1  GAATTC  954
      ||||||
seq2  GAATTC  952

seq1: chr7_6254641_6254888
seq2: B6Ng01-022E17.g_74_322

seq1  AGACATGACATCACTGTTATCAGCACAAGTAATTATTTTCAGCCATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGACATCACTGTTATCAGCACAAGTAATTATTTTCAGCCATTTCA  50

seq1  GACTAATATGTCCTACTCCAATTTGATCACTAAATAATAGATTCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATATGTCCTACTCCAATTTGATCACTAAATAATAGATTCATTCTT  100

seq1  TTTAGCTTAATGTATTACTCTGCTTTCTTGGAGGGTTCCCCCCCCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTAATGTATTACTCTGCTTTCTTGGAGGGTTCCCCCCCCCTCTC  150

seq1  TCTCTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCT  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTCTTTGGTTTTTCGAGACAGGGTTTCTCTGTATTGCCCTGGCTGTCCT  200

seq1  GGAACTCACTTTGTAGACCAGGCTGGCCTCGAAC-TCAGAAATCCGCCT  248
      |||||||||||||||||||||||||||||| ||| |   ||||||| ||
seq2  GGAACTCACTTTGTAGACCAGGCTGGCCTCTAACTTTTTAAATCCGTCT  249