BAC Information

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BAC

Clone NameB6Ng01-027I12
Chromosome7 (Build37)
Map Location 37,175,592 - 37,322,447
singlet/doubletdoublet
Overlap genenone
Upstream geneRhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027I12.bB6Ng01-027I12.g
ACCDH858249DH858250
length895866
definitionDH858249|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I12, 5' end.DH858250|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,321,540 - 37,322,447)(37,175,592 - 37,176,461)
sequence
gaattctggtgatctcacacacacacacccacacacacacacacacacac
acacacacacacacacacacacacacagacacagacacacacacacacac
acacacacacacacacagacacacacacacacacacacacacacacacag
acacacacacacacacacacagacacacacacacacacagacacacacac
acacacacacacacacacacacacacacacacacttcctggcttgaagct
ggctctaaggaggacgggagtccttggcttttagctatttcttttacgtg
gatcagacttttattttgacaccaagaagctcctggttcctgtgtggttt
aggggttcatttagattcatttttttttcttctctttgctttgttatgtg
atggtcaagtgtctcatttctctagtttgaggacggggcttcacatatgt
gatcctggatggctctctctggcaacacatgctttgtgtcacatgacagt
aaaatgacactttttaaaacatggctctcttgctaggtgtgagtggggct
taaggaatggccagatgcatgttctgtgggttggccaggagtcacctaga
ccctctggaagctgatgataggggagagaggatggcttccccacggttct
atggctcaactccaggctcccgggttctctgctttctactgcacaatcct
aagacagtgtgatttagttttttctatggttctggaatgaatcccaggac
ctctgcattgctagagaggtgctttatctctgagccacaccccagaccct
ctccgtagattcaaggcaagtgctctaccactaagctacctccctcactc
ttcatggttactctagctggtgctctatcacagaccacactccca
gaattcccaagccttgccacaggctctgtgctcctgcaggaaaatggcca
cacatctctaatatggagactcctatctggaggcttcttagtccagttag
tcagtgctttagaacaggaaggctttcctattctagaatacagatttgtt
tacaaggcctgccctcaactctttagacccagtactcccagagcacaagt
gtcttgccatcacaggttcacgtgtttgcacactgggtacccagcttgtg
gtgctttctgaaaggctgtaggacctctggggcctgagacctgacataaa
gaagtaggaagctgggactggcatttaacgttatatttgcttctggtcct
ggccttatttctccctttcctagtccaccaagacgtaagaagcactgtgt
cacacttgcacagcaatgtgggtggagccacccagatgtcatgtcttcct
caccaggattgacagcatcccctgaagctgtgagccaaaatgaacctccc
tgctttaagttgcttctgtcgtgtatttcgttattgaaacaagcaaagta
acacaggaaacacttctactgttaagactgtaaacacagtcaggtcttcc
agactaccgtggtcatgtgaaattttggaataagaaattgatattcattt
caaacaatatatacaatatataattacttacacacatacacacacacaca
cacacacacacacacacacacacacacacatggcatcagttcccactgag
tatatccttaaacagtacgtggtatctctggggaaatctttaaaactttt
aaaaatgtgttcattttccttattctgtacaggatgtgtggttgtgtgtg
gatatgtgatgtaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_37321540_37322447
seq2: B6Ng01-027I12.b_42_936 (reverse)

seq1  TGGGAGTGTGGCTCTGTGATATAGCACCAGGCTAGAGTTAACCAGTGAAG  50
      ||||||||||| ||||||||| ||||||| ||||||| |||||| |||||
seq2  TGGGAGTGTGG-TCTGTGATAGAGCACCA-GCTAGAG-TAACCA-TGAAG  46

seq1  AGTGAGGGAGGTAGCTTAGTGGTAGAGCACTTGCCTAGAATCTACCGGAG  100
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  AGTGAGGGAGGTAGCTTAGTGGTAGAGCACTTGCCTTGAATCTA-CGGAG  95

seq1  AGGGTCTGGGGTGTGGCTCAGAGATAAAGCACCTCTCTAGCAATGCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGGGGTGTGGCTCAGAGATAAAGCACCTCTCTAGCAATGCAGAG  145

seq1  GTCCTGGGATTCATTGCCAGAACCATAGAACAAAACTAAATCACACTGTC  200
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  GTCCTGGGATTCATT-CCAGAACCATAGAA-AAAACTAAATCACACTGTC  193

seq1  TTAGGATTGTGCAGTAGAAAGCAGAGAACCCGGGAGCCTGGAGTTGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTGTGCAGTAGAAAGCAGAGAACCCGGGAGCCTGGAGTTGAGCC  243

seq1  ATAGAACCGTGGGGAAGCCATCCTCTCTCCCCTATCATCAGCTTCCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACCGTGGGGAAGCCATCCTCTCTCCCCTATCATCAGCTTCCAGAG  293

seq1  GGTCTAGGTGACTCCTGGCCAACCCACAGAACATGCATCTGGCCATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGGTGACTCCTGGCCAACCCACAGAACATGCATCTGGCCATTCCT  343

seq1  TAAGCCCCACTCACACCTAGCAAGAGAGCCATGTTTTAAAAAGTGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCCACTCACACCTAGCAAGAGAGCCATGTTTTAAAAAGTGTCATT  393

seq1  TTACTGTCATGTGACACAAAGCATGTGTTGCCAGAGAGAGCCATCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCATGTGACACAAAGCATGTGTTGCCAGAGAGAGCCATCCAGGA  443

seq1  TCACATATGTGAAGCCCCGTCCTCAAACTAGAGAAATGTGACACTTGACC  500
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCACATATGTGAAGCCCCGTCCTCAAACTAGAGAAATGAGACACTTGACC  493

seq1  ATCACATAACAAAGCAAAGAGAAGAAAAAAAAATGAATCTAAATGAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATAACAAAGCAAAGAGAAGAAAAAAAAATGAATCTAAATGAACCC  543

seq1  CTAAACCACACAGGAACCAGGAGCTTCTTGGTGTCAAAATAAAAGTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCACACAGGAACCAGGAGCTTCTTGGTGTCAAAATAAAAGTCTGA  593

seq1  TCCACGTAAAAGAAATAGCTAAAAGCCAAGGACTCCCGTCCTCCTTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTAAAAGAAATAGCTAAAAGCCAAGGACTCCCGTCCTCCTTAGAG  643

seq1  CCAGCTTCAAGCCAGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCAAGCCAGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  693

seq1  GTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT  750
      |||||||||      ||| |||||||||||||||||||||||||||||||
seq2  GTGTGTGTG------TGTCTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT  737

seq1  GTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGT  787

seq1  GTGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTGTGTGTGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTGTGTGTGTGTGTGT  837

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGATCAC  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGTGTGTGTGTGAGATCAC  887

seq1  CAGAATTC  908
      ||||||||
seq2  CAGAATTC  895

seq1: chr7_37175592_37176461
seq2: B6Ng01-027I12.g_69_934

seq1  GAATTCCCAAGCCATGCCACAGGCTCTGTGCTCCTGCAGGAAAATGGCCA  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGCCTTGCCACAGGCTCTGTGCTCCTGCAGGAAAATGGCCA  50

seq1  CACATCTCTAATATGGAGACTCCTATCTGGAGGCTTCTTAGTCCAGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCTAATATGGAGACTCCTATCTGGAGGCTTCTTAGTCCAGTTAG  100

seq1  TCAGTGCTTTAGAACAGGAAGGCTTTCCTATTCTAGAATACAGATTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTTTAGAACAGGAAGGCTTTCCTATTCTAGAATACAGATTTGTT  150

seq1  TACAAGGCCTGCCCTCAACTCTTTAGACCCAGTACTCCCAGAGCACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGCCTGCCCTCAACTCTTTAGACCCAGTACTCCCAGAGCACAAGT  200

seq1  GTCTTGCCATCACAGGTTCACGTGTTTGCACACTGGGTACCCAGCTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCCATCACAGGTTCACGTGTTTGCACACTGGGTACCCAGCTTGTG  250

seq1  GTGCTTTCTGAAAGGCTGTAGGACCTCTGGGGCCTGAGACCTGACATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCTGAAAGGCTGTAGGACCTCTGGGGCCTGAGACCTGACATAAA  300

seq1  GAAGTAGGAAGCTGGGACTGGCATTTAACGTTATATTTGCTTCTGGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGAAGCTGGGACTGGCATTTAACGTTATATTTGCTTCTGGTCCT  350

seq1  GGCCTTATTTCTCCCTTTCCTAGTCCACCAAGACGTAAGAAGCACTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTATTTCTCCCTTTCCTAGTCCACCAAGACGTAAGAAGCACTGTGT  400

seq1  CACACTTGCACAGCAATGTGGGTGGAGCCACCCAGATGTCATGTCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGCACAGCAATGTGGGTGGAGCCACCCAGATGTCATGTCTTCCT  450

seq1  CACCAGGATTGACAGCATCCCCTGAAGCTGTGAGCCAAAATGAACCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGATTGACAGCATCCCCTGAAGCTGTGAGCCAAAATGAACCTCCC  500

seq1  TGCTTTAAGTTGCTTCTGTCGTGTATTTCGTTATTGAAACAAGCAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAGTTGCTTCTGTCGTGTATTTCGTTATTGAAACAAGCAAAGTA  550

seq1  ACACAGGAAACACTTCTACTGTTAAGACTGTAAACACAGTCAGGTCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAAACACTTCTACTGTTAAGACTGTAAACACAGTCAGGTCTTCC  600

seq1  AGACTACCGTGGTCATGTGAAATTTTGGAATAAGAAATTGATATTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACCGTGGTCATGTGAAATTTTGGAATAAGAAATTGATATTCATTT  650

seq1  CAAACAATATATACAATATATAATTACTTACACACATACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATATATACAATATATAATTACTTACACACATACACACACACACA  700

seq1  CACACACACACACACACACACACACACACATGGCATCAGTTCCCACTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATGGCATCAGTTCCCACTGAG  750

seq1  TATATCCTTAAACAGTACGTGGTATCTCTGGGGAAATCTTTTAAAAACTT  800
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TATATCCTTAAACAGTACGTGGTATCTCTGGGGAAATCTTT--AAAACTT  798

seq1  TTAAAAATGTGTTCATTTTCCTTATTCTGTACAGGTATGTGTGGCTGTGT  850
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  TTAAAAATGTGTTCATTTTCCTTATTCTGTACAGG-ATGTGTGGTTGTGT  847

seq1  GTGGATATGTGAATGTAAAG  870
      ||||||||||| ||||||||
seq2  GTGGATATGTG-ATGTAAAG  866