BAC Information

Click to search

BAC

Clone NameB6Ng01-029G17
Chromosome7 (Build37)
Map Location 38,745,444 - 38,917,217
singlet/doubletdoublet
Overlap geneC80913, Ccne1
Upstream geneLOC100043874, Zfp536, LOC100043453, EG627844
Downstream gene1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029G17.bB6Ng01-029G17.g
ACCDH859626DH859627
length1,166976
definitionDH859626|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G17, 5' end.DH859627|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,745,444 - 38,746,609)(38,916,244 - 38,917,217)
sequence
gaattcattaaagaagctataaataacctctaactatttagccgtgaata
gagggtggactggggttgatggcttattttagtactgatgcggaatgctt
tttaaaagctacattttagcatgcatcaagctaatgatcaacacttgcac
tgtaatggtcaacctgagactgaatgtctctttaaggagtttggctacaa
gtaaatataatataatatttctttctttctttttttttactggtaggaaa
gcatccttgaagaatgaaaatgtgaggaagattgaaatgtaaaacaaaca
aacaaacaaacaaaaggcctgtgctttaacaaagtgttaaagcatctaga
caaactttttccccccaaagaatggtgccaatgacaactgtgtgtatggg
gagaggaggtgctcgtgggacttgaaaactttgaaaatctgtggtgtggc
ctatacacaaatcaaagacattttatacacaatctaaaccaggaagttca
caacattttagaaaccaagtttcataaaaattttacttccaaaaaaaaaa
aagttgtacaaaatattcttcttctagtcaaattttcccaaagggtttgt
gtagctttttgccttaaagattacagtatgacattcaaaggaagaatttt
tcaaagaaccatacagctgtgaaacctacaagaaatgtagatttttttaa
agtgcctttaaaatgtaaaagcaagtaatataattgttgaatctatttga
gattttaaaagtgtctttaacatggtccatatggaaagcacaacatcaca
gctggtacgaaactgcctgtgtttagttgaaaacacacaaacaatatatg
acaggattctttgaaaagtaactcaaacgctatttcttgcatcctaaagg
ccaattagacagtagtcacagaataaacgaagccagcagaacattacagc
attcaaacatttactttgactttcccaatgccactgataaaaggtaaaaa
acttctgcccagccaagcaagacgccgttccaatttcatggtcggatccg
gcgcatgttctaaagcgcagtggagctgcagggcggaatcctcttgcttc
tctgctgcaatcggcagctctgaactttgaatcctttcttgtgggtttct
ctatacttctgatgga
gaattctcctgcctcagcatcctgagtactgggacctcaggcattcagac
attacacttagtgagttctttgtgaaaccctgtgggcccttctatgccca
acagttctcttgtttccacagggtctaggtttgaacttcttcccttggtg
ctcaaaccgaggtcacgttgcgtctttaactggtgcgagttgattgtaca
atggtgttttgaaagaacttgaaacggctgccaaggagtaaagttgtaga
agtggcatgaaaacagaagggtccctgcctctctgagaagcttagaatgt
ggatgatgctggggcctgtcaaggtccctgtgacaatactagaggggccc
aggcttcagtgccaccacggctgcacttcctgacacctgccacacagaag
gacaggggtagatcacctgctcccggttcactgcctgagttgctgggtgt
ctctggacatctggaaaatgagagcaggcgagagaaaggagatttttctg
gagactgcagagcatgggacctgagagtactcaggcttcaagtccatgga
cacatccctgagagcctaagagaacctcagtgcagatgcaggagagcagg
ggagaccccagagccacgcagaagtagaaggaaaaacaggatagagaagc
attgtgggtgctaacccattgtacaagaccagggacccccaaatatatgg
ttctatgtagaaaacatgcaatgccttgcatggtcacaagggggctcaaa
gttcagaacacagacttctctcagcacgcggatggtgtctagactcacac
acatgaaactaaaatgaagcaaaggctaccacgtatactccagggttgtg
gaattgggtcagcttcatagcatcacctgctcatgggaacctgtgatctc
tagagatgagggtgcacagtcagccctctgcagtctgaataatggtcgag
actccaactcacatgctggtgtccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_38745444_38746609
seq2: B6Ng01-029G17.b_41_1206

seq1  GAATTCATTAAAGAAGCTATAAATAACCTCTAACTATTTAGCCGTGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAGAAGCTATAAATAACCTCTAACTATTTAGCCGTGAATA  50

seq1  GAGGGTGGACTGGGGTTGATGGCTTATTTTAGTACTGATGCGGAATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGACTGGGGTTGATGGCTTATTTTAGTACTGATGCGGAATGCTT  100

seq1  TTTAAAAGCTACATTTTAGCATGCATCAAGCTAATGATCAACACTTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGCTACATTTTAGCATGCATCAAGCTAATGATCAACACTTGCAC  150

seq1  TGTAATGGTCAACCTGAGACTGAATGTCTCTTTAAGGAGTTTGGCTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGTCAACCTGAGACTGAATGTCTCTTTAAGGAGTTTGGCTACAA  200

seq1  GTAAATATAATATAATATTTCTTTCTTTCTTTTTTTTTACTGGTAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATAATATAATATTTCTTTCTTTCTTTTTTTTTACTGGTAGGAAA  250

seq1  GCATCCTTGAAGAATGAAAATGTGAGGAAGATTGAAATGTAAAACAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTGAAGAATGAAAATGTGAGGAAGATTGAAATGTAAAACAAACA  300

seq1  AACAAACAAACAAAAGGCCTGTGCTTTAACAAAGTGTTAAAGCATCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAGGCCTGTGCTTTAACAAAGTGTTAAAGCATCTAGA  350

seq1  CAAACTTTTTCCCCCCAAAGAATGGTGCCAATGACAACTGTGTGTATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTTTCCCCCCAAAGAATGGTGCCAATGACAACTGTGTGTATGGG  400

seq1  GAGAGGAGGTGCTCGTGGGACTTGAAAACTTTGAAAATCTGTGGTGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGTGCTCGTGGGACTTGAAAACTTTGAAAATCTGTGGTGTGGC  450

seq1  CTATACACAAATCAAAGACATTTTATACACAATCTAAACCAGGAAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACACAAATCAAAGACATTTTATACACAATCTAAACCAGGAAGTTCA  500

seq1  CAACATTTTAGAAACCAAGTTTCATAAAAATTTTACTTCCAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTTAGAAACCAAGTTTCATAAAAATTTTACTTCCAAAAAAAAAA  550

seq1  AAGTTGTACAAAATATTCTTCTTCTAGTCAAATTTTCCCAAAGGGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTACAAAATATTCTTCTTCTAGTCAAATTTTCCCAAAGGGTTTGT  600

seq1  GTAGCTTTTTGCCTTAAAGATTACAGTATGACATTCAAAGGAAGAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTTTGCCTTAAAGATTACAGTATGACATTCAAAGGAAGAATTTT  650

seq1  TCAAAGAACCATACAGCTGTGAAACCTACAAGAAATGTAGATTTTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAACCATACAGCTGTGAAACCTACAAGAAATGTAGATTTTTTTAA  700

seq1  AGTGCCTTTAAAATGTAAAAGCAAGTAATATAATTGTTGAATCTATTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTTAAAATGTAAAAGCAAGTAATATAATTGTTGAATCTATTTGA  750

seq1  GATTTTAAAAGTGTCTTTAACATGGTCCATATGGAAAGCACAACATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAAGTGTCTTTAACATGGTCCATATGGAAAGCACAACATCACA  800

seq1  GCTGGTACGAAACTGCCTGTGTTTAGTTGAAAACACACAAACAATATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTACGAAACTGCCTGTGTTTAGTTGAAAACACACAAACAATATATG  850

seq1  ACAGGATTCTTTGAAAAGTAACTCAAAACGCTA-TTCCTGCATCCT-AAG  898
      |||||||||||||||||||||||| |||||||| ||| |||||||| |||
seq2  ACAGGATTCTTTGAAAAGTAACTC-AAACGCTATTTCTTGCATCCTAAAG  899

seq1  GCCAATTAGACAGTAGTCACAGAATTAACGAAGCCAGCAGAACATTACAG  948
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCAATTAGACAGTAGTCACAGAATAAACGAAGCCAGCAGAACATTACAG  949

seq1  CATTCAAACATTTACTTTGACTTTCCCAATGCCACTGAT-AAAGGTGAGA  997
      ||||||||||||||||||||||||||||||||||||||| |||||| | |
seq2  CATTCAAACATTTACTTTGACTTTCCCAATGCCACTGATAAAAGGTAAAA  999

seq1  GAGCTCTGCCCAGCCAAGCAGGACGCCGTCCCAACTCCATGGCCGAATCC  1047
       |  |||||||||||||||| |||||||| |||| | ||||| || ||||
seq2  AACTTCTGCCCAGCCAAGCAAGACGCCGTTCCAATTTCATGGTCGGATCC  1049

seq1  GCCGCATGTCCTAAAGCGCAGCTGGAGCTGCA-GGCGGAGCCCTCTAGCT  1096
      | ||||||| ||||||||||| |||||||||| ||||||  ||||| |||
seq2  GGCGCATGTTCTAAAGCGCAG-TGGAGCTGCAGGGCGGAATCCTCTTGCT  1098

seq1  TCTCTGCTGCAATCGGGCAGCTCTGAACTTTGACACCCTCTTTGTGGGTT  1146
      |||||||||||||| ||||||||||||||||||  || |  |||||||||
seq2  TCTCTGCTGCAATC-GGCAGCTCTGAACTTTGAATCCTTTCTTGTGGGTT  1147

seq1  CCTCTGATACTTCTGATGGA  1166
       |||| ||||||||||||||
seq2  TCTCT-ATACTTCTGATGGA  1166

seq1: chr7_38916244_38917217
seq2: B6Ng01-029G17.g_64_1031 (reverse)

seq1  CAGCATGTGAGTTTGGGAGTCTCGACCATAATTCAGACTGCAGAGGGGCT  50
      |||||||||||||  |||||||||||||| |||||||||||||| |||||
seq2  CAGCATGTGAGTT--GGAGTCTCGACCATTATTCAGACTGCAGA-GGGCT  47

seq1  GGCTGTGCAACCCCTCATCTCTAGAGGTCACAGGTTCCCATGAGCAGGTG  100
      | |||||||  ||||||||||||||| |||||||||||||||||||||||
seq2  GACTGTGCA--CCCTCATCTCTAGAGATCACAGGTTCCCATGAGCAGGTG  95

seq1  ATGCCTATGAAGCTGACCCAACTCCCACAACCCTGGGGTATACGTGGTAG  150
      ||| ||||||||||||||||| | |||||||||||| |||||||||||||
seq2  ATG-CTATGAAGCTGACCCAA-TTCCACAACCCTGGAGTATACGTGGTAG  143

seq1  CCTTTGCTTCA-TTTAGTTTCATGTGTGTGAGTCTAGACACCATCCGCGT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTTCATTTTAGTTTCATGTGTGTGAGTCTAGACACCATCCGCGT  193

seq1  GCTGAGAGAAGTCTGTGTTCTGAACTTTGAGCCCCCTTGTGACCATGCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGAAGTCTGTGTTCTGAACTTTGAGCCCCCTTGTGACCATGCAA  243

seq1  GGCATTGCATGTTTTCTACATAGAACCATATATTTGGGGGTCCCTGGTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGCATGTTTTCTACATAGAACCATATATTTGGGGGTCCCTGGTCT  293

seq1  TGTACAATGGGTTAGCACCCACAATGCTTCTCTATCCTGTTTTTCCTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATGGGTTAGCACCCACAATGCTTCTCTATCCTGTTTTTCCTTCT  343

seq1  ACTTCTGCGTGGCTCTGGGGTCTCCCCTGCTCTCCTGCATCTGCACTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCGTGGCTCTGGGGTCTCCCCTGCTCTCCTGCATCTGCACTGAG  393

seq1  GTTCTCTTAGGCTCTCAGGGATGTGTCCATGGACTTGAAGCCTGAGTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTAGGCTCTCAGGGATGTGTCCATGGACTTGAAGCCTGAGTACT  443

seq1  CTCAGGTCCCATGCTCTGCAGTCTCCAGAAAAATCTCCTTTCTCTCGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCCCATGCTCTGCAGTCTCCAGAAAAATCTCCTTTCTCTCGCCT  493

seq1  GCTCTCATTTTCCAGATGTCCAGAGACACCCAGCAACTCAGGCAGTGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATTTTCCAGATGTCCAGAGACACCCAGCAACTCAGGCAGTGAAC  543

seq1  CGGGAGCAGGTGATCTACCCCTGTCCTTCTGTGTGGCAGGTGTCAGGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGCAGGTGATCTACCCCTGTCCTTCTGTGTGGCAGGTGTCAGGAAG  593

seq1  TGCAGCCGTGGTGGCACTGAAGCCTGGGCCCCTCTAGTATTGTCACAGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCGTGGTGGCACTGAAGCCTGGGCCCCTCTAGTATTGTCACAGGG  643

seq1  ACCTTGACAGGCCCCAGCATCATCCACATTCTAAGCTTCTCAGAGAGGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACAGGCCCCAGCATCATCCACATTCTAAGCTTCTCAGAGAGGCA  693

seq1  GGGACCCTTCTGTTTTCATGCCACTTCTACAACTTTACTCCTTGGCAGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCTTCTGTTTTCATGCCACTTCTACAACTTTACTCCTTGGCAGCC  743

seq1  GTTTCAAGTTCTTTCAAAACACCATTGTACAATCAACTCGCACCAGTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGTTCTTTCAAAACACCATTGTACAATCAACTCGCACCAGTTAA  793

seq1  AGACGCAACGTGACCTCGGTTTGAGCACCAAGGGAAGAAGTTCAAACCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCAACGTGACCTCGGTTTGAGCACCAAGGGAAGAAGTTCAAACCTA  843

seq1  GACCCTGTGGAAACAAGAGAACTGTTGGGCATAGAAGGGCCCACAGGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTGGAAACAAGAGAACTGTTGGGCATAGAAGGGCCCACAGGGTT  893

seq1  TCACAAAGAACTCACTAAGTGTAATGTCTGAATGCCTGAGGTCCCAGTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGAACTCACTAAGTGTAATGTCTGAATGCCTGAGGTCCCAGTAC  943

seq1  TCAGGATGCTGAGGCAGGAGAATTC  974
      |||||||||||||||||||||||||
seq2  TCAGGATGCTGAGGCAGGAGAATTC  968