BAC Information

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BAC

Clone NameB6Ng01-033I21
Chromosome10 (Build37)7 (Build37)
Map Location 122,236,997 - 122,238,065134,963,820 - 134,964,043
singlet/doubletsingletsinglet
Overlap genePpm1h
Upstream geneSrgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a
Downstream geneD630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033I21.bB6Ng01-033I21.g
ACCDH862570DH862571
length1,061862
definitionDH862570|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I21, 5' end.DH862571|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,236,997 - 122,238,065)(134,963,820 - 134,964,043)
sequence
gaattccagtcctgacttcctttggtaatgaacagcaatgtgtaaactat
aagcttgcttcttggtcatgatgttttgtgcaggaagagaaaccctaact
aagacaatagtctccttagctcctccttcacaagataatatccacttcaa
ctcctgtcaggacatcatggcaatcagatacacatctttgactgccagat
cgttacctgacccagtaccatcccccacccagcaaatgtgtgtggaagtg
gggttagcacgcaaacgtctactccttgaggcgtttgtctttccgttacc
cttggtcctgagtttggtttccgattgtacttctgctctacggtgctttc
agagtttctgaagttgatctaatcctttttgggacacagattcatagctg
gaatcctcactcccaggctcctctctcttagtcttcaccacatagcttga
gcaatacgaccttttgggacccgtgggttaaaacatacagtagagaccag
tggctttaccactactccacgaagtcacgcaatcgaatcgctctccctcc
tttcctgcctcacaacccgtggagtcacatgaccatggtctggtttcctc
tcacttgtgtgtcttcctgccacagtctctgcacccgctgttgctattgt
ctagcactgtgccctccccccttacagatgaacttctccgaagctctcaa
cctaggcctcacaggaccaagagcctcttcctgtaccgctgccctcgtgt
tgatttgggtgatttcgccctggattattaaaaaaaacaacccatgccta
tacctttttataactagtcttttatcatgccatctacaactgtgcctgtt
atatacatcttacacctgtgtgttttaggagcgttttaagacaggagccg
aactcacctactcattcatttccaccttctagtgctaggattacaggtgt
ctgccacaatgcctagctgcatgtgcaacgtcattgtgtggttctaactt
gagcttctagaagcttctggcaagggcggggaagatgcttttacctacca
ggctactaaaa
gaattcaagtactcatgcttatgtggatttaacctcatagacccatcttt
ccagccctcatcccactccttctgagacagggtcttgctgtatagttgag
actggcctaggacctgcaattatcctgtcttagcctcctaagtaccagaa
ttggaaacaatccaccacgcccatttttttttttaatttgtaaactaaac
tccttccgaaatatgtacataaggaagaatgtattccagagttcaatgct
atgtgtgtctttggacatccaatggggtcttggttaaatacccttaggag
attaacatcgtgttaatactttttcgattatcgtggatcgattaacttcg
tggatcctgaaactgaacagaaatgatgtccttagatgttttaccccact
tgtcaaagtatctttataagatggaacagcttacaagttaatttttttga
atagttttgtttttttcaagatttatttatttattatatgtaagtacact
gtagctgtcttcagacactccagaagagggcgtcagatcttgttacaggt
ggttgtgagccaccatgtggttgctgggatttgaactctggaccttcgga
agagcagtcgggtgctcctacccactgagccatctcaccagcccacaagt
tattttttttaaagagagagttgtacatagctcaggctggtcagctccat
cctgggctgggatacaggcatggactcttatgcccagctttatgtcttcg
tgagcacttgggatgctttgatgattaaagggagtcttaattctatctcc
aggtaagatacctcttgggagctcagccacaaacgagacatcgatgtctc
aagccctcccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_122236997_122238065
seq2: B6Ng01-033I21.b_46_1106

seq1  GAATTCCAGTCCTGACTTCCTTTGGTAATGAACAGCAATGTGTAAACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTGACTTCCTTTGGTAATGAACAGCAATGTGTAAACTAT  50

seq1  AAGCTTGCTTCTTGGTCATGATGTTTTGTGCAGGAAGAGAAACCCTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCTTCTTGGTCATGATGTTTTGTGCAGGAAGAGAAACCCTAACT  100

seq1  AAGACAATAGTCTCCTTAGCTCCTCCTTCACAAGATAATATCCACTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATAGTCTCCTTAGCTCCTCCTTCACAAGATAATATCCACTTCAA  150

seq1  CTCCTGTCAGGACATCATGGCAATCAGATACACATCTTTGACTGCCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCAGGACATCATGGCAATCAGATACACATCTTTGACTGCCAGAT  200

seq1  CGTTACCTGACCCAGTACCATCCCCCACCCAGCAAATGTGTGTGGAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACCTGACCCAGTACCATCCCCCACCCAGCAAATGTGTGTGGAAGTG  250

seq1  GGGTTAGCACGCAAACGTCTACTCCTTGAGGCGTTTGTCTTTCCGTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGCACGCAAACGTCTACTCCTTGAGGCGTTTGTCTTTCCGTTACC  300

seq1  CTTGGTCCTGAGTTTGGTTTCCGATTGTACTTCTGCTCTACGGTGCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCTGAGTTTGGTTTCCGATTGTACTTCTGCTCTACGGTGCTTTC  350

seq1  AGAGTTTCTGAAGTTGATCTAATCCTTTTTGGGACACAGATTCATAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCTGAAGTTGATCTAATCCTTTTTGGGACACAGATTCATAGCTG  400

seq1  GAATCCTCACTCCCAGGCTCCTCTCTCTTAGTCTTCACCACATAGCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTCACTCCCAGGCTCCTCTCTCTTAGTCTTCACCACATAGCTTGA  450

seq1  GCAATACGACCTTTTGGGACCCGTGGGTTAAAACATACAGTAGAGACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACGACCTTTTGGGACCCGTGGGTTAAAACATACAGTAGAGACCAG  500

seq1  TGGCTTTACCACTACTCCACGAAGTCACGCAATCGAATCGCTCTCCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTACCACTACTCCACGAAGTCACGCAATCGAATCGCTCTCCCTCC  550

seq1  TTTCCTGCCTCACAACCCGTGGAGTCACATGACCATGGTCTGGTTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCCTCACAACCCGTGGAGTCACATGACCATGGTCTGGTTTCCTC  600

seq1  TCACTTGTGTGTCTTCCTGCCACAGTCTCTGCACCCGCTGTTGCTATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTGTGTCTTCCTGCCACAGTCTCTGCACCCGCTGTTGCTATTGT  650

seq1  CTAGCACTGTGCCCTCCCCCCTTACAGATGAACTTCTCCGAAGCTCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTGTGCCCTCCCCCCTTACAGATGAACTTCTCCGAAGCTCTCAA  700

seq1  CCTAGGCCTCACAGGACCAAGAGCCTCTTCCTGTACCGCTGCCCTCGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCCTCACAGGACCAAGAGCCTCTTCCTGTACCGCTGCCCTCGTGT  750

seq1  TGATTTGGGTGATTTCGCCCTGGATTATTAAAAAAAACAACCCATGCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGGTGATTTCGCCCTGGATTATTAAAAAAAACAACCCATGCCTA  800

seq1  TACCTTTTTATAACTAGTCTTTTATCATGCCATCTACAACTGTGCCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTTATAACTAGTCTTTTATCATGCCATCTACAACTGTGCCTGTT  850

seq1  ATATACATCTTACACCTGTGTGTTTTAGGAGCGTTTTAAGACAGGAGCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATCTTACACCTGTGTGTTTTAGGAGCGTTTTAAGACAGGAGCCG  900

seq1  AACTCACCTACTCATTCATTTCCACCTTCTAGGTGCTAGGATTACAGGTG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACTCACCTACTCATTCATTTCCACCTTCTA-GTGCTAGGATTACAGGTG  949

seq1  TCTGCCACAATGCCTAGCTTGCATGTGCAACGTCATTGTGTGGTTCTACC  1000
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  TCTGCCACAATGCCTAGC-TGCATGTGCAACGTCATTGTGTGGTTCTAAC  998

seq1  TTGAAGCTTCTAGGAAGCCTCTGGCAGGGGCGGGGAAGATGGCTTTTAGC  1050
      ||| |||||||| ||||| ||||||| ||||||||||||| ||||||| |
seq2  TTG-AGCTTCTA-GAAGCTTCTGGCAAGGGCGGGGAAGAT-GCTTTTA-C  1044

seq1  CTAGCCAGGCTAGCTAAAA  1069
      ||| |||||||| ||||||
seq2  CTA-CCAGGCTA-CTAAAA  1061

seq1: chr7_134963820_134964043
seq2: B6Ng01-033I21.g_242_727 (reverse)

seq1  AAAAAAA--------GGGCTGGAGAGATGGCTCAGTGGGTAAGAGCACCC  42
      |||||||        ||||||| |||||||||||||||||| ||||||||
seq2  AAAAAAATAACTTGTGGGCTGGTGAGATGGCTCAGTGGGTAGGAGCACCC  50

seq1  GACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGG  92
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGG  100

seq1  CTCACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAA  142
      |||||||||| | ||||||||||||||| ||||||||||| |||||||||
seq2  CTCACAACCACCTGTAACAAGATCTGACGCCCTCTTCTGGAGTGTCTGAA  150

seq1  GACAGCTACAATGTACTCACATATAATAAATAAATAAATCTTTAAAAAAA  192
      |||||||||| |||||| |||||||||||||||||||||||| |||||||
seq2  GACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTGAAAAAAA  200

seq1  AAAAA------AAAAAAAAAAAATCTTAA-------------AAAAAAAA  223
       ||||      |||||||  || |  |||             | ||| | 
seq2  CAAAACTATTCAAAAAAATTAACTTGTAAGCTGTTCCATCTTATAAAGAT  250

seq1  A-------------------------------------------------  224
      |                                                 
seq2  ACTTTGACAAGTGGGGTAAAACATCTAAGGACATCATTTCTGTTCAGTTT  300

seq1  --------------------------------------------------  224
                                                        
seq2  CAGGATCCACGAAGTTAATCGATCCACGATAATCGAAAAAGTATTAACAC  350

seq1  --------------------------------------------------  224
                                                        
seq2  GATGTTAATCTCCTAAGGGTATTTAACCAAGACCCCATTGGATGTCCAAA  400

seq1  --------------------------------------------------  224
                                                        
seq2  GACACACATAGCATTGAACTCTGGAATACATTCTTCCTTATGTACATATT  450

seq1  ------------------------------------  224
                                          
seq2  TCGGAAGGAGTTTAGTTTACAAATTAAAAAAAAAAA  486