BAC Information

Click to search

BAC

Clone NameB6Ng01-036F18
Chromosome7 (Build37)
Map Location 20,820,259 - 20,943,663
singlet/doubletdoublet
Overlap geneLOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966
Upstream geneOpa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574
Downstream geneLOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006, LOC100043583, EG435953, LOC673902, EG667240, EG435951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036F18.bB6Ng01-036F18.g
ACCDH864559DH864560
length1,023892
definitionDH864559|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F18, 5' end.DH864560|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,942,632 - 20,943,663)(20,820,259 - 20,821,161)
sequence
gaattcacttacacaactttattattatgtacagtcttacatgttattcc
catacacattatttttaccatgttactattacataaggtaattcaactca
ttattttttatgctgcatttgtatattcttttaatttttattgattgtgt
tacatcccatttgaagcctcccctcccttccaattgtattgaattctgat
catggaatcacagactcaaactcgtctctttcatgtctgtattcatatgt
aaaactcacggtgtgttaaaatgtgtgttattgtattcctgatctactga
accaataaagacgtagcttcagtacaaaatgtatctcaaggcggagtaat
tcaaaaagtataaaataacattctgagttactgtacatgcattgttttcc
agacaatgttcctgtggtgtgatagaatagtgtctcgcttatcaagtgaa
gaaattgtctcaaatcaattggtaagtgtggacaatagaacagagcccag
agaagagtagtgacctacctaatcaagactctagggccctgtaaagccct
ctccatgtctgttcgtggtaaatccctgaaaacctctgaggaagtggctc
ttcagatcatttttgctttgccagtttggggttgggaccatggccaatga
ctttctgtttttccataatttctctccagtcttgactggttctaaacaga
ggcccagacaggtgatttttaagccacatggctgtgggccaatgccctga
ctctattcctcactgtatttccaaacaacatgatggctttcgctccagaa
accctccaacttgaactgaaatgtaaattaaaattcttcagtcacctgtt
gacaagaagcacaaatttgtgtccacctgtgtcctgaagtgtccatcagt
ttgtcactctgggtcctattagtagaggtaaactactcagaagcaagtgc
ccaatttggtgagttatcttgttacggttgttgttttcagtgctagtaca
tcacattcaataagtcactggtc
gaattcagaagacaattttcactgaagaaaatagaagagaattttaagca
gaagtctatggttggaagaatcccgccttctgagcctcagtcaggatgaa
gatgctcatctgaaaaccagctgcagagcacagctcctatagaagtatat
ttcctagtgcctggattgaggaaattctctgtgtcactctttgcctgaga
aagaatgcaatgaaatttagaatggtttcttattctccatgcaatgctgt
gaaggtaacccaacaaagtccaagtttccagtctcataaaataacagggc
agcgggacatgacatccttcagagagtttattattgtatcatctgtggca
tccgcacgtttgtctgcatggtgtctttgggatacctccaatgaaggaaa
aatcatttatccccagagcaaatctccattcctttctgatgcttactgat
gatgtctaggagtttgttagatgttaatgagtacctgggcagaagttagg
gaagggttttcatgtttcctttgggagaatctaagttctgaattgagttt
gtcatcagatgtgaattgggatgctccagggtagaacaagggactcattt
atgtgagtttctacagagtactttcctccctactattttactctttgcaa
aattatttctgacaccaagtcctcctcagaaaactggcaatgtatcagtc
agatcctgtaatttcccaggaaattgctttcattacaacttttcccatgt
ttgacccaggacattttaaaagtcaaatttataagtaagctgtctctctc
actgaatctggggttattccatatccacttttttcaggagatatgcctgt
ttctgaatatcatgaatcctttcacaggtctatatactttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20942632_20943663
seq2: B6Ng01-036F18.b_42_1064 (reverse)

seq1  GACCAGTGACTTTAATTGGAATGTGAATGTTACTTAAGACACTGAAAAAC  50
      ||||||||||||  ||| ||||||| ||| ||||  || |||||||||  
seq2  GACCAGTGACTT--ATT-GAATGTG-ATG-TACT--AG-CACTGAAAA--  40

seq1  CAACAACCGTAACAAGAATAACTCACCAAATTTGGGACACTTGC-TCTGA  99
      |||||||||||||||| |||||||||||||||  || ||||||| |||||
seq2  CAACAACCGTAACAAG-ATAACTCACCAAATT--GGGCACTTGCTTCTGA  87

seq1  GTAGTTTACCTCTACTAATAGGAACCAGAGTGACAAACTGATGGACAC-T  148
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  GTAGTTTACCTCTACTAATAGGACCCAGAGTGACAAACTGATGGACACTT  137

seq1  CAGGACACAGGTGGAACACAAATTTGTGCTTCTTGTCACCAGGTGACTGA  198
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  CAGGACACAGGTGG-ACACAAATTTGTGCTTCTTGTCAACAGGTGACTGA  186

seq1  AGAATTTTAATTTACATTTCAGTTC-AGTTGGAGGGTTTCTTGGAGCGAA  247
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  AGAATTTTAATTTACATTTCAGTTCAAGTTGGAGGGTTTC-TGGAGCGAA  235

seq1  AGCCATCATGTTGTTTGGAAATACAGTGAGGAATAGAGTCAAGGCATTGG  297
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCCATCATGTTGTTTGGAAATACAGTGAGGAATAGAGTCAGGGCATTGG  285

seq1  -CCACAGCCATGTGGCTT-AAAATCACCTGTCTGGGCCTCTGTTTAGAAC  345
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCACAGCCATGTGGCTTAAAAATCACCTGTCTGGGCCTCTGTTTAGAAC  335

seq1  CAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGTCATTGGCCATG  395
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGTCAAGACTGGAGAGAAATTATGGAAAAACAGAAAGTCATTGGCCATG  385

seq1  GTCCCAACCCCAAACTGGCAAAGC-AAAATGATCTGAAGAGCCACTTCCT  444
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCCCAACCCCAAACTGGCAAAGCAAAAATGATCTGAAGAGCCACTTCCT  435

seq1  CAGAGGTTTTCAGGGATTTACCACGAACAGACATGGAGAGGGCTTTACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTTTCAGGGATTTACCACGAACAGACATGGAGAGGGCTTTACAG  485

seq1  GGCCCTAGAGTCTTGATTAGGTAGGTCACTACTCTTCTCTGGGCTCTGTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTAGAGTCTTGATTAGGTAGGTCACTACTCTTCTCTGGGCTCTGTT  535

seq1  CTATTGTCCACACTTACCAATTGATTTGAGACAATTTCTTCACTTGATAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTCCACACTTACCAATTGATTTGAGACAATTTCTTCACTTGATAA  585

seq1  GCGAGACACTATTCTATCACACCACAGGAACATTGTCTGGAAAACAATGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGACACTATTCTATCACACCACAGGAACATTGTCTGGAAAACAATGC  635

seq1  ATGTACAGTAACTCAGAATGTTATTTTATACTTTTTGAATTACTCCGCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGTAACTCAGAATGTTATTTTATACTTTTTGAATTACTCCGCCT  685

seq1  TGAGATACATTTTGTACTGAAGCTACGTCTTTATTGGTTCAGTAGATCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACATTTTGTACTGAAGCTACGTCTTTATTGGTTCAGTAGATCAG  735

seq1  GAATACAATAACACACATTTTAACACACCGTGAGTTTTACATATGAATAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAATAACACACATTTTAACACACCGTGAGTTTTACATATGAATAC  785

seq1  AGACATGAAAGAGACGAGTTTGAGTCTGTGATTCCATGATCAGAATTCAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGAAAGAGACGAGTTTGAGTCTGTGATTCCATGATCAGAATTCAA  835

seq1  TACAATTGGAAGGGAGGGGAGGCTTCAAATGGGATGTAACACAATCAATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTGGAAGGGAGGGGAGGCTTCAAATGGGATGTAACACAATCAATA  885

seq1  AAAATTAAAAGAATATACAAATGCAGCATAAAAAATAATGAGTTGAATTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAAGAATATACAAATGCAGCATAAAAAATAATGAGTTGAATTA  935

seq1  CCTTATGTAATAGTAACATGGTAAAAATAATGTGTATGGGAATAACATGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTAATAGTAACATGGTAAAAATAATGTGTATGGGAATAACATGT  985

seq1  AAGACTGTACATAATAATAAAGTTGTGTAAGTGAATTC  1032
      ||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTACATAATAATAAAGTTGTGTAAGTGAATTC  1023

seq1: chr7_20820259_20821161
seq2: B6Ng01-036F18.g_67_958

seq1  GAATTCAGAAGACAATTTTCACTGAAGAAAATAGAAGAGAATTTTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGACAATTTTCACTGAAGAAAATAGAAGAGAATTTTAAGCA  50

seq1  GAAGTCTATGGTTGGAAGAATCCCGCCTTCTGAGCCTCAGTCAGGATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTATGGTTGGAAGAATCCCGCCTTCTGAGCCTCAGTCAGGATGAA  100

seq1  GATGCTCATCTGAAAACCAGCTGCAGAGCACAGCTCCTATAGAAGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCATCTGAAAACCAGCTGCAGAGCACAGCTCCTATAGAAGTATAT  150

seq1  TTCCTAGTGCCTGGATTGAGGAAATTCTCTGTGTCACTCTTTGCCTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTGCCTGGATTGAGGAAATTCTCTGTGTCACTCTTTGCCTGAGA  200

seq1  AAGAATGCAATGAAATTTAGAATGGTTTCTTATTCTCCATGCAATGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCAATGAAATTTAGAATGGTTTCTTATTCTCCATGCAATGCTGT  250

seq1  GAAGGTAACCCAACAAAGTCCAAGTTTCCAGTCTCATAAAATAACAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAACCCAACAAAGTCCAAGTTTCCAGTCTCATAAAATAACAGGGC  300

seq1  AGCGGGACATGACATCCTTCAGAGAGTTTATTATTGTATCATCTGTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGACATGACATCCTTCAGAGAGTTTATTATTGTATCATCTGTGGCA  350

seq1  TCCGCACGTTTGTCTGCATGGTGTCTTTGGGATACCTCCAATGAAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCACGTTTGTCTGCATGGTGTCTTTGGGATACCTCCAATGAAGGAAA  400

seq1  AATCATTTATCCCCAGAGCAAATCTCCATTCCTTTCTGATGCTTACTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTATCCCCAGAGCAAATCTCCATTCCTTTCTGATGCTTACTGAT  450

seq1  GATGTCTAGGAGTTTGTTAGATGTTAATGAGTACCTGGGCAGAAGTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTAGGAGTTTGTTAGATGTTAATGAGTACCTGGGCAGAAGTTAGG  500

seq1  GAAGGGTTTTCATGTTTCCTTTGGGAGAATCTAAGTTCTGAATTGAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTTTCATGTTTCCTTTGGGAGAATCTAAGTTCTGAATTGAGTTT  550

seq1  GTCATCAGATGTGAATTGGGATGCTCCAGGGTAGAACAAGGGACTCA-TT  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCATCAGATGTGAATTGGGATGCTCCAGGGTAGAACAAGGGACTCATTT  600

seq1  ATGTGAGTTTCTACAGAGTACTTTCCTCCCTACTATTTTACTC-TTGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGTGAGTTTCTACAGAGTACTTTCCTCCCTACTATTTTACTCTTTGCAA  650

seq1  AATTA-TTCTGACACCAAGTCCT-CTCAGAAAACTGGCAATGTATCAGTC  696
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATTATTTCTGACACCAAGTCCTCCTCAGAAAACTGGCAATGTATCAGTC  700

seq1  AGATTCTGTAATTTCCCAGGAAATTGC-TTCATTACAACTTTTCCCATGT  745
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGATCCTGTAATTTCCCAGGAAATTGCTTTCATTACAACTTTTCCCATGT  750

seq1  TTGACCCAGGACATTTATAAAAGTCAAATTTATTAAGTAAAGCTGGTCTC  795
      |||||||||||||||| ||||||||||||||| ||||| ||||| |||||
seq2  TTGACCCAGGACATTT-TAAAAGTCAAATTTA-TAAGT-AAGCT-GTCTC  796

seq1  TCTCACCTGAATCCTGGGGTTATTCCCATATCCACTTTTTTTCAGGTAGA  845
      ||||| |||||| ||||||||||| |||||||||| |||||||||| |||
seq2  TCTCA-CTGAAT-CTGGGGTTATT-CCATATCCAC-TTTTTTCAGG-AGA  841

seq1  TCATGCCTTGTTTTCTGATATACTCATGAATCCTTATCACAGGTCTAATA  895
      | ||||||   ||||||| ||| |||||||||||| |||||||||| |||
seq2  T-ATGCCT--GTTTCTGA-ATA-TCATGAATCCTT-TCACAGGTCT-ATA  884

seq1  TACTTTGG  903
      ||||||||
seq2  TACTTTGG  892