BAC Information

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BAC

Clone NameB6Ng01-038E15
Chromosome7 (Build37)
Map Location 15,737,464 - 15,738,607
singlet/doubletsinglet
Overlap geneLOC100042707
Upstream geneLOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702
Downstream geneLOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038E15.bB6Ng01-038E15.g
ACCDH865893DH865894
length1,1361,144
definitionDH865893|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E15, 5' end.DH865894|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccactttttaatggggatatttaatt
ttatgctggctgttggtttccatataattgcaatgtgtgtgcaatgaatt
cctaatatctgtatgacttataacaggaaaaggtgttgcatattttcaaa
gggttttaaggcatctaaaaatataagcatataattttttggagttaatt
tatatagtagattgtgttgatggatttttgtatactgaaccaccccttcc
ttcctgggaggaggcctacttgatcacagtgaatggcattttttaatgcg
ttctttaatttgttctgagagaattttattgagtagttttgtattgctat
tcctaagcaaatttggtctgaagttttctagtttgttggatctttgtatc
atttaggtatcagagtaaatgtggcttcatgcaatgaattaggtagtggt
ctttctgtttctgttttgtggaagagtttgatgagcattggtattagttc
ttttttgaaggtctggtagaattctgccataaaaccatctggtcctggga
tttctttagatgacaggctttgaatttcttcttctgtttcctcaggtgtt
atggaactctttagatattttatctcatgttgattaacactggtaggttg
tgtcagtctagaaaatgatcccatttcattttgattttccagttttgctg
catataggctttagaagcaagatctcatgattcattgaattttctcagtt
tctgtaatggctcctatttatatttttcttaactttgatactgtctctgt
gctctttagtcagttttgtcaaaaggtgtacttatctgtgaattttctcc
cagaaccatgtcccagttttgttgattctttgtatcgttcccttactttc
ttttttttttaattacgaattttcctcaatgacatttccagtgctatccc
aaagtcccctataccctcccccccacttcctacccacacattctcttttt
ttgggcctggcgttcctgtactggttttctacttcttatgtttaatccag
ccctgaggtggccatttcttcttttactgtctttcttggttggctattct
caaatgagggaataggaattaattagctcttctcgt
gaattcaactcttccctcattgatcaacccttggaagacatgtgtttcag
caagagccacattatctcggagcatccaaggcagaagtgtagagaacttt
ccagggaaccggggcacctatctagtgataggtctggctgttccaacgtt
ctttcctcaccttctccagcagccggtgctgaatcttcgtgtgacatacc
ctcgggattaagcctttctcctcaactcggacctccaagtatgacccaaa
actcagaatccaccttctccatgtgccagacaccatcagttttgagccct
cttcctgaactcagccccttgagtaattccctagaccagatggccatctt
ttccaaaattgatcaggtctgtgaaatctatcaaaagaatacaaggtcta
agaagcaaaggaaggagacagagaagaacacggtgcaaaatttgatgcat
ggccaggattcctgtgaaataactgaaagccctaaaggcactttctctct
gccaagctctgcctatcaggataccttggctgagagacagtctgtgttca
gttctcctccatgcagcccatcaagtacatctccagactcagaatccata
ttttctgcatgggaggaaatatgtcatgtcagctttcctcctcctttcag
cccaagtatgttctcagacccggagtcaaccttgtccattattcagatta
atgagaatttattaagtgatgccatgatgtctctataggctgagtgaaac
ccagcaacaggggagagtacggtctgtcaatcatcagtctgtgcactatc
tgcacaacctgctgcagatcaagatccagcaatagcccaaactccacatt
ccagcacagctttgacatctgggaatccaagggagaccattgctcaatac
acactcataggtgtttaagaccagactgctatacaagaccagctcttccc
tgtacatctcagtgacttggattctgtcccagaccaagtggtcactgtct
gacttccctggagcacttctgacttgtggatgccatctagaactgttgat
ccagaagtttggggcaactcctctcttcttctacaaggtgaagctttaaa
tctgggagactgattgttgaacacatggaggtagaaagccttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_15737464_15738607
seq2: B6Ng01-038E15.g_68_1211

seq1  GAATTCAACTCTCCCCTCATTGATCAACCCTTGGAAGACATGTGTTTCAG  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCTTCCCTCATTGATCAACCCTTGGAAGACATGTGTTTCAG  50

seq1  CAAGAGCCACATTATCTCGGAGCATCCAAGGCAGAAGTGTAGAGAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCCACATTATCTCGGAGCATCCAAGGCAGAAGTGTAGAGAACTTT  100

seq1  CCAGGGAACCGGGGCACCTATCTAGTGATAGGTCTGGCTGTTCCAACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAACCGGGGCACCTATCTAGTGATAGGTCTGGCTGTTCCAACGTT  150

seq1  CTTTCCTCACCTTCTCCAGCAGCCGGTGCTGAATCTTCGTGTGACATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCACCTTCTCCAGCAGCCGGTGCTGAATCTTCGTGTGACATACC  200

seq1  CTCGGGATTAAGCCTTTCTCCTCAACTCGGACCTCCAAGTATGACCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGATTAAGCCTTTCTCCTCAACTCGGACCTCCAAGTATGACCCAAA  250

seq1  ACTCAGAATCCACCTTCTCCATGTGCCAGACACCATCAGTTTTGAGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAATCCACCTTCTCCATGTGCCAGACACCATCAGTTTTGAGCCCT  300

seq1  CTTCCTGAACTCAGCCCCTTGAGTAATTCCCTAGACCAGATGGCCATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAACTCAGCCCCTTGAGTAATTCCCTAGACCAGATGGCCATCTT  350

seq1  TTCCAAAATTGATCAGGTCTGTGAAATCTATCAAAAGAATACAAGGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATTGATCAGGTCTGTGAAATCTATCAAAAGAATACAAGGTCTA  400

seq1  AGAAGCAAAGGAAGGAGACAGAGAAGAACACGGTGCAAAATTTGATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAAGGAAGGAGACAGAGAAGAACACGGTGCAAAATTTGATGCAT  450

seq1  GGCCAGGATTCCTGTGAAATAACTGAAAGCCCTAAAGGCACTGTCTCTCT  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCCAGGATTCCTGTGAAATAACTGAAAGCCCTAAAGGCACTTTCTCTCT  500

seq1  GCCAAGCTCTGCCTATCAGGATACCTTGGCTGAGAGACAGTCTGTGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTCTGCCTATCAGGATACCTTGGCTGAGAGACAGTCTGTGTTCA  550

seq1  GTTCTCCTCCATGCAGCCCATCAAGTACATCTCCAGACTCAGAATCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTCCATGCAGCCCATCAAGTACATCTCCAGACTCAGAATCCATA  600

seq1  TTTTCTGCATGGGAGGAAATATGTCATGTCAGCTTTCCTCCTCCTTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCATGGGAGGAAATATGTCATGTCAGCTTTCCTCCTCCTTTCAG  650

seq1  CCCAAGTATGTTCTCAGACCCGGAGTCAACCTTGTCCATTATTCAGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTATGTTCTCAGACCCGGAGTCAACCTTGTCCATTATTCAGATTA  700

seq1  ATGAGAATTTATTAAGTGATGCCATGATGTCTCTATAGGCTGAGTGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATTTATTAAGTGATGCCATGATGTCTCTATAGGCTGAGTGAAAC  750

seq1  CCAGCAACAGGGGAGAGTACGGTCTGTCAATCATCAGTCTGTGCACTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACAGGGGAGAGTACGGTCTGTCAATCATCAGTCTGTGCACTATC  800

seq1  TGCACAACCTGCTGCAGATCAAGATCCAGCAATAGCCCAAACTCCACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAACCTGCTGCAGATCAAGATCCAGCAATAGCCCAAACTCCACATT  850

seq1  CCAGCACAGCTTTGACATCTGGGAATCCAAGGGAGACCCATTGCTCAATA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGCACAGCTTTGACATCTGGGAATCCAAGGGAGA-CCATTGCTCAATA  899

seq1  CACACTCATAGGTGTTTAAGACCAGACTGCTATACAAGACCAGCTCTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCATAGGTGTTTAAGACCAGACTGCTATACAAGACCAGCTCTTCC  949

seq1  CTGTACATCTCAGTGACTTGGATTCTGTCCCAGACCAAGT-GTCACTGTC  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGTACATCTCAGTGACTTGGATTCTGTCCCAGACCAAGTGGTCACTGTC  999

seq1  TGACTTCCCT-GAGCACTTCTGACTTGTGGATGCCATCTAAGAACTGTTG  1048
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TGACTTCCCTGGAGCACTTCTGACTTGTGGATGCCATCT-AGAACTGTTG  1048

seq1  ATCCAGAAGTTTGGGGC-ACTCCTCTCTCCATCTACCAAAGTGAAAGCTT  1097
      ||||||||||||||||| |||||||||| | |||| ||| ||| ||||||
seq2  ATCCAGAAGTTTGGGGCAACTCCTCTCTTCTTCTA-CAAGGTG-AAGCTT  1096

seq1  TAAA-CTTGGAGACTGATTGTCTGAACACAT-GAGGTAGAAAGCTTTCA  1144
      |||| || ||||||||||||| ||||||||| |||||||||||| ||||
seq2  TAAATCTGGGAGACTGATTGT-TGAACACATGGAGGTAGAAAGCCTTCA  1144