BAC Information

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BAC

Clone NameB6Ng01-038H10
Chromosome7 (Build37)
Map Location 18,844,178 - 18,845,196
singlet/doubletsinglet
Overlap geneMill1
Upstream geneLOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190
Downstream genePsg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038H10.bB6Ng01-038H10.g
ACCDH866016DH866017
length1,1951,015
definitionDH866016|Mus musculus domesticus DNA, BAC clone: B6Ng01-038H10, 5' end.DH866017|Mus musculus domesticus DNA, BAC clone: B6Ng01-038H10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaccaacattcttctaatatgcaatgtagtctgctctacctgact
gtaatgaagattctaagtgtactttgccaagcttgccctgagatttctaa
ctgttatccagtaagaaagcattcaagaccctccacaatattgcagagac
aaatctggggcatctagctatgggaatgccaaggttccacgagactaatt
ttccgtgaaactctgcctcatgactgcttccaggcttttaggcctgctaa
gcaagtcactactggagtggttgtagcagtttttaactttaattactcta
gcagccatcttaattacaaatatgagttaaaaatcctgagcctgtgattg
aactgccaactgcagccaatggaacactgggagtttaactgtaattttta
agtttctcttgtagcaccagagtactgaaagatcctgacagaatgtaaaa
ggacacagaagccctgaaattggcaagatagatgtcagtgttagcagaac
tagcttcactgattcagaaaaatagaggtgcacaatgctctggccactcc
ttgaacctgtgtgtctgccaatgttttgactgttccttgacccatgcatg
tgcccactgatgaagcccattgccaggtgtttgtgatattggttgctgag
aaattgtcagaaaatctccccagcaaccacagcctggccaattcctgagt
tgctacacctacacaagaatctttccttgtacccctcccatacccatttc
ttgagaatagacattgtttagatctgggaaatcccctactctcccccttc
tcccttcccccatgagggcctataaaaactgggacctcttttcccctcga
gtcgactccactacccctgcgtgggatatgagtcatccccagagctctgg
ccttccccgaataaagcctcatgtggttgcaccaagctcagtctattgtg
gagttctgggtgtccgctattgtcctgaggcctgagtgaggggctctttc
gagtctttagtacacacttttaaaagtgtgatcatccattctcttaaacc
acactaggacagaccgggtagctagggtgcagagtgctgaccccaacagc
tatgcacaacacggcccaggatttagactcttggggaggtgaaccaagtg
tctgtcaatcatactgcgcggtctgagcatgcataattagtgagc
gaattctccagtgataaacagtgatatggaagtgtaagacaaataagccc
tttcttctccaacttgcttttttggtcccaatgggagagggggaaaccct
aactaagacatttagacatcaaaaaatgaaacatcgaaggaaaacgtggt
ctttagaatacagctgccccatgttttactcctttgttccctctcttcct
atttttaatctttaattaatttatttatttgctgtttttatggagtcctc
tatttattatttatttatttatttacactccagattctattccacacaca
catatcctggtccactctctttgagtacatcatcactgtcttcggacaca
caagaagacggcatcagattccattatggatggttgtgagctgccatgtg
gtccctgggcattgaactcaggacctctggaaaagcagccagtgctctta
accactgagtcatctctccagccctgcttcaactctttttaatctctata
tttatcattgccctactcactccggatgatttctcccatatccatgccct
gtatctgggtgccacttgtaacatacctgcaggaataagaatcccaaaca
gtggggtgatgagtgtgaggaccagggatgagaaataaagaaaatggaag
atagataatgtcaaagctataactgatgccttgtgccaatcaagtttatt
aagaagtacatcttattcattatttgcccgggaaaacagcccaggtcagc
agagagttagtcagacaatgttggagaaaagagcatgggatacgccagac
acagttgccttaggactgaaaatcatgggcacagagagaagagtgcagtc
ccctaaactgcaacctcatctcctcaaggcactggctcaactcttgctac
atccactcctggacaaagacacagagccaaactccctttgttcttccatc
agggccttaaggaaaaatggggtccactggctcttcaaagtataaattgt
cctgggctatctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_18844178_18845196
seq2: B6Ng01-038H10.g_67_1081

seq1  GAATTCTCCAGTGATAAACAGTGATATGGAAGTGTAAGACAAATAAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGTGATAAACAGTGATATGGAAGTGTAAGACAAATAAGCCC  50

seq1  TTTCTTCTCCAACTTGCTTTTTTGGTCCCAATGGGAGAGGGGGAAACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCCAACTTGCTTTTTTGGTCCCAATGGGAGAGGGGGAAACCCT  100

seq1  AACTAAGACATTTAGACATCAAAAAATGAAACATCGAAGGAAAACGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGACATTTAGACATCAAAAAATGAAACATCGAAGGAAAACGTGGT  150

seq1  CTTTAGAATACAGCTGCCCCATGTTTTACTCCTTTGTTCCCTCTCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAATACAGCTGCCCCATGTTTTACTCCTTTGTTCCCTCTCTTCCT  200

seq1  ATTTTTAATCTTTAATTAATTTATTTATTTGCTGTTTTTATGGAGTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATCTTTAATTAATTTATTTATTTGCTGTTTTTATGGAGTCCTC  250

seq1  TATTTATTATTTATTTATTTATTTACACTCCAGATTCTATTCCACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATTTATTTATTTATTTACACTCCAGATTCTATTCCACACACA  300

seq1  CATATCCTGGTCCACTCTCTTTGAGTACATCATCACTGTCTTCGGACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCTGGTCCACTCTCTTTGAGTACATCATCACTGTCTTCGGACACA  350

seq1  CAAGAAGACGGCATCAGATTCCATTATGGATGGTTGTGAGCTGCCATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGACGGCATCAGATTCCATTATGGATGGTTGTGAGCTGCCATGTG  400

seq1  GTCCCTGGGCATTGAACTCAGGACCTCTGGAAAAGCAGCCAGTGCTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGGCATTGAACTCAGGACCTCTGGAAAAGCAGCCAGTGCTCTTA  450

seq1  ACCACTGAGTCATCTCTCCAGCCCTGCTTCAACTCTTTTTAATCTCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGTCATCTCTCCAGCCCTGCTTCAACTCTTTTTAATCTCTATA  500

seq1  TTTATCATTGCCCTACTCACTCCGGATGATTTCTCCCATATCCATGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTGCCCTACTCACTCCGGATGATTTCTCCCATATCCATGCCCT  550

seq1  GTATCTGGGTGCCACTTGTAACATACCTGCAGGAATAAGAATCCCAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGGGTGCCACTTGTAACATACCTGCAGGAATAAGAATCCCAAACA  600

seq1  GTGGGGTGATGAGTGTGAGGACCAGGGATGAGAAATAAAGAAAATGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGATGAGTGTGAGGACCAGGGATGAGAAATAAAGAAAATGGAAG  650

seq1  ATAGATAATGTCAAAGCTATAACTGATGCCTTGTGCCAATCAAGTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAATGTCAAAGCTATAACTGATGCCTTGTGCCAATCAAGTTTATT  700

seq1  AAGAAGTACATCTTATTCATTATTTGCCCGGTAAAACAGCCAAGGTCAGC  750
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  AAGAAGTACATCTTATTCATTATTTGCCCGGGAAAACAGCCCAGGTCAGC  750

seq1  AGAGAGTTAAGTCAGACAATGTTGGAGAAAAGAGCATGGGATACGCCAGA  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTT-AGTCAGACAATGTTGGAGAAAAGAGCATGGGATACGCCAGA  799

seq1  CACAGTTGCCTTAGGACTGAAAATCAT-GGCACAGAGAGAAGAGTGCAGT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACAGTTGCCTTAGGACTGAAAATCATGGGCACAGAGAGAAGAGTGCAGT  849

seq1  CCCCAGAAACTGCAACCTCAACTCCTCAAGGCACTGGCTCAAC-CTTGCT  898
      ||||  |||||||||||||| |||||||||||||||||||||| ||||||
seq2  CCCC-TAAACTGCAACCTCATCTCCTCAAGGCACTGGCTCAACTCTTGCT  898

seq1  ACATCCACTCCTGGACAAGGACACAGAGCCAAACTTCCCTTTGTCCTTCC  948
      |||||||||||||||||| ||||||||||||||| ||||||||| |||||
seq2  ACATCCACTCCTGGACAAAGACACAGAGCCAAAC-TCCCTTTGTTCTTCC  947

seq1  ATCAGGGCCTCTAAGGAAGAATTGGGTCCACCTGGCTCTTCACAGTATTA  998
      |||||||||| ||||||| ||| ||||||| ||||||||||| |||| ||
seq2  ATCAGGGCCT-TAAGGAAAAATGGGGTCCA-CTGGCTCTTCAAAGTA-TA  994

seq1  TATTGTCCATGGCTATCTCCC  1019
       |||||||  |||||||||||
seq2  AATTGTCCTGGGCTATCTCCC  1015