BAC Information

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BAC

Clone NameB6Ng01-038I14
Chromosome7 (Build37)
Map Location 38,404,271 - 38,559,218
singlet/doubletdoublet
Overlap geneZfp536, LOC100043453
Upstream geneTshz3, LOC100043874
Downstream geneEG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038I14.bB6Ng01-038I14.g
ACCDH866070DH866071
length8041,143
definitionDH866070|Mus musculus domesticus DNA, BAC clone: B6Ng01-038I14, 5' end.DH866071|Mus musculus domesticus DNA, BAC clone: B6Ng01-038I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,558,416 - 38,559,218)(38,404,271 - 38,405,425)
sequence
gaattctctctctctctctctctctctctctctctctctctctctctctc
tccataatgacaccaggatcattatataatcccataacaaagaggctttt
gaggcacccgcttttgtcaactctaggacagagaattcttaattgcatta
ttcggcttcccccccatctttcccctctccatcactgaaatgcccacttt
gataccttggcttgtattatttacccaaacgttcgcctggaggaccagcc
ttgcaaagttgcctttaaaaaagttattttgtttcgtaattaagtctcgg
agcccaccgcgatgattattctggacccataaggcagagaacctgcatga
cgtttttctcgaagtttaattaccgtatgctaatttccttgcctactacg
tgattaattaaaatcatattttcataatcatttggcactagtattgtttt
agaattatcatgatctcctaaatagtgtctgtaaataaagtcgcctctaa
tggcaggcgcgggaggcgaggctgaggacctctcggtgtttgtatcgcgg
cgattggcaacataacggccttatttacattaaatacgccacaaggttac
agcgcggatcaacgtcattttgatcgctgatgactccctttaacgcccgg
gctgtgactgattctccacgtcccgctgtccaccgagattcacccgggag
tttttttttttcaccccagaaaagaaactgatttaaatagtttgaggagc
aggtaagaatttcgcttttcctctccccctttccgcgtcttttctctctc
ttct
gaattcacactttctattcttcaaaggcccacccccttttaatcctttta
aaactcggactgtggtggcttcatggccgccatgttcctggtggttgatg
gccccaatgttcccaacattgtgaggtgacttggtggggtggcccatttc
caggaatgacaccatgccacagcaacgcttagctccacgtgtgaattgct
atgcaggcgacaagtactgcctcaggctggctaattaggggcacggtcga
ctaattgggccccacaaagacagacaaaaggctgactgctggcagaaaag
aaatttctatttttagaaaaaggctttcccctgaagaatgccctcatacc
tagggctgtatgggagattgcttcttcttttgagggtcatcctgatggag
aggatctgtgtaggggaaatgaggaataactaagtctttgagaatgttgt
cctgtgctctcaatgtctcattgaccagctctatgccatgggccattcct
tagtagggtagagatgattcatccacagaacagcagcatcttcctagagg
attctggagggtaagatgaggcaaggctcagagcatggtacctggcttga
agcaaactattcagttccaaccattgttcctcaccccaggtacctctctc
ttcttcattcaccccaccagcctccatctcttctacctgatgagttagct
taacaaccatcccctccctgtccccaaacctggcctgccttctctagtcc
taagtcatgaacctctgcctccctttctcacacacagacctcccagctgt
ggtgtgacccctctccaacttccttcctcatcccctagtaagactcggca
gatagtgctctgcatactgagggtgtgccctagagggctcaaggaagaga
ccaggtgtgggtcctgggctgcagtcagtgcagaggcaagccctgtttca
ctggaaatgcacacagcaaagatcttgcacattgaaccctttcagctctc
ttctgagtctcaatgtggagagcccattccaccaaggaggaaaagaaatt
gttttcatattcttcctcagattgtcccgtgagttctgtcagagaatcat
gacctcatgctgggaatgtgaagatgttctctctcctagctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_38558416_38559218
seq2: B6Ng01-038I14.b_48_851 (reverse)

seq1  AGAGGAGAGAG-AGAGACGCGGAAAGGGGGAGAGGAAAACGCGTAATTCT  49
      ||| ||||||| | ||||||||||||||||||||||||| ||| ||||||
seq2  AGAAGAGAGAGAAAAGACGCGGAAAGGGGGAGAGGAAAA-GCGAAATTCT  49

seq1  TACCTGCTCCTCAAACTATTTAAAGTCTGTTTCTTTTCTGGGGTG-AAAA  98
      |||||||||||||||||||||||| || ||||||||||||||||| ||||
seq2  TACCTGCTCCTCAAACTATTTAAA-TCAGTTTCTTTTCTGGGGTGAAAAA  98

seq1  AAAAAACTCCCGGGTGAATCTCGGTGGACAGCGGGACGTGGAGAATCAGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTCCCGGGTGAATCTCGGTGGACAGCGGGACGTGGAGAATCAGT  148

seq1  CACAGCCCGGGCGTTTAAGGGAGTCATCAGCGATC-AAATGACGTTGATC  197
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  CACAGCCCGGGCGTTAAAGGGAGTCATCAGCGATCAAAATGACGTTGATC  198

seq1  CGCGCTGTAACCTTGTGGCGTATTTAATGTAAATAAGGCCGTTATGTTGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCTGTAACCTTGTGGCGTATTTAATGTAAATAAGGCCGTTATGTTGC  248

seq1  CAATCGCCGCGATACAAACACCGAGAGGTCCTCAGCCTCGCCTCCCGCGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCGCCGCGATACAAACACCGAGAGGTCCTCAGCCTCGCCTCCCGCGC  298

seq1  CTGCCATTAGAGGCGACTTTATTTACAGACACTATTTAGGAGATCATGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTAGAGGCGACTTTATTTACAGACACTATTTAGGAGATCATGAT  348

seq1  AATTCTAAAACAATACTAGTGCCAAATGATTATGAAAATATGATTTTAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAAACAATACTAGTGCCAAATGATTATGAAAATATGATTTTAAT  398

seq1  TAATCACGTAGTAGGCAAGGAAATTAGCATACGGTAATTAAACTTCGAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACGTAGTAGGCAAGGAAATTAGCATACGGTAATTAAACTTCGAGA  448

seq1  AAAACGTCATGCAGGTTCTCTGCCTTATGGGTCCAGAATAATCATCGCGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTCATGCAGGTTCTCTGCCTTATGGGTCCAGAATAATCATCGCGG  498

seq1  TGGGCTCCGAGACTTAATTACGAAACAAAATAACTTTTTTAAAGGCAACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCGAGACTTAATTACGAAACAAAATAACTTTTTTAAAGGCAACT  548

seq1  TTGCAAGGCTGGTCCTCCAGGCGAACGTTTGGGTAAATAATACAAGCCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGGCTGGTCCTCCAGGCGAACGTTTGGGTAAATAATACAAGCCAA  598

seq1  GGTATCAAAGTGGGCATTTCAGTGATGGAGAGGGGAAAGATGGGGGGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAAAGTGGGCATTTCAGTGATGGAGAGGGGAAAGATGGGGGGGAA  648

seq1  GCCGAATAATGCAATTAAGAATTCTCTGTCCTAGAGTTGACAAAAGCGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAATAATGCAATTAAGAATTCTCTGTCCTAGAGTTGACAAAAGCGGG  698

seq1  TGCCTCAAAAGCCTCTTTGTTATGGGATTATATAATGATCCTGGTGTCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAAAGCCTCTTTGTTATGGGATTATATAATGATCCTGGTGTCAT  748

seq1  TATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  798

seq1  GAATTC  803
      ||||||
seq2  GAATTC  804

seq1: chr7_38404271_38405425
seq2: B6Ng01-038I14.g_67_1209

seq1  GAATTCACACTTTCTATTCTTCAAAGGCCCACCCCCTTTTAATCCTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTTTCTATTCTTCAAAGGCCCACCCCCTTTTAATCCTTTTA  50

seq1  AAACTCGGACTGTGGTGGCTTCATGGCCGCCATGTTCCTGGTGGTTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGGACTGTGGTGGCTTCATGGCCGCCATGTTCCTGGTGGTTGATG  100

seq1  GCCCCAATGTTCCCAACATTGTGAGGTGACTTGGTGGGGTGGCCCATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAATGTTCCCAACATTGTGAGGTGACTTGGTGGGGTGGCCCATTTC  150

seq1  CAGGAATGACACCATGCCACAGCAACGCTTAGCTCCACGTGTGAATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGACACCATGCCACAGCAACGCTTAGCTCCACGTGTGAATTGCT  200

seq1  ATGCAGGCGACAAGTACTGCCTCAGGCTGGCTAATTAGGGGCACGGTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCGACAAGTACTGCCTCAGGCTGGCTAATTAGGGGCACGGTCGA  250

seq1  CTAATTGGGCCCCACAAAGACAGACAAAAGGCTGACTGCTGGCAGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGGGCCCCACAAAGACAGACAAAAGGCTGACTGCTGGCAGAAAAG  300

seq1  AAATTTCTATTTTTAGAAAAAGGCTTTCCCCTGAAGAATGCCCTCATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTATTTTTAGAAAAAGGCTTTCCCCTGAAGAATGCCCTCATACC  350

seq1  TAGGGCTGTATGGGAGATTGCTTCTTCTTTTGAGGGTCATCCTGATGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTGTATGGGAGATTGCTTCTTCTTTTGAGGGTCATCCTGATGGAG  400

seq1  AGGATCTGTGTAGGGGAAATGAGGAATAACTAAGTCTTTGAGAATGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGTGTAGGGGAAATGAGGAATAACTAAGTCTTTGAGAATGTTGT  450

seq1  CCTGTGCTCTCAATGTCTCATTGACCAGCTCTATGCCATGGGCCATTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTCTCAATGTCTCATTGACCAGCTCTATGCCATGGGCCATTCCT  500

seq1  TAGTAGGGTAGAGATGATTCATCCACAGAACAGCAGCATCTTCCTAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGGTAGAGATGATTCATCCACAGAACAGCAGCATCTTCCTAGAGG  550

seq1  ATTCTGGAGGGTAAGATGAGGCAAGGCTCAGAGCATGGTACCTGGCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAGGGTAAGATGAGGCAAGGCTCAGAGCATGGTACCTGGCTTGA  600

seq1  AGCAAACTATTCAGTTCCAACCATTGTTCCTCACCCCAGGTACCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTATTCAGTTCCAACCATTGTTCCTCACCCCAGGTACCTCTCTC  650

seq1  TTCTTCATTCACCCCACCAGCCTCCATCTCTTCTACCTGATGAGTTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTCACCCCACCAGCCTCCATCTCTTCTACCTGATGAGTTAGCT  700

seq1  TAACAACCATCCCCTCCCTGTCCCCAAACCTGGCCTGCCTTCTCTAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACCATCCCCTCCCTGTCCCCAAACCTGGCCTGCCTTCTCTAGTCC  750

seq1  TAAGTCATGAACCTCTGCCTCCCTTTCTCACACACAGACCTCCCAGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATGAACCTCTGCCTCCCTTTCTCACACACAGACCTCCCAGCTGT  800

seq1  GGTGTGACCCCTCTCCAACTTCCTTCCTCATCCCCTAGTAAGACTCGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGACCCCTCTCCAACTTCCTTCCTCATCCCCTAGTAAGACTCGGCA  850

seq1  GATAGTGCTCTGCATACTGAGGGTGTGCCCTAGAGGGCTCAAGGAAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGCTCTGCATACTGAGGGTGTGCCCTAGAGGGCTCAAGGAAGAGA  900

seq1  CCAGGTGTGGGTCCTGGGCTGCAGTCAGTGCAGAGGCAAGCCCTGTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGTGGGTCCTGGGCTGCAGTCAGTGCAGAGGCAAGCCCTGTTTCA  950

seq1  CTGGAAAATGCCACACAGCAAAAGATC-TGCACATTGAACCCTTTCAGCT  999
      |||| ||||| |||||||| ||||||| ||||||||||||||||||||||
seq2  CTGG-AAATG-CACACAGC-AAAGATCTTGCACATTGAACCCTTTCAGCT  997

seq1  CTCTCCTGAGTCTCAAATGTGGAGAGCCCCATCCACACAAAGGAGGAAAA  1049
      |||| ||||||||| ||||||||||||||  ||  ||| |||||||||||
seq2  CTCTTCTGAGTCTC-AATGTGGAGAGCCCATTC--CACCAAGGAGGAAAA  1044

seq1  GACATTGTCTCCATATTCTTCCTCAGTATTGTCACGTGAGTTCTGTTCAG  1099
      || ||||| | ||||||||||||||| |||||| ||||||||||| ||||
seq2  GAAATTGTTTTCATATTCTTCCTCAG-ATTGTCCCGTGAGTTCTG-TCAG  1092

seq1  AAGAATCCATGAACTCCATGCTTGGGATATGTAGATGGTTTCCTCTCT-C  1148
       ||||| ||||| || |||||| || || || |||||   | |||||| |
seq2  -AGAAT-CATGACCT-CATGCTGGGAATGTGAAGATG---TTCTCTCTCC  1136

seq1  TAGCTAT  1155
      |||||||
seq2  TAGCTAT  1143