BAC Information

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BAC

Clone NameB6Ng01-039O06
Chromosome7 (Build37)6 (Build37)
Map Location 149,596,609 - 149,596,65324,776,257 - 24,776,381
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd
Downstream geneSyt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039O06.bB6Ng01-039O06.g
ACCDH867026DH867027
length118964
definitionDH867026|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O06, 5' end.DH867027|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(149,596,609 - 149,596,653)(24,776,257 - 24,776,381)
sequence
attgtttttaatagtggagtagtacccacttgtataatgtaccacacttt
ctatatccattcctctgttgtagggcatctgggttttttggggttttgtt
tgtttggttggttggttg
gaattcctaatctttccaagacttttaacatgagggatgttgaattttat
caaatgtgttttcagcatttaatgaaatgatcatgctgtttttcctttga
gtttgtttatgtagtggattacattaatggatttccatatattgaatcat
ccctgcattcctgggataagcctacttgatcatggtgaaaggttgttttg
atgttttcttggattcagtgtgagaaatttattgagtatttttgtatcag
tattcataagggaaattggtctgaagttcttttcctttgttgggtctttg
tgtgtttttggtatcagcataactgtggcttcatagaacaaattgagtag
tgttgttccttctatttctattttgctgaatagtttgaagagcattggta
taaagtcttctttgaaggtctgataaaattccacactaaactcatctgta
cctgagcctccatcttatgcactgttctcaactttatcttccaagctcct
acacaacattcaacagaactcttaacactggattgatcttctggcccaaa
gttccaaagtccttccacagtccttcccaaaacatggtcaggttgtcata
ggaataccccactatgctggtaccaatttgtcttagtcaggctttctatt
cctgcacaaacatcatgaccaagaagcaggttggggaagaaagggtttat
tcggcttacacttccacattgctgttcatcatcaaggaagtcaggactgg
aactcaagcaggtcaggaagtaggagctgatgcagaggccatggagggat
gttacttactggcttgcttcccctagcttgctcagcttgctttcttatag
aacccaagactaccacccagagatggcaccacccacaaggggacctcccc
tttgatcactaattgagaaatgccttacagctggatctcatggaggcatt
ccccactgaagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_149596609_149596653
seq2: B6Ng01-039O06.b_115_168

seq1  CTGTTG---------TTGGTTTTTTTGGGTTTTGTTTGTTTGGTTGGTTG  41
      ||||||         | |||||||| ||||||||||||||||||||||||
seq2  CTGTTGTAGGGCATCTGGGTTTTTTGGGGTTTTGTTTGTTTGGTTGGTTG  50

seq1  GTTG  45
      ||||
seq2  GTTG  54

seq1: chr6_24776257_24776381
seq2: B6Ng01-039O06.g_69_492 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TATCAGACCTTCAAAGAAGACTTTATACCAATGCTCTTCAAACTATTCAG  50

seq1  --------------------------------------------------  0
                                                        
seq2  CAAAATAGAAATAGAAGGAACAACACTACTCAATTTGTTCTATGAAGCCA  100

seq1  --------------------------------------------------  0
                                                        
seq2  CAGTTATGCTGATACCAAAAACACACAAAGACCCAACAAAGGAAAAGAAC  150

seq1  --------------------------------------------------  0
                                                        
seq2  TTCAGACCAATTTCCCTTATGAATACTGATACAAAAATACTCAATAAATT  200

seq1  --------------------------------------------------  0
                                                        
seq2  TCTCACACTGAATCCAAGAAAACATCAAAACAACCTTTCACCATGATCAA  250

seq1  ----------------------------------TATCAGACCTTCAAAG  16
                                        |||  |    || |  
seq2  GTAGGCTTATCCCAGGAATGCAGGGATGATTCAATATATGGAAATCCATT  300

seq1  AAGATCTAATCCCAGTTC-TTCACAAACT------------------AT-  46
      |  || |||| ||| | | |  |||||||                  || 
seq2  A--ATGTAAT-CCACTACATAAACAAACTCAAAGGAAAAACAGCATGATC  347

seq1  TTCTCGTTAGATGCTGAGAGCGCATTTGACAAAAATCCAACACCCATTTA  96
       | || ||| ||||||| | | |||||||  ||||| ||||| ||  | |
seq2  ATTTCATTAAATGCTGAAAACACATTTGA-TAAAATTCAACATCC-CTCA  395

seq1  TGATAAAAGTCTTGGAAAGATCAGGAATT  125
      || |||||||||||||||||| |||||||
seq2  TGTTAAAAGTCTTGGAAAGATTAGGAATT  424