BAC Information

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BAC

Clone NameB6Ng01-040D10
Chromosome7 (Build37)
Map Location 5,805,111 - 5,805,723
singlet/doubletsinglet
Overlap genenone
Upstream geneIsoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647
Downstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040D10.bB6Ng01-040D10.g
ACCDH867252DH867253
length1,2701,088
definitionDH867252|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D10, 5' end.DH867253|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatagctaaacataatagaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagatggaagcaatgccactaaa
atcagggactagacaagtctgctcacttcctccctacccattcaatatag
tacttgaagtcctagacagagaaattagacaacaaaagaagatcaaggga
atacaaattggaaaggaagaagtccaaacatcactatttgcagatgatat
gatagtacacacacacacacacacacacacacacacacacacacacacac
aaacacatacacacaaacacacccacacagccacccacccacccacccac
cccccccacacacacaccacacacacacatatatatatgaccgtaataat
tccatcagggaactcctaaacctgataaacagcttcagttcagtagctgg
ataaaaaattaactcaacagatcagtggcttttctctacacaaaggtaaa
acaggcttagaaagaaattagggaaaaacaccctttacaatagtcagaaa
taatataaaataacttggtgtgactctaactatggaagtgaaagatctgt
atgataagaactttaagtctctgaagaaagaaatcaaagaagttcacagg
agatggaaagatctcccatgctcatggattggcaggattaaaatagtaaa
aatggctatctttctgtaagcaatctacagattcaatacaatccccatca
aaattccaactcaattcttccagagttagaaaggacaatttgcaaattta
tctggaataacaaaaacctaggataccaaaaactattctccacaataaag
aacctctggtggagtcactatgccttacctcaagctgtagaacagagcat
ttgtgataataactgcatggtatttgtatagtgaaagacaagtagttaaa
tggaatacattgaagacccagaatgacccccacacctatggtcacttgat
tctttgataaggagctaaaccatccagcagaaaaaatgacagcatcttca
caatggtgctggcttaacttgggggtttcatgtagaagatgcgatttgac
ctattcttattctctggactgagctaagtttagtgggatcaaggaatttc
ccattaaactggagactgaaactatagggaaaagtggaaagtccttagaa
ttgggccacgtaattccggttagaacccatggccttgtgctttatgaagt
agaaagttagcaacagtgac
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggactgggcaaagtg
ggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtatg
attcttacgtttacctttcgccatcttgcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagcaggcgtgggagacaagctctctcctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctctttcggagaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccggttgtctggagt
cgaagatgttgccgcctcagaagctctgtggctctcgcctagaaggtggc
ctgttgtctggagacgaagatggcgccgccccagaagctctgcgactctc
gcccgtcccagaaacggctggcctctgtattccacacggtcacccatgca
gcctgccctccgcggagtcctggagccaagaaggctcccgccggcgcctg
tgacacaaacctctcaggccgggcagacccccgtgctctcacgaggaagg
tggccggctgtctggagctgaagatggcgctgcctcagaagctctgtggc
tctcgcctagaaggtggcctgttgtctggagacgaagatggcgccgcctc
agaagctctgcgactctcgcccgtcccagaaacggctggcctctgtattc
cacacggtcacccatgcagcctgccctccgcggagtcctggagccaagaa
ggctcccgccggcgcctgtgacacaaacctctcagccgggcagaccccgt
gctctcaccaggaagtggctgctgtctggagctctcagctgagtttcttt
gtctctttttctttttgcatgtgtaggaaatgttgcttcatagtttttta
atggaaattttctttatttacatttcaattgtctaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5805111_5805723
seq2: B6Ng01-040D10.g_557_1158

seq1  GCCTAGAAGGTGGCCTGTTGTCTGGAGACGAAGATGGCGCCGCCCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAAGGTGGCCTGTTGTCTGGAGACGAAGATGGCGCCGCCCCAGAA  50

seq1  GCTCTGCGACTCTCGCCCGTCCCAGAAACGGCTGGCCTCTGTATTCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCGACTCTCGCCCGTCCCAGAAACGGCTGGCCTCTGTATTCCACA  100

seq1  CGGTCACCCATGCAGCCTGCCCTCCGCGGAGTCCTGGAGCCAAGAAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCACCCATGCAGCCTGCCCTCCGCGGAGTCCTGGAGCCAAGAAGGCT  150

seq1  CCCGCCGGCGCCTGTGACACAAACCTCTCAGGCCGGGCAGACCCCCGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCGGCGCCTGTGACACAAACCTCTCAGGCCGGGCAGACCCCCGTGC  200

seq1  TCTCACGAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCTGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCTGCCTC  250

seq1  AGAAGCTCTGTGGCTCTCGCCTAGAAGGTGGCCTGTTGTCTGGAGACGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCTGTGGCTCTCGCCTAGAAGGTGGCCTGTTGTCTGGAGACGAA  300

seq1  GATGGCGCCGCCCCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAACGGC  350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATGGCGCCGCCTCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAACGGC  350

seq1  TGGCCTCTGTATTCCACACGGTCACCCATGCAGCCTGCCCTCCGCGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTGTATTCCACACGGTCACCCATGCAGCCTGCCCTCCGCGGAGT  400

seq1  CCTGGAGCCAAGAAGGCTCCCGCCGGCGCCTGTGACACAAACCTCTCAGG  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTGGAGCCAAGAAGGCTCCCGCCGGCGCCTGTGACACAAACCTCTCA-G  449

seq1  CCGGGCAGACCCCCGTGCTCTCACCAGGAAGGTGGCTGGCTGTCTGGAGC  500
      ||||||||| |||||||||||||||||||| |||||| ||||||||||||
seq2  CCGGGCAGA-CCCCGTGCTCTCACCAGGAA-GTGGCT-GCTGTCTGGAGC  496

seq1  TCTCAGCTGAGTTTCTTTTGTCTCTTTTTCTTTTTTGCAATGTGTAGGAC  550
      ||||||||||||||| |||||||||||||| ||||||| |||||||||| 
seq2  TCTCAGCTGAGTTTC-TTTGTCTCTTTTTC-TTTTTGC-ATGTGTAGGAA  543

seq1  ATGTTTGCTTTCAATAGTTTTTTTAAATAGATATTTTCTTTATTTACATT  600
      ||| ||||||   ||||||||||  ||| || ||||||||||||||||||
seq2  ATG-TTGCTT--CATAGTTTTTT--AATGGAAATTTTCTTTATTTACATT  588

seq1  TCAAATG-CTACCC  613
      |||| || ||||||
seq2  TCAATTGTCTACCC  602