BAC Information

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BAC

Clone NameB6Ng01-040K21
Chromosome7 (Build37)
Map Location 5,343,396 - 5,525,162
singlet/doubletdoublet
Overlap geneV1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705
Upstream geneGp6, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350
Downstream geneLOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040K21.bB6Ng01-040K21.g
ACCDH867567DH867568
length1,098974
definitionDH867567|Mus musculus domesticus DNA, BAC clone: B6Ng01-040K21, 5' end.DH867568|Mus musculus domesticus DNA, BAC clone: B6Ng01-040K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,524,058 - 5,525,162)(5,343,396 - 5,344,105)
sequence
gaattcagtgtcacaaacatgagaagaagacattatctccagaaacattt
ctccaacaactaatttgtatttcttaatatactgttataacatgaggaaa
gatgttgaatgctaatgaagcaaaaatgcacttctgtctataaatgttca
tgtatcaatatgcagagaccataaaatttatgtcatgttgttgaccaaca
gagatggagttgcatcatatatacatctccttcataaaggaatttaaagt
aagataagtgtaaaattggtaatctagatcaatgtctacaaattgtcttc
cagacatagctcctgcagtgtcatatagttgttccacatttctttgggaa
aaggactccaaatcagttcaaagacttagataattgaggagacaattgaa
gacaggattgtcaaaattgatcattactccattgtctaatgaagccatct
ccatgctgtcccataataaaaccctgaaaaacaaggaggaaatggctcta
aatatatttttgctttgtcaggttggggttgggactgtggcaaatttcct
tctgttcatccataatttccctgtaattttgactgtcaacccacacccat
acaggacttagtaacaaacttagtggtggccagtgcattcaatctcatcc
tcttggcaattccaaacatcagtacagtatttcttccatggaaggccccc
agtgacctctcatgtaaactttggtacttcgtttgcctggtggctctaag
cacaaacttgtcttccacctgtgtcttgagcacctaccagtttgtcatac
ttcttcctggtaaatggagcagagtcatgctcagaggaagagtctttatc
tatcgtaaatcagataggggactaatatccattgtatataaggaactcaa
caggtggactccagaaaatcaaataaccccattaaaaaatggggctcaga
gctaaaaaagaattctcacctgaggaataccaaatggcagagaagcactg
gaaaaatgttcagcatccttatcatcaggaaatgcaagcaaacaactctg
agattccatctcaaccattcagcatggctagaatcaaaattcaggtga
gaattcatgttatcaggctacattgcaagcacttttaccctgagccatct
tacgtactccccccaaattattttattttatttttatttttttatgttct
ttaaccttctatttacttcccaagaataaaatcctatgatatatttacat
ttttttcatgcatggccttgtttcctgcaaaatttacttattcaaaatca
atggcagccaacaaatattaaatagaaaatatataaaaatattcatctcc
ttgggtactttctctagcttctccattgagggccctgtgttccatcttat
agatgactgcgagcatccacttctgtatttgccaggcactggcatcgcct
taccagagacagctgtatagagttctttcagcaaaatcttgctggcatat
gtaatagtatctccatttagtggcagattatgggatggattcctgggtga
ggcagtctcgggatggtccatcctttcgtctcagttccaaactttgtctc
tgtaaatccttccatgggtattttgttccgtattctaaaggaggaatgaa
gtatctatgcttttctctcccttctttctgattttcttgtgttttgcaaa
ttgtatcttgggtattctaagtttctgggctaatatccacttaccagtga
gtgtatatcaaatgagtttcttttgtgattgggttatctcactcaggatg
atatcctccagatccatccatttgcctaagaatttcataaattcattgtt
ttaatagctgggtagtactccattgtgtaaatgtatcacattttctgtat
ccattcctctgttgagggacatctgggttttcttccagcttctggctatt
acaaataaggctgctatgaacacagtgaagcatgtgttcttattaccagt
tggaacttcttctgggtatatgcccaggagaggtatggctggacattctg
gtagtactgtgttaatttagtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5524058_5525162
seq2: B6Ng01-040K21.b_47_1144 (reverse)

seq1  TCACCTGAATTTTTGATCTTAGCCATGCTGACTGGTGTGAGATGGAATCT  50
      ||||||||| |||||||  |||||||||||| |||| |||||||||||||
seq2  TCACCTGAA-TTTTGATTCTAGCCATGCTGAATGGT-TGAGATGGAATCT  48

seq1  CAGAGTTGTTTGCTTTGCATTTCCCTGATGATTAAGGATGCTGAACATTT  100
      ||||||||||||| |||||||| |||||||| ||||||||||||||||||
seq2  CAGAGTTGTTTGC-TTGCATTT-CCTGATGA-TAAGGATGCTGAACATTT  95

seq1  TTTCAGGTGCTTCTCTGCCATTTGGTATTCCTCAGGTGAGAATTCTTTTT  150
      || || ||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCCA-GTGCTTCTCTGCCATTTGGTATTCCTCAGGTGAGAATTC-TTTT  143

seq1  TTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCC  193

seq1  ACCTGTTGAGTTCCTTATATACAATGGATATTAGTCCCCTATCTGATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGAGTTCCTTATATACAATGGATATTAGTCCCCTATCTGATTTA  243

seq1  CGATAGATAAAGACTCTTCCTCTGAGCATGACTCTGCTCCATTTACCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGATAAAGACTCTTCCTCTGAGCATGACTCTGCTCCATTTACCAGG  293

seq1  AAGAAGTATGACAAACTGGTAGGTGCTCAAGACACAGGTGGAAGACAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTATGACAAACTGGTAGGTGCTCAAGACACAGGTGGAAGACAAGT  343

seq1  TTGTGCTTAGAGCCACCAGGCAAACGAAGTACCAAAGTTTACATGAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTAGAGCCACCAGGCAAACGAAGTACCAAAGTTTACATGAGAGG  393

seq1  TCACTGGGGGCCTTCCATGGAAGAAATACTGTACTGATGTTTGGAATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGGGCCTTCCATGGAAGAAATACTGTACTGATGTTTGGAATTGC  443

seq1  CAAGAGGATGAGATTGAATGCACTGGCCACCACTAAGTTTGTTACTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGATGAGATTGAATGCACTGGCCACCACTAAGTTTGTTACTAAGT  493

seq1  CCTGTATGGGTGTGGGTTGACAGTCAAAATTACAGGGAAATTATGGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGGGTGTGGGTTGACAGTCAAAATTACAGGGAAATTATGGATGA  543

seq1  ACAGAAGGAAATTTGCCACAGTCCCAACCCCAACCTGACAAAGCAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGAAATTTGCCACAGTCCCAACCCCAACCTGACAAAGCAAAAAT  593

seq1  ATATTTAGAGCCATTTCCTCCTTGTTTTTCAGGGTTTTATTATGGGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGAGCCATTTCCTCCTTGTTTTTCAGGGTTTTATTATGGGACAG  643

seq1  CATGGAGATGGCTTCATTAGACAATGGAGTAATGATCAATTTTGACAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGATGGCTTCATTAGACAATGGAGTAATGATCAATTTTGACAATC  693

seq1  CTGTCTTCAATTGTCTCCTCAATTATCTAAGTCTTTGAACTGATTTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCAATTGTCTCCTCAATTATCTAAGTCTTTGAACTGATTTGGAG  743

seq1  TCCTTTTCCCAAAGAAATGTGGAACAACTATATGACACTGCAGGAGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCCCAAAGAAATGTGGAACAACTATATGACACTGCAGGAGCTAT  793

seq1  GTCTGGAAGACAATTTGTAGACATTGATCTAGATTACCAATTTTACACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAAGACAATTTGTAGACATTGATCTAGATTACCAATTTTACACTT  843

seq1  ATCTTACTTTAAATTCCTTTATGAAGGAGATGTATATATGATGCAACTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTTTAAATTCCTTTATGAAGGAGATGTATATATGATGCAACTCC  893

seq1  ATCTCTGTTGGTCAACAACATGACATAAATTTTATGGTCTCTGCATATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTTGGTCAACAACATGACATAAATTTTATGGTCTCTGCATATTG  943

seq1  ATACATGAACATTTATAGACAGAAGTGCATTTTTGCTTCATTAGCATTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGAACATTTATAGACAGAAGTGCATTTTTGCTTCATTAGCATTCA  993

seq1  ACATCTTTCCTCATGTTATAACAGTATATTAAGAAATACAAATTAGTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTCCTCATGTTATAACAGTATATTAAGAAATACAAATTAGTTGT  1043

seq1  TGGAGAAATGTTTCTGGAGATAATGTCTTCTTCTCATGTTTGTGACACTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAATGTTTCTGGAGATAATGTCTTCTTCTCATGTTTGTGACACTG  1093

seq1  AATTC  1105
      |||||
seq2  AATTC  1098

seq1: chr7_5343396_5344105
seq2: B6Ng01-040K21.g_69_779

seq1  GAATTCATGTTATCAGGCTACATTGCAAGCACTTTTACCCTGAGCCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTATCAGGCTACATTGCAAGCACTTTTACCCTGAGCCATCT  50

seq1  TACGTACTCCCCCCAAATTATTTTATTTTATTTTTATTTTTTTATGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTACTCCCCCCAAATTATTTTATTTTATTTTTATTTTTTTATGTTCT  100

seq1  TTAACCTTCTATTTACTTCCCAAGAATAAAATCCTATGATATATTTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTCTATTTACTTCCCAAGAATAAAATCCTATGATATATTTACAT  150

seq1  TTTTTTCATGCATGGCCTTGTTTCCTGCAAAATTTACTTATTCAAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCATGCATGGCCTTGTTTCCTGCAAAATTTACTTATTCAAAATCA  200

seq1  ATGGCAGCCAACAAATATTAAATAGAAAATATATAAAAATATTCATCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCCAACAAATATTAAATAGAAAATATATAAAAATATTCATCTCC  250

seq1  TTGGGTACTTTCTCTAGCTTCTCCATTGAGGGCCCTGTGTTCCATCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTACTTTCTCTAGCTTCTCCATTGAGGGCCCTGTGTTCCATCTTAT  300

seq1  AGATGACTGCGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATCGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTGCGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATCGCCT  350

seq1  TACCAGAGACAGCTGTATAGAGTTCTTTCAGCAAAATCTTGCTGGCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAGACAGCTGTATAGAGTTCTTTCAGCAAAATCTTGCTGGCATAT  400

seq1  GTAATAGTATCTCCATTTAGTGGCAGATTATGGGATGGATTCCTGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGTATCTCCATTTAGTGGCAGATTATGGGATGGATTCCTGGGTGA  450

seq1  GGCAGTCTCGGGATGGTCCATCCTTTCGTCTCAGTTCCAAACTTTGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCTCGGGATGGTCCATCCTTTCGTCTCAGTTCCAAACTTTGTCTC  500

seq1  TGTAAATCCTTCCATGGGTATTTTGTTCCGTATTCTAAAGGAGGAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATCCTTCCATGGGTATTTTGTTCCGTATTCTAAAGGAGGAATGAA  550

seq1  GTATCTATGCTTTTCTCTCCCTTCTTTCTGATTTTCTTGTGTTTTGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTATGCTTTTCTCTCCCTTCTTTCTGATTTTCTTGTGTTTTGCAAA  600

seq1  TTGTATCTTGGGTATTCTAAGTTTCTGGGCTAATATCCACTTACCAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTTGGGTATTCTAAGTTTCTGGGCTAATATCCACTTACCAGTGA  650

seq1  GTGTATATCAAATGAG-TTCTTTTGTGATTGGGTTATCTCACTCAGGATG  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTGTATATCAAATGAGTTTCTTTTGTGATTGGGTTATCTCACTCAGGATG  700

seq1  ATATCCTCCAG  710
      |||||||||||
seq2  ATATCCTCCAG  711