BAC Information

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BAC

Clone NameB6Ng01-043A01
Chromosome7 (Build37)
Map Location 25,288,632 - 25,440,275
singlet/doubletdoublet
Overlap geneCadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3
Upstream geneEG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur
Downstream geneLOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043A01.bB6Ng01-043A01.g
ACCDH869198DH869199
length268694
definitionDH869198|Mus musculus domesticus DNA, BAC clone: B6Ng01-043A01, 5' end.DH869199|Mus musculus domesticus DNA, BAC clone: B6Ng01-043A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,288,632 - 25,288,899)(25,439,582 - 25,440,275)
sequence
ttcatttgaccctactcccccaccgccagctgcaaggagccagcaaagac
attgaccagagtccgggatgggatggtggtcttctcccccactagctaac
acctcggcgcttgggcaggggttgggggtgttggatgcctggatctctcc
cagggccaaaggctagggtccagagacttgggatcccctatggagacagg
gacttaaggaccctcctagacccccagtcctgggacgggtaataaggatt
tgggttgggggaagaaaa
gaattcctgatccacccgcctgtttcccaggtgcgaagacgctgccccca
ggcttagctgaatacatttttctaggagacaaacccatctctcctccctt
ctttcccatccctccacccacctcttactgtttaaggctagcaagattgt
tctgtcactacgatccttggagctcctcacactttatataaagaaataag
aaataaaatgctaaaatcccgcgttcacagaaaacaaagccctcctgagc
atgttgctgcataggagtgacggtcgggggaggcacaagtggagcaaggg
caggagatgctggtttgaggaggtgtcatggcgcccactcagagaagtct
ttcgcagggaaggaagctgtatggggtggagaaagggggctgtccacaca
aagactgactctgacgcctctacacaaaacaaaacaaaacaaaacaaaac
aaaacaaaacaaaacaaagcaaaacaaagtctctcagcactcaggaggca
gagccaggcagatttctgtgagttcaaggccagcctggtctacagagtga
attctaggatagccaggactacacagagaaacctcatttagtgtatgtgt
gaaaggggggtagggaagacaaattttaaaatgaaaaatattttagccat
gtgatggtggagacagagacaaataaatctctgagttcagggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25288632_25288899
seq2: B6Ng01-043A01.b_47_314

seq1  TTCATTTGACCCTACTCCCCCACCGCCAGCTGCAAGGAGCCAGCAAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGACCCTACTCCCCCACCGCCAGCTGCAAGGAGCCAGCAAAGAC  50

seq1  ATTGACCAGAGTCCGGGATGGGATGGTGGTCTTCTCCCCCACTAGCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCAGAGTCCGGGATGGGATGGTGGTCTTCTCCCCCACTAGCTAAC  100

seq1  ACCTCGGCGCTTGGGCAGGGGTTGGGGGTGTTGGATGCCTGGATCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGGCGCTTGGGCAGGGGTTGGGGGTGTTGGATGCCTGGATCTCTCC  150

seq1  CAGGGCCAAAGGCTAGGGTCCAGAGACTTGGGATCCCCTATGGAGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAAAGGCTAGGGTCCAGAGACTTGGGATCCCCTATGGAGACAGG  200

seq1  GACTTAAGGACCCTCCTAGACCCCCAGTCCTGGGACGGGTAATAAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAGGACCCTCCTAGACCCCCAGTCCTGGGACGGGTAATAAGGATT  250

seq1  TGGGTTGGGGGAAGAAAA  268
      ||||||||||||||||||
seq2  TGGGTTGGGGGAAGAAAA  268

seq1: chr7_25439582_25440275
seq2: B6Ng01-043A01.g_67_760 (reverse)

seq1  GGCCCTGAACTCAGAGATTTGTTTGTCTCTGTCTCCACCATCACATGGCT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCCCTGAACTCAGAGATTTATTTGTCTCTGTCTCCACCATCACATGGCT  50

seq1  AAAATATTTTTCATTTTAAAATTTGTCTTCCCTACCCCCCTTTCACACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTTCATTTTAAAATTTGTCTTCCCTACCCCCCTTTCACACAT  100

seq1  ACACTAAATGAGGTTTCTCTGTGTAGTCCTGGCTATCCTAGAATTCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAATGAGGTTTCTCTGTGTAGTCCTGGCTATCCTAGAATTCACTC  150

seq1  TGTAGACCAGGCTGGCCTTGAACTCACAGAAATCTGCCTGGCTCTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTTGAACTCACAGAAATCTGCCTGGCTCTGCCTC  200

seq1  CTGAGTGCTGAGAGACTTTGTTTTGCTTTGTTTTGTTTTGTTTTGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCTGAGAGACTTTGTTTTGCTTTGTTTTGTTTTGTTTTGTTTTG  250

seq1  TTTTGTTTTGTTTTGTTTTGTGTAGAGGCGTCAGAGTCAGTCTTTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTGTGTAGAGGCGTCAGAGTCAGTCTTTGTGTG  300

seq1  GACAGCCCCCTTTCTCCACCCCATACAGCTTCCTTCCCTGCGAAAGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCCCCTTTCTCCACCCCATACAGCTTCCTTCCCTGCGAAAGACTT  350

seq1  CTCTGAGTGGGCGCCATGACACCTCCTCAAACCAGCATCTCCTGCCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTGGGCGCCATGACACCTCCTCAAACCAGCATCTCCTGCCCTTG  400

seq1  CTCCACTTGTGCCTCCCCCGACCGTCACTCCTATGCAGCAACATGCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTGTGCCTCCCCCGACCGTCACTCCTATGCAGCAACATGCTCAG  450

seq1  GAGGGCTTTGTTTTCTGTGAACGCGGGATTTTAGCATTTTATTTCTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTTTGTTTTCTGTGAACGCGGGATTTTAGCATTTTATTTCTTATT  500

seq1  TCTTTATATAAAGTGTGAGGAGCTCCAAGGATCGTAGTGACAGAACAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATAAAGTGTGAGGAGCTCCAAGGATCGTAGTGACAGAACAATC  550

seq1  TTGCTAGCCTTAAACAGTAAGAGGTGGGTGGAGGGATGGGAAAGAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGCCTTAAACAGTAAGAGGTGGGTGGAGGGATGGGAAAGAAGGGA  600

seq1  GGAGAGATGGGTTTGTCTCCTAGAAAAATGTATTCAGCTAAGCCTGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGGTTTGTCTCCTAGAAAAATGTATTCAGCTAAGCCTGGGGG  650

seq1  CAGCGTCTTCGCACCTGGGAAACAGGCGGGTGGATCAGGAATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCTTCGCACCTGGGAAACAGGCGGGTGGATCAGGAATTC  694