BAC Information

Click to search

BAC

Clone NameB6Ng01-044M11
Chromosome7 (Build37)12 (Build37)
Map Location 104,009,556 - 104,009,70736,201,005 - 36,203,037
singlet/doubletsingletsinglet
Overlap geneOdz4
Upstream geneFrda-ps, EG666836, LOC670727, LOC666858
Downstream geneNars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044M11.bB6Ng01-044M11.g
ACCDH870436DH870437
length2031,133
definitionDH870436|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M11, 5' end.DH870437|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,009,556 - 104,009,707)(36,201,005 - 36,203,037)
sequence
gaattcagaaggagaaacagctaatatagatgagattggcctgccattct
acctgcaaatccttactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtatctatgtatgtgtctgattttgttcctctttctctctctctctctc
tctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgt
gaattcatgtcagtaccaataaaagaaaacaatagctcagcatctagata
cttggtttatttttgtacggctaatgagaaaccaaaggtatttgtcctgt
ttgctacagggcttgtattgagattagtaaccaatgcaattggacttagc
cagtctttcaggaggatttgcaagctctagaaataaagtgctagaagaga
atgtcaaaaaggaaccaagactcagggcaggtttaaaaggcatttcggaa
agtgtggagatggtgaacataagagcaagctcctcctaaggaatagctca
gagttttcgtcgtcggaagcccagcacttgacatgcacgataaatgggtt
cctgggaatggtcactggacgggatccactgcaagcagaccagacactat
ttctgttgtttagtccatagggaagcactaaggtaaatactgcacaaata
tgagtccagaaatagtatgtgctctccattcccagggtccccctacaaaa
catggctgtgctgtctcggaaagcttacattatgctcgcacttttcaagc
ctgaccgaatcattttaaccttttacaatgttttcccttgaagttttagt
atcataactattacactcccttcgtataatgcaagtctctgcactaatac
tctctcttctcacgtaggttgcttaacttgttaagaaatctactgaataa
ttccactgcttcctacctttagaatgtctctactcactcggtaatgacat
attgtcttgggactacaatctaagtcccatttaatttccaaaacaatctt
atggcactggtattgtttttttgatatactacgaactaagacataggaga
tgaagaaactccatcagagctgccaaagtttaagagtaaagccaggcagc
ctggagcttgctcccagtgtgaagggatgtggctccagttgtgcagggat
gtgctcccacttatgcagggatgtgttccaagtggtgcagggatgtgctc
ccactggtgcaggatggtgttcccagtgtgcagggatgtgctcccagtga
tggagggatggtgctccactgtgcagggatgtgcctcccatgtgcatgga
agttgctcccaatgtgaagagtatggctcccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104009556_104009707
seq2: B6Ng01-044M11.b_109_245 (reverse)

seq1  ACACACACACAAAACACACACACACACACACACACAGAGAGAGAGAGAGA  50
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  ACACACACAC---ACACACACACACACACACACACAGAGAGAGAGAGAGA  47

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAG--AGAGAGAGAGAGGTATAGATA  98
      |||||||||||||||||||||| ||||  | | |   |||   ||| |||
seq2  GAGAGAGAGAGAGAGAGAGAGAAAGAGGAACAAAATCAGACACATACATA  97

seq1  CACACACACACACACAGAGACAGAGAGAGGTACAGATACAAACACACACA  148
       | |||||||||||||               ||| | ||| |||||||||
seq2  GATACACACACACACA--------------CACACACACACACACACACA  133

seq1  CAGA  152
      ||||
seq2  CAGA  137

seq1: chr12_36201005_36203037
seq2: B6Ng01-044M11.g_70_1202

seq1  GAATTCATGTCAGTACCAATAAAAGAAAACAATAGCTCAGCATCTAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCAGTACCAATAAAAGAAAACAATAGCTCAGCATCTAGATA  50

seq1  CTTGGTTTATTTTTGTACGGCTAATGAGAAACCAAAGGTATTTGTCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTATTTTTGTACGGCTAATGAGAAACCAAAGGTATTTGTCCTGT  100

seq1  TTGCTACAGGGCTTGTATTGAGATTAGTAACCAATGCAATTGGACTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAGGGCTTGTATTGAGATTAGTAACCAATGCAATTGGACTTAGC  150

seq1  CAGTCTTTCAGGAGGATTTGCAAGCTCTAGAAATAAAGTGCTAGAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTCAGGAGGATTTGCAAGCTCTAGAAATAAAGTGCTAGAAGAGA  200

seq1  ATGTCAAAAAGGAACCAAGACTCAGGGCAGGTTTAAAAGGCATTTCGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAAAGGAACCAAGACTCAGGGCAGGTTTAAAAGGCATTTCGGAA  250

seq1  AGTGTGGAGATGGTGAACATAAGAGCAAGCTCCTCCTAAGGAATAGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAGATGGTGAACATAAGAGCAAGCTCCTCCTAAGGAATAGCTCA  300

seq1  GAGTTTTCGTCGTCGGAAGCCCAGCACTTGACATGCACGATAAATGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCGTCGTCGGAAGCCCAGCACTTGACATGCACGATAAATGGGTT  350

seq1  CCTGGGAATGGTCACTGGACGGGATCCACTGCAAGCAGACCAGACACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAATGGTCACTGGACGGGATCCACTGCAAGCAGACCAGACACTAT  400

seq1  TTCTGTTGTTTAGTCCATAGGGAAGCACTAAGGTAAATACTGCACAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGTTTAGTCCATAGGGAAGCACTAAGGTAAATACTGCACAAATA  450

seq1  TGAGTCCAGAAATAGTATGTGCTCTCCATTCCCAGGGTCCCCCTACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCAGAAATAGTATGTGCTCTCCATTCCCAGGGTCCCCCTACAAAA  500

seq1  CATGGCTGTGCTGTCTCGGAAAGCTTACATTATGCTCGCACTTTTCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGTGCTGTCTCGGAAAGCTTACATTATGCTCGCACTTTTCAAGC  550

seq1  CTGACCGAATCATTTTAACCTTTTACAATGTTTTCCCTTGAAGTTTTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCGAATCATTTTAACCTTTTACAATGTTTTCCCTTGAAGTTTTAGT  600

seq1  ATCATAACTATTACACTCCCTTCGTATAATGCAAGTCTCTGCACTAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAACTATTACACTCCCTTCGTATAATGCAAGTCTCTGCACTAATAC  650

seq1  TCTCTCTTCTCACGTAGGTTGCTTAACTTGTTAAGAAATCTACTGAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTCTCACGTAGGTTGCTTAACTTGTTAAGAAATCTACTGAATAA  700

seq1  TTCCACTGCTTCCTACCTTTAGAATGTCTCTACTCACTCGGTAATGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGCTTCCTACCTTTAGAATGTCTCTACTCACTCGGTAATGACAT  750

seq1  ATTGTCTTGGGACTACAATCTAAGTCCCATTTAATTTCCAAAACAATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTGGGACTACAATCTAAGTCCCATTTAATTTCCAAAACAATCTT  800

seq1  ATGGCACTGGTATTGTTTGTTTGATATACTACGAAACTAAGACATAGGAG  850
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  ATGGCACTGGTATTGTTTTTTTGATATACTACG-AACTAAGACATAGGAG  849

seq1  ATGAAGAAACTCCATCAGAGCTGCCAAAGTTTAAGAGGTAAAGCCAGGCA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGAAGAAACTCCATCAGAGCTGCCAAAGTTTAAGA-GTAAAGCCAGGCA  898

seq1  GCCTGGAGCTTGCTCCCAGTGTGAAGGGATGT-GCTCCCAGTGTGCAGGG  949
      |||||||||||||||||||||||||||||||| |||||   |||||||||
seq2  GCCTGGAGCTTGCTCCCAGTGTGAAGGGATGTGGCTCCAGTTGTGCAGGG  948

seq1  ATGTGCTCCCAC-TATGCAGGGATGTGTTCCAAGT-GTGCAGGGATGTGC  997
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  ATGTGCTCCCACTTATGCAGGGATGTGTTCCAAGTGGTGCAGGGATGTGC  998

seq1  TCCCACT-GTGCAGGGATGTGTTCCCAGTGTGCAGGGATGTGCTCCCAGT  1046
      ||||||| |||||||   ||||||||||||||||||||||||||||||||
seq2  TCCCACTGGTGCAGGATGGTGTTCCCAGTGTGCAGGGATGTGCTCCCAGT  1048

seq1  G-TGGAGGGAT-GTGCTCCCACTGTGCAGGGATGTG-CTCCCAGTGTGCA  1093
      | ||||||||| ||||| |||||||||||||||||| |||||| ||||||
seq2  GATGGAGGGATGGTGCT-CCACTGTGCAGGGATGTGCCTCCCA-TGTGCA  1096

seq1  GGGATG-TGCTCCCAGTGTGGAG-GGATGTGCTCCCAGTGTGCAGGGATG  1141
       ||| | |||||||| |||| || | ||| |||||||             
seq2  TGGAAGTTGCTCCCAATGTGAAGAGTATG-GCTCCCAC------------  1133

seq1  TGTTCCAAGTGTGAAGGGATGTGCTCCCACTGTGCAGGGATGTGTTCCAA  1191
                                                        
seq2  --------------------------------------------------  1133

seq1  GTGTGCAGGGATGTGCTCCCACTATGCAGGGATGTGTTCCAAGTGTGCAG  1241
                                                        
seq2  --------------------------------------------------  1133

seq1  GGATGTGCTCCCACTGTGCAGGGATGTGTTCCAAGTGTGCAGGGATGTGC  1291
                                                        
seq2  --------------------------------------------------  1133

seq1  TCCCAGTGTGGAGGGATGTGCTCCCAGTGTGCAGGGATGTGCTCCCAGTG  1341
                                                        
seq2  --------------------------------------------------  1133

seq1  TGCAGGGATGTGCTCCCAGTGTGGAGGGATGTGCTCCCAGTGTGCAGGGA  1391
                                                        
seq2  --------------------------------------------------  1133

seq1  TGTGTTCCAAGTGTGAAGGGATGTGCTCCCACTGTGCAGGGATGTGTTCC  1441
                                                        
seq2  --------------------------------------------------  1133

seq1  AAGTGTGCAGGGATGTGCTCCCACTGTGCAGGGATGTGTTCCAAGTGTGC  1491
                                                        
seq2  --------------------------------------------------  1133

seq1  AGGGATGTGCTTCCAGTGTGCAGGGATGTGCTCCCAGTGTGCAGGGATGT  1541
                                                        
seq2  --------------------------------------------------  1133

seq1  GCTCCCAGTGTGCAGGGATGTGCTCCAAGTGTGCAGGGATGTGCTCCCAG  1591
                                                        
seq2  --------------------------------------------------  1133

seq1  TGTGCAGGGATGTGCTCCCAGTGTGCAGGGATGTGCTCCCAGTGTGCAGG  1641
                                                        
seq2  --------------------------------------------------  1133

seq1  GATGTGCTCCCAGTGTGCAGGGATGTGCTCCCAGTGTGCAGGGATATGCT  1691
                                                        
seq2  --------------------------------------------------  1133

seq1  CCCAGTGTGCAGGGATGTGCTCCCAGTGTGGAGGTATGTGCTCCCAGTGT  1741
                                                        
seq2  --------------------------------------------------  1133

seq1  GGAGGGATGTGCTCCCAGTGTGGAGGGATGTGCTCCTACTGTGGAGGTAT  1791
                                                        
seq2  --------------------------------------------------  1133

seq1  GTGCTCCCAGTGTGGAGGGATGGTGCTCCTACTGTGCAGGGATGTGCTCC  1841
                                                        
seq2  --------------------------------------------------  1133

seq1  CACTGTGCAGGGATGTGTTCCAAGTGTGCAGGGATGTGCTCCCAGTGTGG  1891
                                                        
seq2  --------------------------------------------------  1133

seq1  AGGGATGTGCTTCCAGTGTGGAGGGATGTGCTCCCACTGTGCAGGGATGT  1941
                                                        
seq2  --------------------------------------------------  1133

seq1  GTTCCCAGTGTGCAGGAATGTGCTCCCACTGTGCAGGGATGTGCTCCCAG  1991
                                                        
seq2  --------------------------------------------------  1133

seq1  TGTGCAGGGATGTGCTCCCAGTGTGCAGGGATGTGCTCCCAC  2033
                                                
seq2  ------------------------------------------  1133