BAC Information

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BAC

Clone NameB6Ng01-045L20
Chromosome7 (Build37)
Map Location 106,810,348 - 106,964,579
singlet/doubletdoublet
Overlap geneSlco2b1, Olfr520, Olfr521, Neu3
Upstream geneLOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190
Downstream geneSpcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045L20.bB6Ng01-045L20.g
ACCDH871109DH871110
length1,0851,004
definitionDH871109|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L20, 5' end.DH871110|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,810,348 - 106,811,458)(106,963,552 - 106,964,579)
sequence
gaattctctaggtcgtacacttggagaggcccaacactgggacctggagg
catgcaccaggtccagtttccctagcactgtaacgctgtgacctgggata
tccagcaacgactggcttctcaacagtgcctatgactggcacttaggggt
tgctccctgtaagtcagtcctgtgctcagctcacttcacgcctgggaggt
gggcatgtcgccaggcctattctgcagataaggggactggcaagtgttga
ggactcaagtcacgacagccgcacgctcaattccctgcaggcatctgctc
cttccacattctctctcatgccagcctgatttattgattgccatcttcta
acttctaatattctttccttcttcctttctcttttattttattttatttt
attttattttattttattcttttcttttcttcctccttcttcttcttctt
cttttttcctgacacaagatctttctgtgtagttccagctgtcttgggga
cctaggacactttaatgacctcattccttcacctcttcccttgaatgtcc
caccctggctgttggtaggggctccttgtacccacccaccctgcctgctc
tgctgtcacctcaggatgagcatgaaggaaggtgtgtgggtgatgctggc
cagtcccgcccccaggctgaacaggacaatgaagggcagcaccaggcggc
tgcaggctgactcacaggaacctgcaggaacagtgccattccctgccaca
cagctgcagttggtgtagaagacctggggtgaggaaaaggagagagcctt
cagggcctccaagggtagtagccagccaagggcctgggcctaaggctgag
agctcccaagtttctacagccagtaaggcagagctggctgagcccagact
ctgacatgttgatctgtgatcatttgagtcagtaggtgcctgagacagtc
tgacttgtgctcacacactgagacagtctgactgagcacagctgtgaggc
agacctgtctctttgcagtactatgtgtttgatgtagctgcgacttcagc
aagatcactaatagtggcttaccaccctgtcttag
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
accctgcgggttataaaagcagcgccattttcccggttcggaatcttcct
gagaagcaagcaataaagctcttgtcgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaataactatatatgaacaaagggtc
attttcccccattaaacacaacctcatgtgttgggatacttacaattaca
agcgaagcgatcatgaaataccacttttaaaatgtttatgaagaaaagag
gtttatttatcttgctagtgaatcgccttgtgctttttctctcagtgtgt
ggtgctaggatccacccctgggatctacatggctaggcgtgtgctctacc
ccattctacatctccagacttttatttaatgaacacatagatcttgggat
aattttccagaattgagcatcctgtgaaaggataaatgtatctgcacaga
agagctcaactcttatactccaacccatacataaaggggcatatttatcc
acatttttttttaccaacaattaccaaactgtataatgtaaaaaaaatgt
taattgaaaattctattagtttaattcctattaatattttatgtgtaagg
ttgaacacctttttccccctccttctgtgacatgtctgattttgctcttt
gcccttttctattggcattctagaaatttaccaaatgctgcgtgagaagc
tcgagccttcgctgtggtgtgtggccaggcagtgtctcctttactgcctt
cgtagctctctcatgctctcatttggcaatgaggatgccatcacgtttgc
cagtgtctcacgatgtgataaggcagcttgggcagctgtcagactctgct
gagtctttatgctgctttccacatagtgcagagagaaaccctcgtctgag
cttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_106810348_106811458
seq2: B6Ng01-045L20.b_44_1128

seq1  GAATTCTCTAGGTCGTACACTTGGAGAGGCCCAACACTGGGACCTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGTCGTACACTTGGAGAGGCCCAACACTGGGACCTGGAGG  50

seq1  CATGCACCAGGTCCAGTTTCCCTAGCACTGTAACGCTGTGACCTGGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACCAGGTCCAGTTTCCCTAGCACTGTAACGCTGTGACCTGGGATA  100

seq1  TCCAGCAACGACTGGCTTCTCAACAGTGCCTATGACTGGCACTTAGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAACGACTGGCTTCTCAACAGTGCCTATGACTGGCACTTAGGGGT  150

seq1  TGCTCCCTGTAAGTCAGTCCTGTGCTCAGCTCACTTCACGCCTGGGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTGTAAGTCAGTCCTGTGCTCAGCTCACTTCACGCCTGGGAGGT  200

seq1  GGGCATGTCGCCAGGCCTATTCTGCAGATAAGGGGACTGGCAAGTGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTCGCCAGGCCTATTCTGCAGATAAGGGGACTGGCAAGTGTTGA  250

seq1  GGACTCAAGTCACGACAGCCGCACGCTCAATTCCCTGCAGGCATCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAGTCACGACAGCCGCACGCTCAATTCCCTGCAGGCATCTGCTC  300

seq1  CTTCCACATTCTCTCTCATGCCAGCCTGATTTATTGATTGCCATCTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACATTCTCTCTCATGCCAGCCTGATTTATTGATTGCCATCTTCTA  350

seq1  ACTTCTAATATTCTTTCCTTCTTCCTTTCTCTTTTATTTTATTTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAATATTCTTTCCTTCTTCCTTTCTCTTTTATTTTATTTTATTTT  400

seq1  ATTTTATTTTATTTTATTCTTTTCTTTTCTTCCTCCTTCTTCTTCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATTTTATTCTTTTCTTTTCTTCCTCCTTCTTCTTCTTCTT  450

seq1  CTTTTTTCCTGACACAAGATCTTTCTGTGTAGTTCCAGCTGTCTTGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCCTGACACAAGATCTTTCTGTGTAGTTCCAGCTGTCTTGGGGA  500

seq1  CCTAGGACACTTTAATGACCTCATTCCTTCACCTCTTCCCTTGAATGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACACTTTAATGACCTCATTCCTTCACCTCTTCCCTTGAATGTCC  550

seq1  CACCCTGGCTGTTGGTAGGGGCTCCTTGTACCCACCCACCCTGCCTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGGCTGTTGGTAGGGGCTCCTTGTACCCACCCACCCTGCCTGCTC  600

seq1  TGCTGTCACCTCAGGATGAGCATGAAGGAAGGTGTGTGGGTGATGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCACCTCAGGATGAGCATGAAGGAAGGTGTGTGGGTGATGCTGGC  650

seq1  CAGTCCCGCCCCCAGGCTGAACAGGACAATGAAGGGCAGCACCAGGCGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCGCCCCCAGGCTGAACAGGACAATGAAGGGCAGCACCAGGCGGC  700

seq1  TGCAGGCTGACTCACAGGAACCTGCAGGAACAGTGCCATTCCCTGCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTGACTCACAGGAACCTGCAGGAACAGTGCCATTCCCTGCCACA  750

seq1  CAGCTGCAGTTGGTGTAGAAGACCTGGGGTGAGGAAAAGGAGAAGAGCCT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGCTGCAGTTGGTGTAGAAGACCTGGGGTGAGGAAAAGGAG-AGAGCCT  799

seq1  TCAGGGGCCTCCAAGGGTAGTAGCCAGCCAAGGGCCTGGGCCTAAGGCCT  850
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCA-GGGCCTCCAAGGGTAGTAGCCAGCCAAGGGCCTGGGCCTAAGG-CT  847

seq1  GAGAGCTCCCAAGTTTCTACAGCCAGTAAGGCAGAGCTGGCTGGAGCCCC  900
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  GAGAGCTCCCAAGTTTCTACAGCCAGTAAGGCAGAGCTGGCT-GAG-CCC  895

seq1  AGACTCTGACCATTGGTTGATCTGTGATCATTTGAGTCAAGTAAGGTGCC  950
      ||||||||| |||  ||||||||||||||||||||||| ||| |||||||
seq2  AGACTCTGA-CAT--GTTGATCTGTGATCATTTGAGTC-AGT-AGGTGCC  940

seq1  TGGAGACAGTCTGAC-TGTGCTCACACACTGAGACAGTCTGACTGAGGCA  999
      | ||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  T-GAGACAGTCTGACTTGTGCTCACACACTGAGACAGTCTGACTGA-GCA  988

seq1  CAGCTGTGAGGCAGACACTGTCTCTCTGCCAGTACTAGTGTGTTTGATGG  1049
      |||||||||||||||| |||||||| || |||||||| |||||||||| |
seq2  CAGCTGTGAGGCAGAC-CTGTCTCTTTG-CAGTACTA-TGTGTTTGAT-G  1034

seq1  TAGCCTGCAGAACTTCCAGCCAGGGATCAACTAATAGGTGGTCTTACCAC  1099
      ||| ||||   |||| |||| |  |||| ||||||| |||| ||||||||
seq2  TAG-CTGC--GACTT-CAGCAA--GATC-ACTAATA-GTGG-CTTACCAC  1075

seq1  CACTGTCCTTAG  1111
      | |||| |||||
seq2  C-CTGT-CTTAG  1085

seq1: chr7_106963552_106964579
seq2: B6Ng01-045L20.g_68_1071 (reverse)

seq1  GAAGCTCAGGACGGAAGGGTTTTTCTCTTCCTGCACTATGGTGGGAAAGC  50
      |||||||| ||||  ||||||| |||    ||||||||||   |||||||
seq2  GAAGCTCA-GACG--AGGGTTTCTCT----CTGCACTATG--TGGAAAGC  41

seq1  AAGGCATAAAGACTCAAGCAGAGTCTGACAGCCCTGCCCCAAGCCTGCCC  100
      |  |||||||||||| |||||||||||||||  ||| |||||| ||| ||
seq2  A--GCATAAAGACTC-AGCAGAGTCTGACAG--CTG-CCCAAG-CTG-CC  83

seq1  TTATCACAATCGTGAGACACTGGGCAAACGTGATTGGCATTCCTCATTGG  150
      ||||||| ||||||||||||| ||||||||||| ||||| |||||||| |
seq2  TTATCAC-ATCGTGAGACACT-GGCAAACGTGA-TGGCA-TCCTCATT-G  128

seq1  CCAAATGGAGAGCATGAGAGGAGCTACGAAGGCAGTAAAGGAGACACTGC  200
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  CCAAAT-GAGAGCATGAGA-GAGCTACGAAGGCAGTAAAGGAGACACTGC  176

seq1  CTGGCCACACACCACAGGCGAGGCTCGAGCTTCTCACGCAGCATTTGGTA  250
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  CTGGCCACACACCACAGCGAAGGCTCGAGCTTCTCACGCAGCATTTGGTA  226

seq1  AATTTCTAGAATGCCAATAGAAAAGGGCAAAGAGCAAAATCAGACATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAGAATGCCAATAGAAAAGGGCAAAGAGCAAAATCAGACATGTC  276

seq1  ACAGAAGGAGGGGGAAAAAGGTGTTCAACCTTACACATAAAATATTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGAGGGGGAAAAAGGTGTTCAACCTTACACATAAAATATTAATA  326

seq1  GGAATTAAACTAATAGAATTTTCAATTAACATTTTTTTTACATTATACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAAACTAATAGAATTTTCAATTAACATTTTTTTTACATTATACAG  376

seq1  TTTGGTAATTGTTGGTAAAAAAAAATGTGGATAAATATGCCCCTTTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAATTGTTGGTAAAAAAAAATGTGGATAAATATGCCCCTTTATGT  426

seq1  ATGGGTTGGAGTATAAGAGTTGAGCTCTTCTGTGCAGATACATTTATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGGAGTATAAGAGTTGAGCTCTTCTGTGCAGATACATTTATCCT  476

seq1  TTCACAGGATGCTCAATTCTGGAAAATTATCCCAAGATCTATGTGTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGATGCTCAATTCTGGAAAATTATCCCAAGATCTATGTGTTCAT  526

seq1  TAAATAAAAGTCTGGAGATGTAGAATGGGGTAGAGCACACGCCTAGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAGTCTGGAGATGTAGAATGGGGTAGAGCACACGCCTAGCCAT  576

seq1  GTAGATCCCAGGGGTGGATCCTAGCACCACACACTGAGAGAAAAAGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCCCAGGGGTGGATCCTAGCACCACACACTGAGAGAAAAAGCACA  626

seq1  AGGCGATTCACTAGCAAGATAAATAAACCTCTTTTCTTCATAAACATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGATTCACTAGCAAGATAAATAAACCTCTTTTCTTCATAAACATTTT  676

seq1  AAAAGTGGTATTTCATGATCGCTTCGCTTGTAATTGTAAGTATCCCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGTATTTCATGATCGCTTCGCTTGTAATTGTAAGTATCCCAACA  726

seq1  CATGAGGTTGTGTTTAATGGGGGAAAATGACCCTTTGTTCATATATAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTTGTGTTTAATGGGGGAAAATGACCCTTTGTTCATATATAGTT  776

seq1  ATTGCGTCCCGCTCGACCGGCAAGAAAGACGCAACAAACCAGAATCTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCGTCCCGCTCGACCGGCAAGAAAGACGCAACAAACCAGAATCTTCC  826

seq1  GCGACAAGAGCTTTATTGCTTGCTTCTCAGGAAGATTCCGAACCGGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACAAGAGCTTTATTGCTTGCTTCTCAGGAAGATTCCGAACCGGGAAA  876

seq1  ATGGCGCTGCTTTTATAACCCGCAGGGTGACGTTTCAGCACCTGATATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGCTGCTTTTATAACCCGCAGGGTGACGTTTCAGCACCTGATATGG  926

seq1  CGTGACAGCTCCCGATTCGTTGCTTGCCCATCACCCCACTATTACACCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACAGCTCCCGATTCGTTGCTTGCCCATCACCCCACTATTACACCCC  976

seq1  GAGAATGGGAGTGACTAGGAGTGAATTC  1028
      ||||||||||||||||||||||||||||
seq2  GAGAATGGGAGTGACTAGGAGTGAATTC  1004