BAC Information

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BAC

Clone NameB6Ng01-046N11
Chromosome7 (Build37)
Map Location 64,408,703 - 64,544,133
singlet/doubletdoublet
Overlap geneGabrg3
Upstream geneHerc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046N11.bB6Ng01-046N11.g
ACCDH871883DH871884
length1,0881,118
definitionDH871883|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N11, 5' end.DH871884|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,408,703 - 64,409,813)(64,543,011 - 64,544,133)
sequence
gaattctaccaaacatcttgtggatggaaattcctggggtcaaaaaaaaa
aaaaacaaaaaaaaaaaaactgcatctggcattgggcctgctacaaggct
gattaactgatataactgatgattatagattaaccatgagtagccacaga
gagtacagctccaagaggccatttcagggtaattctcacgtgcaaacaca
cagagtttggatatattaagctcatattaaactcaactgattgcaacatc
aaattcttagcttgcagaggatgggacaggataatgtggagtggtggaaa
gtgtcctctcgtttgcttaatatatttccacattgtgcatacttattttt
ccaccgggagtatgtaatcacatggttctttggaagctcaaacatttgtc
ttttaaataagccaacaaagaaaataatacatgcttcagtaatcaaatga
aacacacttcaacagttttttgtgggccacagccattttgaattaccccc
tttcccccttcaaaacaatactttagttaattaaatttgcagtgcagcag
aagaaaccccagtgcttatatccgtgttgcctggcttccagtgagcttcc
cttgctccctgcacaaggcaccatctctcagtccctcctccaccaccctg
ctgtcatctcagggccaggggctaaaggagaactgcagtgcaaaccgaat
gttttgttttgtttcctatttttctccagagtctgtcgatggccccagga
gaacaagacaacgtttttttcctagcactcggaaataacaccagaactac
atatgtattaaaaagagaatgaaacaggtttggcatctgctgaaaactct
ggctgatcatttttgtgattggcagtaggaaacagttaaattgcacctgt
catccgagatattgcagaaagtggagagagtaagttaaaggagccactac
cagagcccttctctgaacatgactgacattcttcacacaactgagtctca
tagaatgcagttgtactctttgcagtgttatggcgtgcatgtgctaccct
gcttaagaaacagctttgcctccagatgtctcactgtt
gaattctttactaactacctctgaggtcctaaaactgtgtgggggcattc
actgaagaacactgccaatttcttccccctttccagcctcaatcatcttc
cccgctgatttcattggtttgagattcagaggtagggtcttgagtggaag
taaagttgtactcctctggtgcattgtctaagtgggaaagtccacctcca
gccaaggcaaggcatctatagccttagcatccatctgaagcatgcagtac
ttaattgcattgctgatgagtcggtagtggaacccaaggcagcacacatg
ctagtcaagtgttttacgactgagttcaggagtctgaggaaagatggtaa
caattccaagatcagcctgggttacggaggaagttaaatgtcagcttaga
agacttagtgatatcctatttcaaaggggaaaaaaaagagaggccttaga
ctctagctcaatggcagagcagtagattcacatgcatgagaccctctgtt
caaataccctcaggatagtttccacatttttagctgtgcatcaatcaatt
attgaagttttctgttccggtggtcaagaacttcaacaaagatgtttgct
aactaggctttggcttcggtcccaagtgtcaaccaatacataattcatgt
gaaaataaacactcctgtttttgcagttccagtagaagttgttagatttt
tttaatttgtttgttttcccagttaactcaaagtctcatcagctatgttt
tattttttatgctttatatctttagccaaaacctcaaatgaaagattggg
agaatgtctgaagtttattaaaagagcataagagaatacacgattagagg
cttgctcagttcacgtatattacatctacagggctgcagaccctaaggga
tgagtgcccacggaccagagactgttagggatgggaatatgtcttcattc
tgaataacctctgctcttccttggtgcacatactttgtgtagtccgtctg
cgaggtatgagcgagcttcatcttttacattatagaagctcaaggagttt
gaaggaaaaattaacagttcaagccaacctgggcttggtatctaagtgag
accctattttaaaataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_64408703_64409813
seq2: B6Ng01-046N11.b_47_1134

seq1  GAATTCTACCAAACATCTTGTGGATGGAAATTCCTGGGGTCAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCAAACATCTTGTGGATGGAAATTCCTGGGGTCAAAAAAAAA  50

seq1  AAAAACAAAAAAAAAAAAACTGCATCTGGCATTGGGCCTGCTACAAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAAAAAAAAACTGCATCTGGCATTGGGCCTGCTACAAGGCT  100

seq1  GATTAACTGATATAACTGATGATTATAGATTAACCATGAGTAGCCACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACTGATATAACTGATGATTATAGATTAACCATGAGTAGCCACAGA  150

seq1  GAGTACAGCTCCAAGAGGCCATTTCAGGGTAATTCTCACGTGCAAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGCTCCAAGAGGCCATTTCAGGGTAATTCTCACGTGCAAACACA  200

seq1  CAGAGTTTGGATATATTAAGCTCATATTAAACTCAACTGATTGCAACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTGGATATATTAAGCTCATATTAAACTCAACTGATTGCAACATC  250

seq1  AAATTCTTAGCTTGCAGAGGATGGGACAGGATAATGTGGAGTGGTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTAGCTTGCAGAGGATGGGACAGGATAATGTGGAGTGGTGGAAA  300

seq1  GTGTCCTCTCGTTTGCTTAATATATTTCCACATTGTGCATACTTATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCTCGTTTGCTTAATATATTTCCACATTGTGCATACTTATTTTT  350

seq1  CCACCGGGAGTATGTAATCACATGGTTCTTTGGAAGCTCAAACATTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGGGAGTATGTAATCACATGGTTCTTTGGAAGCTCAAACATTTGTC  400

seq1  TTTTAAATAAGCCAACAAAGAAAATAATACATGCTTCAGTAATCAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAAGCCAACAAAGAAAATAATACATGCTTCAGTAATCAAATGA  450

seq1  AACACACTTCAACAGTTTTTTGTGGGCCACAGCCATTTTGAATTACCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTTCAACAGTTTTTTGTGGGCCACAGCCATTTTGAATTACCCCC  500

seq1  TTTCCCCCTTCAAAACAATACTTTAGTTAATTAAATTTGCAGTGCAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCTTCAAAACAATACTTTAGTTAATTAAATTTGCAGTGCAGCAG  550

seq1  AAGAAACCCCAGTGCTTATATCCGTGTTGCCTGGCTTCCAGTGAGCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCCCAGTGCTTATATCCGTGTTGCCTGGCTTCCAGTGAGCTTCC  600

seq1  CTTGCTCCCTGCACAAGGCACCATCTCTCAGTCCCTCCTCCACCACCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCCCTGCACAAGGCACCATCTCTCAGTCCCTCCTCCACCACCCTG  650

seq1  CTGTCATCTCAGGGCCAGGGGCTAAAGGAGAACTGCAGTGCAAACCGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATCTCAGGGCCAGGGGCTAAAGGAGAACTGCAGTGCAAACCGAAT  700

seq1  GTTTTGTTTTGTTTCCTATTTTTCTCCAGAGTCTGTCGATGGCCCCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTCCTATTTTTCTCCAGAGTCTGTCGATGGCCCCAGGA  750

seq1  GAACAAGACAACGTTTTTTTCCTAGCACTCGGAAATAACACCAGAACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGACAACGTTTTTTTCCTAGCACTCGGAAATAACACCAGAACTAC  800

seq1  ATATGTATTAAAAAGAGAATGAAACAGGTTTGGCATCTGCTGAAAACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATTAAAAAGAGAATGAAACAGGTTTGGCATCTGCTGAAAACTCT  850

seq1  GGCTGATCATTTTTGTGATTGGCAGTAGGAAACAGTTAAATTGCACCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATCATTTTTGTGATTGGCAGTAGGAAACAGTTAAATTGCACCTGT  900

seq1  CATCCGAGAATATTGCAGAAAGTGGAGAGAGTAAGTTAAAGGAAGCCACT  950
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  CATCCGAG-ATATTGCAGAAAGTGGAGAGAGTAAGTTAAAGG-AGCCACT  948

seq1  ACCAGAGGCCCTTCTCTGAAACATGAACTGACCATTCTTCACACAAACTG  1000
      |||||| ||||||||||| |||||| ||||| |||||||||||| |||||
seq2  ACCAGA-GCCCTTCTCTG-AACATG-ACTGA-CATTCTTCACAC-AACTG  993

seq1  AAGTCTCATAGAAATGGCAGTTGTACTCTTTGGCAGTTGTTATGGCCGTG  1050
       ||||||||||||   ||||||||||||||| |||| |||||||| ||||
seq2  -AGTCTCATAGAA--TGCAGTTGTACTCTTT-GCAG-TGTTATGG-CGTG  1037

seq1  CATGTGCCTTAACCCTGCTTTAAGAAAACAGCCTTTGCCTTCAGAGGATG  1100
      |||||||    ||||||| ||||| |||||| |||||||| |||| |   
seq2  CATGTGC---TACCCTGC-TTAAG-AAACAG-CTTTGCCTCCAGATG---  1078

seq1  TTCTCACTGTT  1111
       ||||||||||
seq2  -TCTCACTGTT  1088

seq1: chr7_64543011_64544133
seq2: B6Ng01-046N11.g_68_1185 (reverse)

seq1  GTTATTTTGAAATAGTATCTCACTAAGATACCCAAGCCCAGGTTGGCCTT  50
      |||||||| ||||||  ||||||| ||||| ||||||||||||||| |||
seq2  GTTATTTTAAAATAGGGTCTCACTTAGATA-CCAAGCCCAGGTTGG-CTT  48

seq1  GAACTGGTTATATTTTTCCCTTCAACT-CTTGAGC-TCTAT-ATGTTAAA  97
      ||||| |||| |||||||| |  |||| ||||||| ||||| |||| |||
seq2  GAACT-GTTA-ATTTTTCCTTCAAACTCCTTGAGCTTCTATAATGTAAAA  96

seq1  GATGAAGCTCGCCTCATACCTCGCAGACCGGACTACACAAAGTATGTGCA  147
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  GATGAAGCTCG-CTCATACCTCGCAGA-CGGACTACACAAAGTATGTGCA  144

seq1  CCAAGGGAGAGCAGAGGTTATTCAGAATGAAGACATATTCCCATCCCTAA  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAGAGCAGAGGTTATTCAGAATGAAGACATATTCCCATCCCTAA  194

seq1  CAGTCTCTGGTCCGTGGGCACTCATCCCTTAGGGGTCTGCAGCCCTGTAG  247
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGTCTCTGGTCCGTGGGCACTCATCCCTTA-GGGTCTGCAGCCCTGTAG  243

seq1  ATGTAATATACGTGAACTGAGCAAGCCTCTAATCGTGTATTCTCTTATGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATATACGTGAACTGAGCAAGCCTCTAATCGTGTATTCTCTTATGC  293

seq1  TCTTTTAATAAACTTCAGACATTCTCCCAATCTTTCATTTGAGGTTTTTG  347
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTTTTAATAAACTTCAGACATTCTCCCAATCTTTCATTTGAGG-TTTTG  342

seq1  GCTAAAGATATAAAGCATAAAAAATAAAACATAGCTGATGAGACTTTGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGATATAAAGCATAAAAAATAAAACATAGCTGATGAGACTTTGAG  392

seq1  TTAACTGGGAAAACAAACAAATTAAAAAAATCTAACAACTTCTACTGGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGGAAAACAAACAAATTAAAAAAATCTAACAACTTCTACTGGAA  442

seq1  CTGCAAAAACAGGAGTGTTTATTTTCACATGAATTATGTATTGGTTGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAACAGGAGTGTTTATTTTCACATGAATTATGTATTGGTTGACA  492

seq1  CTTGGGACCGAAGCCAAAGCCTAGTTAGCAAACATCTTTGTTGAAGTTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACCGAAGCCAAAGCCTAGTTAGCAAACATCTTTGTTGAAGTTCT  542

seq1  TGACCACCGGAACAGAAAACTTCAATAATTGATTGATGCACAGCTAAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACCGGAACAGAAAACTTCAATAATTGATTGATGCACAGCTAAAAA  592

seq1  TGTGGAAACTATCCTGAGGGTATTTGAACAGAGGGTCTCATGCATGTGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAACTATCCTGAGGGTATTTGAACAGAGGGTCTCATGCATGTGAA  642

seq1  TCTACTGCTCTGCCATTGAGCTAGAGTCTAAGGCCTCTCTTTTTTTTCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCTCTGCCATTGAGCTAGAGTCTAAGGCCTCTCTTTTTTTTCCC  692

seq1  CTTTGAAATAGGATATCACTAAGTCTTCTAAGCTGACATTTAACTTCCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATAGGATATCACTAAGTCTTCTAAGCTGACATTTAACTTCCTC  742

seq1  CGTAACCCAGGCTGATCTTGGAATTGTTACCATCTTTCCTCAGACTCCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACCCAGGCTGATCTTGGAATTGTTACCATCTTTCCTCAGACTCCTG  792

seq1  AACTCAGTCGTAAAACACTTGACTAGCATGTGTGCTGCCTTGGGTTCCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTCGTAAAACACTTGACTAGCATGTGTGCTGCCTTGGGTTCCAC  842

seq1  TACCGACTCATCAGCAATGCAATTAAGTACTGCATGCTTCAGATGGATGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGACTCATCAGCAATGCAATTAAGTACTGCATGCTTCAGATGGATGC  892

seq1  TAAGGCTATAGATGCCTTGCCTTGGCTGGAGGTGGACTTTCCCACTTAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTATAGATGCCTTGCCTTGGCTGGAGGTGGACTTTCCCACTTAGA  942

seq1  CAATGCACCAGAGGAGTACAACTTTACTTCCACTCAAGACCCTACCTCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCACCAGAGGAGTACAACTTTACTTCCACTCAAGACCCTACCTCTG  992

seq1  AATCTCAAACCAATGAAATCAGCGGGGAAGATGATTGAGGCTGGAAAGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAACCAATGAAATCAGCGGGGAAGATGATTGAGGCTGGAAAGGG  1042

seq1  GGAAGAAATTGGCAGTGTTCTTCAGTGAATGCCCCCACACAGTTTTAGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAATTGGCAGTGTTCTTCAGTGAATGCCCCCACACAGTTTTAGGA  1092

seq1  CCTCAGAGGTAGTTAGTAAAGAATTC  1123
      ||||||||||||||||||||||||||
seq2  CCTCAGAGGTAGTTAGTAAAGAATTC  1118