BAC Information

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BAC

Clone NameB6Ng01-047C19
Chromosome7 (Build37)
Map Location 149,012,735 - 149,148,558
singlet/doubletdoublet
Overlap geneMuc5b, Tollip, EG623757, Brsk2
Upstream gene1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac
Downstream gene2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047C19.bB6Ng01-047C19.g
ACCDH872108DH872109
length1,157291
definitionDH872108|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C19, 5' end.DH872109|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,147,382 - 149,148,558)(149,012,735 - 149,013,011)
sequence
gaattcagaccttcacagacacaccagtcctatacatatgtgggtgtgca
tgcacatgcgtgcgtgtgcacgtgcacacacacacatgcatacacctgca
cactgtgacacaggcctgtagatctgcatgcaccctcaaatcccatccca
aagcagaagactccaggcctcctcgtctgagcatcctggagtcttcacac
tcgggtcctctgacagcccagcaatggaccactccaatgtcttccgagaa
acacggccagtactagagacaacttgcaagacccagtgatgtcccaattt
cactttcacaaccaccatcagtgccccttagcaacatcctctatgggcat
gtggtgctctggtaggtcatcctggatctttcaccagcagagccccagta
tcaccttgaggaattcaagggtataaaaggcctccatccttagtctttca
gggacacttctgccctgttacagttggcagctacgagcaccaataggcca
gcataggcaaatccactctccccatgcaggtgggaccccacgcccgcctt
gtaccaactctgttgtaggaatccactgcagtgagcagctaagacagaag
ctttaactaagagaaagctgaggagtccagctgttgcctatgtgttctta
tagccaaggagaagaaagcagcccggccagcactattctcatgcccaggg
aggcaacctttctggaggaaccatacacagttcagggaccccgccgcccc
accccaaggggaaatgctgctcagataatcagatagacagacagatgggc
tcatgcctggcctataatgccaacgggaggcccagtcaaagaaggaatca
cactgaaccctgcagtcacctgctgtcagggacagaaaccctggctccac
tcctgtgccagtgcctgcctgcacactctcaagcagaggccagtaatctg
cagtacgtataatagaatctgctagtgggcagcagcagaaggacagggag
aggagagaagcagagcttgccgccacactctggtacttccaaacagcagc
atctgttcccagtacactggcctactgtccactggaaaacctggcataac
tgccagcacctcttcccttcaggctgcacttaggctgggggttgccttgt
cccaaga
aaagaagtatttgttaaaaccctagcgtaaacatgagttaaggaaacccg
agtttaataaagatggatttcaggatgtggttcttggtaggtcaaacatg
ttccagtgggtgatcccatagccaagagtctaaggaaagtacaaattaga
tcccataggttaaaaggaaagagaaaaataatacaaaaaatgaggacatg
aagtggggcaaaggggcatgggccagggaggagttaggtggaggggtggg
ggtgaatatcctcggactaaaaaataaacacaaggtttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_149147382_149148558
seq2: B6Ng01-047C19.b_48_1204 (reverse)

seq1  TCTTGGGACAAGGCAACCCCCAGCCTAAGTGCCAGCCTGGAGAGGAAGAG  50
      ||||||||||||||||||||||||||||||| ||||||| || |||||||
seq2  TCTTGGGACAAGGCAACCCCCAGCCTAAGTG-CAGCCTGAAG-GGAAGAG  48

seq1  GTGGCTGAGGCAGACTAATGCCAGGTTTCTCAGTTGGACAGTAGCGCAGT  100
      || |||  |||||  | |||||||||||  ||| ||||||||||  ||||
seq2  GT-GCT--GGCAG--TTATGCCAGGTTTTCCAG-TGGACAGTAGGCCAGT  92

seq1  GGTACTTGGGGACAGATGCTGCTGTTTGGAAGTACCAGAGTGTGGGCCGG  150
       |||| |||| ||||||||||||||||||||||||||||||||||  |||
seq2  -GTAC-TGGGAACAGATGCTGCTGTTTGGAAGTACCAGAGTGTGG--CGG  138

seq1  CAAGCTCTGCTTCTCTCCTCTCCCTGTCCTTCCTGCCTGCTGCCCACTAA  200
      ||||||||||||||||||||||||||||||| ||| |||||||||||| |
seq2  CAAGCTCTGCTTCTCTCCTCTCCCTGTCCTT-CTG-CTGCTGCCCACT-A  185

seq1  GCAGATTCTATTATTACCTTACTGCAGATTACTGGCCTCCTGCTTGAGAG  250
      ||||||||||||||   | ||||||||||||||||||| |||||||||||
seq2  GCAGATTCTATTAT--ACGTACTGCAGATTACTGGCCT-CTGCTTGAGAG  232

seq1  TGTGCAGGCAGGCACTGGCACAGGGGTGGAGCCAGGGTTTCTGTCCCTGA  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTGCAGGCAGGCACTGGCACAGGAGTGGAGCCAGGGTTTCTGTCCCTGA  282

seq1  CAGCAGGTGACTGCAGGGTTCAGTGTGATTCCCTTCTTTGACTGGGGCCT  350
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  CAGCAGGTGACTGCAGGGTTCAGTGTGATT-CCTTCTTTGACT-GGGCCT  330

seq1  CCCGTTGGCATTATAGGCCAGGCATGGGCCCATCTGTCTGTCTATCTGAT  400
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCGTTGGCATTATAGGCCAGGCATGAGCCCATCTGTCTGTCTATCTGAT  380

seq1  TATCTGAGCAGCATTTCCCCTTGGGGTGGGGCGGCGGGGTCCCTGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGCAGCATTTCCCCTTGGGGTGGGGCGGCGGGGTCCCTGAACTG  430

seq1  TGTATGGTTCCTCCAGAAAGGTTGCCTCCCTGGGCATGAGAATAGTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTTCCTCCAGAAAGGTTGCCTCCCTGGGCATGAGAATAGTGCTG  480

seq1  GCCGGGCTGCTTTCTTCTCCTTGGCTATAAGAACACATAGGCAACAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCTGCTTTCTTCTCCTTGGCTATAAGAACACATAGGCAACAGCTG  530

seq1  GACTCCTCAGCTTTCTCTTAGTTAAAGCTTCTGTCTTAGCTGCTCACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCAGCTTTCTCTTAGTTAAAGCTTCTGTCTTAGCTGCTCACTGC  580

seq1  AGTGGATTCCTACAACAGAGTTGGTACAAGGCGGGCGTGGGGTCCCACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATTCCTACAACAGAGTTGGTACAAGGCGGGCGTGGGGTCCCACCT  630

seq1  GCATGGGGAGAGTGGATTTGCCTATGCTGGCCTATTGGTGCTCGTAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGAGAGTGGATTTGCCTATGCTGGCCTATTGGTGCTCGTAGCTG  680

seq1  CCAACTGTAACAGGGCAGAAGTGTCCCTGAAAGACTAAGGATGGAGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGTAACAGGGCAGAAGTGTCCCTGAAAGACTAAGGATGGAGGCCT  730

seq1  TTTATACCCTTGAATTCCTCAAGGTGATACTGGGGCTCTGCTGGTGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCCTTGAATTCCTCAAGGTGATACTGGGGCTCTGCTGGTGAAAG  780

seq1  ATCCAGGATGACCTACCAGAGCACCACATGCCCATAGAGGATGTTGCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGATGACCTACCAGAGCACCACATGCCCATAGAGGATGTTGCTAA  830

seq1  GGGGCACTGATGGTGGTTGTGAAAGTGAAATTGGGACATCACTGGGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACTGATGGTGGTTGTGAAAGTGAAATTGGGACATCACTGGGTCTT  880

seq1  GCAAGTTGTCTCTAGTACTGGCCGTGTTTCTCGGAAGACATTGGAGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGTCTCTAGTACTGGCCGTGTTTCTCGGAAGACATTGGAGTGGT  930

seq1  CCATTGCTGGGCTGTCAGAGGACCCGAGTGTGAAGACTCCAGGATGCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCTGGGCTGTCAGAGGACCCGAGTGTGAAGACTCCAGGATGCTCA  980

seq1  GACGAGGAGGCCTGGAGTCTTCTGCTTTGGGATGGGATTTGAGGGTGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGGAGGCCTGGAGTCTTCTGCTTTGGGATGGGATTTGAGGGTGCAT  1030

seq1  GCAGATCTACAGGCCTGTGTCACAGTGTGCAGGTGTATGCATGTGTGTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTACAGGCCTGTGTCACAGTGTGCAGGTGTATGCATGTGTGTGT  1080

seq1  GTGCACGTGCACACGCACGCATGTGCATGCACACCCACATATGTATAGGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGTGCACACGCACGCATGTGCATGCACACCCACATATGTATAGGA  1130

seq1  CTGGTGTGTCTGTGAAGGTCTGAATTC  1177
      |||||||||||||||||||||||||||
seq2  CTGGTGTGTCTGTGAAGGTCTGAATTC  1157

seq1: chr7_149012735_149013011
seq2: B6Ng01-047C19.g_66_349

seq1  GAATTCAAAGAAGTATTTGTTAAAACCCTAGCGTAAACATGAGTTAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAGTATTTGTTAAAACCCTAGCGTAAACATGAGTTAAGGA  50

seq1  AACCCGAGTTTAATAAAGATGGATTTCAGGATGTGGTTCTTGGTAGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGAGTTTAATAAAGATGGATTTCAGGATGTGGTTCTTGGTAGGTCA  100

seq1  AACATGTTCCAGTGGGTGATCCCATAGCCAAGAGTCTAAGGAAAGTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTCCAGTGGGTGATCCCATAGCCAAGAGTCTAAGGAAAGTACAA  150

seq1  ATTAGATCCCATAGGTTAAAAGGAAAGAGAAAAATAATACAAAAAATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATCCCATAGGTTAAAAGGAAAGAGAAAAATAATACAAAAAATGAG  200

seq1  GACATGAAGTGGGGCAAAGGGGCATGGGCCAGGGAGGAGTTAGGTGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAAGTGGGGCAAAGGGGCATGGGCCAGGGAGGAGTTAGGTGGAGG  250

seq1  GGTGGGGGTGAATATTATC-------AAAATAAA  277
      |||||||||||||||  ||       ||||||||
seq2  GGTGGGGGTGAATATCCTCGGACTAAAAAATAAA  284